Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011221.1 Kokia drynarioides strain JFW-HI SEQ_126199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2425
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33


Found at i:75 original size:17 final size:17

Alignment explanation


    Indices: 3--81  Score: 56
    Period size: 17  Copynumber: 4.6  Consensus size: 17

          1 TT

                      *   *  
          3 AATTTAAA-TAAATTTA
          1 AATTTAAATTTAATATA

              *                
         19 AACTTAATATTT-ATAATA
          1 AATTTAA-ATTTAAT-ATA

                       *     *
         37 AATTTAAATTCCAA-ATG
          1 AATTTAAATT-TAATATA

            *                
         54 GATTTAAATTTAATATA
          1 AATTTAAATTTAATATA

                       
         71 AATTTAAATTT
          1 AATTTAAATTT

         82 GTTGGGCTCG


Statistics
Matches: 47,  Mismatches: 10, Indels: 11
        0.69            0.15        0.16

Matches are distributed among these distances:
  16    8  0.17
  17   29  0.62
  18    9  0.19
  19    1  0.02

ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44


Consensus pattern (17 bp):   
AATTTAAATTTAATATA
Done.