Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011212.1 Kokia drynarioides strain JFW-HI SEQ_126190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13496
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:8147 original size:48 final size:48

Alignment explanation


    Indices: 8076--8172  Score: 194
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       8066 TTTAAGAAAG

                                                            
       8076 TCTGTGCCAAATCTTTCCACGAATAGATTTTTGATCAGCTTAACTGAT
          1 TCTGTGCCAAATCTTTCCACGAATAGATTTTTGATCAGCTTAACTGAT

                                                            
       8124 TCTGTGCCAAATCTTTCCACGAATAGATTTTTGATCAGCTTAACTGAT
          1 TCTGTGCCAAATCTTTCCACGAATAGATTTTTGATCAGCTTAACTGAT

             
       8172 T
          1 T

       8173 GTACCATCTA


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   49  1.00

ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38


Consensus pattern (48 bp):   
TCTGTGCCAAATCTTTCCACGAATAGATTTTTGATCAGCTTAACTGAT
Done.