genome.fa.s11231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011231.1 Kokia drynarioides strain JFW-HI SEQ_126209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114891

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3769--3813	16	2.7	17	79	6	65	46	4	4	44	1.43
6241--6330	29	3.0	30	77	8	94	43	15	14	26	1.85
8889--8936	22	2.2	22	85	3	62	45	2	2	50	1.25
9037--9691	140	4.8	139	84	5	811	27	19	21	30	1.98
8999--9817	280	3.0	271	83	9	916	27	19	21	30	1.98
9429--9872	126	3.5	126	88	1	656	26	20	22	29	1.98
11241--11274	17	2.1	16	88	5	50	41	0	2	55	1.15
11236--11304	30	2.4	28	85	4	84	42	1	1	55	1.18
12124--12162	10	4.0	10	96	3	71	58	0	0	41	0.98
13196--13655	29	15.5	29	75	8	327	35	29	3	32	1.73
13196--13625	59	7.3	59	79	6	358	35	29	3	32	1.73
24497--24535	10	4.0	10	96	3	71	58	0	0	41	0.98
25569--26028	29	15.5	29	75	8	327	35	29	3	32	1.73
25569--25998	59	7.3	59	79	6	358	35	29	3	32	1.73
43180--43410	50	4.6	50	70	9	146	33	14	34	17	1.90
43335--43438	53	2.0	53	90	0	163	33	14	32	19	1.92
43763--43882	41	2.9	41	87	2	170	33	15	18	33	1.92
43958--44875	208	4.4	209	86	1	1173	38	17	20	22	1.93
44818--44927	37	3.0	37	78	2	123	36	16	20	26	1.94
45922--45946	10	2.5	10	100	0	50	84	0	16	0	0.63
46724--46795	31	2.4	31	81	13	87	30	29	2	37	1.72
46874--47257	89	4.3	87	80	8	382	36	24	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46854--47257	177	2.3	178	79	10	450	36	24	4	35	1.76
46866--47256	29	13.3	29	65	16	126	35	24	4	35	1.76
51192--51222	14	2.1	15	94	5	55	61	3	12	22	1.46
51441--51929	29	16.7	29	88	4	612	31	2	33	33	1.70
51441--51929	59	8.4	58	86	6	571	31	2	33	33	1.70
51441--51935	88	5.6	88	90	3	739	31	2	33	32	1.70
52938--52973	14	2.6	14	100	0	72	38	5	0	55	1.23
53686--53768	17	4.9	17	76	5	87	46	3	3	45	1.37
53686--53768	34	2.4	34	87	0	112	46	3	3	45	1.37
55076--55124	19	2.6	19	78	12	55	32	0	6	61	1.21
62196--62256	10	6.4	10	75	22	60	80	1	1	16	0.88
62196--62251	6	9.7	6	77	14	64	82	1	0	16	0.76
62203--62251	13	3.5	13	76	15	53	83	2	0	14	0.73
62196--62256	23	2.6	23	84	7	70	80	1	1	16	0.88
64005--64352	94	3.6	93	77	10	315	25	19	18	36	1.94
64005--64370	194	1.9	194	83	0	480	25	19	18	36	1.95
69348--69379	12	2.7	12	90	0	55	59	9	15	15	1.60
70778--71390	306	2.0	306	98	0	1181	41	19	16	22	1.90
78302--78353	21	2.5	21	80	0	59	25	30	13	30	1.94
81047--81108	13	4.8	13	80	7	54	38	17	3	40	1.66
81047--81108	26	2.4	26	83	0	79	38	17	3	40	1.66
81806--82060	126	2.1	124	82	7	304	41	9	4	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88838--88915	36	2.2	36	78	0	84	37	11	32	19	1.87
91299--91332	15	2.3	15	95	5	61	41	26	5	26	1.78
99938--100139	79	2.6	79	90	1	307	31	25	17	25	1.97
101199--101225	13	2.1	13	100	0	54	55	14	0	29	1.40
107570--107672	41	2.4	41	85	4	134	33	37	11	16	1.85
109070--109247	42	4.2	42	89	1	257	37	23	16	22	1.94
109070--109247	85	2.1	84	88	1	257	37	23	16	22	1.94
110193--110228	18	1.9	19	88	5	56	22	8	8	61	1.51
111399--111447	22	2.2	22	88	0	71	44	14	12	28	1.81
112421--112578	80	2.0	80	91	2	255	34	14	23	27	1.94

Tables:   1

The End!