Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011216.1 Kokia drynarioides strain JFW-HI SEQ_126194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2619
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:786 original size:8 final size:7

Alignment explanation


    Indices: 754--785  Score: 50
    Period size: 6  Copynumber: 4.9  Consensus size: 7

        744 TATGCTCTAT

                   
        754 ATTTTTC
          1 ATTTTTC

                   
        761 -TTTTTC
          1 ATTTTTC

                   
        767 -TTTTTC
          1 ATTTTTC

                   
        773 ATTTTTC
          1 ATTTTTC

                  
        780 ATTTTT
          1 ATTTTT

        786 TTCTTGAGCG


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   6   12  0.50
   7   12  0.50

ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78


Consensus pattern (7 bp):   
ATTTTTC
Done.