genome.fa.s11224.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011224.1 Kokia drynarioides strain JFW-HI SEQ_126202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83373

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4037--4110	20	3.6	20	71	7	58	52	9	8	29	1.62
5316--5390	27	2.8	27	81	4	71	54	4	17	24	1.59
5879--5926	23	2.1	23	92	0	78	50	4	0	45	1.21
7313--9242	663	2.9	661	94	2	3324	25	16	16	41	1.89
10546--10638	43	2.2	40	81	9	107	38	4	1	55	1.26
10606--10642	18	2.1	18	89	0	56	43	0	2	54	1.14
15039--15071	17	1.9	17	88	11	50	33	0	0	66	0.92
15172--15357	97	1.9	97	88	0	282	34	13	17	34	1.89
21259--21312	21	2.6	21	82	5	65	31	14	24	29	1.95
24058--24109	11	4.7	11	77	13	54	65	9	13	11	1.47
24057--24109	22	2.4	22	84	6	72	66	9	13	11	1.46
26775--26810	19	1.9	19	88	5	56	55	2	0	41	1.14
29013--29059	2	23.5	2	86	0	58	48	4	0	46	1.21
31011--31056	6	8.3	6	79	18	55	17	2	17	63	1.42
31011--31055	16	2.8	16	82	0	63	17	2	15	64	1.39
31015--31045	10	3.1	10	95	0	53	19	0	16	64	1.29
33230--33290	16	3.5	16	74	20	59	36	32	18	13	1.89
33230--33405	37	4.7	37	86	1	217	35	31	17	14	1.91
33232--33405	75	2.3	75	83	4	226	35	31	17	14	1.91
35745--35845	24	4.2	24	82	2	121	24	23	18	32	1.97
39444--39857	43	9.7	43	80	4	446	29	27	18	24	1.98
39918--39950	15	2.2	15	94	0	57	45	30	0	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41060--41561	173	2.9	171	90	2	789	30	23	15	30	1.95
42085--42462	41	9.3	41	85	2	476	21	27	26	24	2.00
42390--42521	41	3.2	41	88	5	151	22	31	22	22	1.98
42511--42618	40	2.7	40	88	0	144	21	24	17	37	1.94
44907--44965	24	2.5	24	82	0	73	47	10	11	30	1.73
58446--58685	127	1.9	128	82	0	302	40	18	12	27	1.87
59599--59632	5	6.6	5	89	3	50	14	41	23	20	1.89
61078--61123	3	15.3	3	100	0	92	32	0	34	32	1.58
61130--61168	19	2.1	19	95	0	69	41	7	10	41	1.68
61983--62105	61	2.0	61	100	0	246	24	19	24	31	1.98
63449--63516	25	2.7	25	86	2	100	42	11	14	30	1.82
66547--66598	19	2.7	19	73	8	52	34	0	3	61	1.14
67066--67135	22	3.2	22	61	15	54	47	10	17	25	1.78
66863--67106	127	1.9	127	86	0	344	39	19	14	26	1.90
67072--67144	24	3.2	24	62	15	64	45	12	13	28	1.80
67067--67156	44	2.0	44	100	0	180	51	11	13	24	1.73
68353--68390	20	2.0	20	89	5	60	50	5	0	44	1.24
68374--68418	18	2.4	18	81	3	54	48	0	0	51	1.00
68373--68417	19	2.4	19	80	0	54	48	0	0	51	1.00
68373--68458	33	2.8	31	73	11	79	47	1	0	51	1.08
68680--68900	31	7.4	31	64	18	126	25	19	10	45	1.81
68680--68892	59	3.6	60	90	3	315	25	18	10	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69072--69194	59	2.1	59	80	1	140	52	12	14	21	1.74
69153--69233	38	2.2	37	82	4	92	55	7	14	22	1.64
77609--77768	81	2.0	81	98	0	311	11	18	23	46	1.81
79105--79135	14	2.1	15	94	5	55	35	6	22	35	1.80
79420--79452	6	5.5	6	96	0	57	15	3	45	36	1.61
82240--82515	29	9.4	29	72	16	210	33	30	4	30	1.78
82237--82558	59	5.5	58	87	4	416	32	31	4	30	1.79

Tables:   1

The End!