genome.fa.s11238.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011238.1 Kokia drynarioides strain JFW-HI SEQ_126216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114778

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142--263	50	2.4	52	81	16	141	34	5	0	59	1.21
158--263	49	2.1	50	83	11	130	38	4	0	56	1.20
860--931	11	6.4	11	75	12	56	30	13	0	55	1.39
819--931	6	19.8	6	72	17	71	31	14	0	53	1.47
820--931	56	2.0	56	83	1	143	31	14	0	53	1.47
1710--1787	36	2.2	36	90	4	122	47	8	10	33	1.69
11656--11695	19	2.1	19	86	9	55	60	5	0	35	1.19
11961--12180	110	2.0	110	98	0	422	35	10	12	41	1.77
13974--14026	20	2.4	23	84	9	76	16	3	16	62	1.47
14361--14390	14	2.1	15	93	6	53	16	0	6	76	0.99
18002--18084	42	2.0	42	97	0	157	34	27	14	22	1.93
18009--18196	102	1.8	102	89	2	297	35	22	15	26	1.94
18609--18654	23	2.0	22	91	4	74	17	2	19	60	1.46
18920--18968	25	1.9	26	84	12	66	22	2	10	65	1.34
19102--19152	9	5.2	10	79	9	52	17	3	1	76	1.03
21188--21258	31	2.2	32	85	2	90	43	12	4	39	1.62
28807--28831	13	1.9	13	100	0	50	24	0	0	76	0.80
31499--31552	22	2.3	23	81	15	67	42	33	0	24	1.55
31610--31647	20	1.9	20	88	0	58	26	44	18	10	1.82
34306--34368	26	2.4	26	100	0	126	41	17	11	30	1.84
34642--34668	13	2.1	13	100	0	54	14	14	14	55	1.70
38338--38701	192	1.9	192	86	2	527	28	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44596--44620	13	1.9	13	100	0	50	0	12	0	88	0.53
45177--45219	17	2.5	17	92	3	68	51	13	18	16	1.77
55953--56391	192	2.3	192	83	0	556	27	24	18	29	1.98
62766--62887	37	3.3	37	81	2	147	12	16	31	39	1.85
62749--62887	74	1.9	73	86	4	199	12	16	30	39	1.86
62856--62895	21	1.9	21	94	0	71	7	15	37	40	1.75
62855--62901	21	2.2	21	84	0	67	10	17	36	36	1.84
65796--65840	13	3.5	13	84	3	65	0	15	0	84	0.62
90736--90776	21	2.0	20	85	4	55	78	0	14	7	0.96
93196--93274	7	11.3	7	81	0	86	17	22	25	34	1.96
93197--93273	21	3.7	21	89	0	118	18	20	25	35	1.95
98919--98987	21	3.3	21	80	11	79	20	15	24	39	1.92
98926--98978	14	3.8	14	78	9	63	20	13	26	39	1.89
101331--101406	29	2.7	29	80	13	77	38	1	23	36	1.64
101396--101768	59	6.4	60	78	8	319	35	2	26	35	1.72
101372--101738	29	12.6	29	77	8	273	35	2	26	35	1.71
101454--101694	88	2.8	87	80	5	279	38	2	25	34	1.68
101454--101774	88	3.7	86	76	7	254	36	2	25	35	1.71
101474--101773	30	10.2	30	73	17	132	36	3	25	35	1.72
101353--101775	29	14.5	28	75	15	199	34	2	26	36	1.71
101717--101794	30	2.6	30	87	4	95	30	5	25	38	1.78
102822--102872	18	3.1	16	79	20	52	64	0	3	31	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102842--102875	14	2.5	14	90	4	52	61	0	0	38	0.96
104006--104427	39	10.8	39	70	6	255	25	19	30	25	1.98
103939--104413	78	6.1	79	82	5	516	25	19	30	24	1.98

Tables:   1

The End!