genome.fa.s11225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011225.1 Kokia drynarioides strain JFW-HI SEQ_126203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116623

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155--208	17	3.4	17	71	23	55	31	1	0	66	1.02
1800--1974	63	2.7	62	86	12	257	53	4	0	42	1.24
1803--1988	68	2.8	67	83	9	213	55	3	1	39	1.25
2545--2735	39	4.8	39	74	6	152	25	17	25	31	1.97
2506--2888	79	4.8	79	88	1	489	25	16	24	33	1.96
2506--2844	40	8.6	39	70	5	223	25	16	25	33	1.96
2506--2933	158	2.7	158	83	2	387	25	17	24	32	1.96
2953--3127	50	3.5	50	82	1	226	21	24	18	34	1.96
12228--12277	19	2.7	19	77	19	52	32	4	0	64	1.12
14622--14654	6	5.5	6	100	0	66	15	0	51	33	1.43
17082--17271	29	6.5	29	73	8	102	33	3	25	36	1.74
17120--17272	58	2.6	57	84	11	193	32	3	27	36	1.75
17116--17272	30	5.3	29	78	9	140	31	3	27	36	1.75
18371--18424	20	2.7	21	85	5	67	31	0	1	66	1.02
19211--19245	17	2.1	17	89	10	54	51	0	0	48	1.00
19392--19421	13	2.3	13	94	0	51	83	0	0	16	0.65
30114--30207	46	2.0	46	100	0	188	30	17	25	26	1.97
33122--33175	26	2.0	27	82	10	67	50	5	3	40	1.44
34700--34969	29	9.2	29	80	8	269	31	3	30	34	1.74
34625--34943	59	5.4	58	81	10	312	31	3	31	33	1.74
34712--34973	59	4.5	59	88	4	318	32	2	31	33	1.72
45892--45919	5	5.6	5	100	0	56	82	0	17	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50816--50857	18	2.5	18	81	11	54	33	0	4	61	1.17
53267--53318	21	2.5	20	73	17	52	36	7	0	55	1.29
55810--55881	34	2.1	34	92	0	117	51	1	18	29	1.54
61067--61091	6	4.2	6	100	0	50	32	68	0	0	0.90
65520--65548	2	14.5	2	100	0	58	48	0	0	51	1.00
65657--65703	19	2.5	19	77	16	62	38	0	0	61	0.96
65657--65726	10	7.2	9	73	13	59	37	1	1	60	1.15
65657--65726	29	2.4	29	81	9	79	37	1	1	60	1.15
70976--71056	26	3.1	26	87	0	108	35	19	7	37	1.80
73764--73800	18	2.1	18	94	0	65	24	18	32	24	1.97
73581--73955	201	1.9	201	86	0	543	27	16	29	26	1.97
74649--74686	20	1.9	20	89	10	60	39	7	21	31	1.82
79701--79730	15	2.0	15	93	0	51	50	13	30	6	1.67
81196--81242	18	2.6	18	80	10	51	51	2	2	44	1.25
83077--83129	26	2.1	25	82	10	63	37	0	1	60	1.08
85960--86014	28	2.0	28	88	0	83	56	0	3	40	1.17
97258--97308	25	2.0	25	96	0	93	45	1	0	52	1.12
104816--104892	29	2.7	29	100	0	154	27	11	12	48	1.76
107895--108086	96	2.0	96	82	6	237	38	13	18	29	1.89
108293--108364	29	2.5	30	86	8	96	27	8	29	34	1.86
108316--108425	29	3.8	29	76	7	105	28	5	32	33	1.80
108322--108456	59	2.3	58	85	2	180	33	4	28	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108351--108550	89	2.3	90	76	9	223	38	3	25	33	1.73
108410--108722	30	10.6	31	69	20	165	40	3	23	32	1.71
108345--108461	58	2.0	59	81	1	137	36	2	29	31	1.71
108410--108484	31	2.5	30	86	6	98	45	2	21	30	1.66
108440--108751	59	5.3	57	81	8	315	40	3	23	33	1.71
109885--109951	3	21.3	3	84	6	80	32	0	2	64	1.09
110361--110402	21	2.0	21	100	0	84	19	23	4	52	1.65
110471--110585	56	2.0	57	96	1	214	29	11	35	23	1.90
110723--110794	17	4.2	17	80	0	90	55	4	4	36	1.38
110734--110800	34	2.0	34	93	0	116	56	7	2	32	1.42
113477--113534	3	19.3	3	100	0	116	34	0	0	65	0.93
113849--113896	17	2.6	19	83	6	64	62	2	6	29	1.31

Tables:   1

The End!