Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011239.1 Kokia drynarioides strain JFW-HI SEQ_126217, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4729
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31


Found at i:2093 original size:45 final size:45

Alignment explanation


    Indices: 1957--2080  Score: 176
    Period size: 45  Copynumber: 2.8  Consensus size: 45

       1947 GCATAGCTCA

                           *   *   *                     
       1957 TCAAGCCAAGGATATTAGCTTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC

                                       *                 
       2002 TCAAGCCAAGGATATCAGCCTCAATTTAACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC

                 **           *  *            
       2047 TCAAGGGAAGGATATCAGGCTGAATTTGACGAGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGC

       2081 TATCGCGATA


Statistics
Matches: 70,  Mismatches: 9, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  45   70  1.00

ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC

Found at i:2114 original size:21 final size:21

Alignment explanation


    Indices: 2088--2130  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2078 AGCTATCGCG

                    *            
       2088 ATACTCTATTCCTCCCGGGCA
          1 ATACTCTACTCCTCCCGGGCA

                           *     
       2109 ATACTCTACTCCTCCGGGGCA
          1 ATACTCTACTCCTCCCGGGCA

             
       2130 A
          1 A

       2131 ATAGACCCTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.21, C:0.37, G:0.16, T:0.26


Consensus pattern (21 bp):   
ATACTCTACTCCTCCCGGGCA
Done.