genome.fa.s11242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011242.1 Kokia drynarioides strain JFW-HI SEQ_126220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117065

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--56	3	18.7	3	92	0	94	66	1	0	32	1.03
299--455	78	2.0	77	91	1	251	19	24	43	12	1.85
1117--1563	30	15.1	29	76	11	313	34	27	4	32	1.78
1094--1555	59	7.8	59	81	5	470	34	27	4	32	1.78
10035--10089	26	2.2	25	90	3	83	45	23	10	20	1.82
10076--10151	25	3.0	25	100	0	152	44	27	11	15	1.82
17798--17876	14	5.9	12	74	11	50	2	15	3	78	1.00
17798--17841	17	2.6	17	74	0	52	0	15	2	81	0.78
17819--17858	18	2.2	18	86	0	53	0	10	5	85	0.75
17809--17871	29	2.2	29	78	10	69	3	14	4	77	1.05
18737--18806	20	3.3	19	76	20	59	72	1	5	20	1.12
29287--29373	17	5.0	17	79	9	86	37	2	8	51	1.44
29318--29375	11	5.2	11	78	15	57	41	0	6	51	1.28
30088--30214	3	42.0	3	84	4	166	61	1	1	35	1.15
30529--30559	3	10.3	3	100	0	62	67	0	0	32	0.91
31239--31353	29	3.9	30	76	14	123	35	26	0	38	1.57
31251--31493	58	4.3	58	72	17	176	34	26	1	38	1.64
31263--31464	106	1.9	106	86	8	286	33	26	0	39	1.63
31356--31556	59	3.4	56	79	8	174	31	26	3	37	1.75
31813--31995	97	1.9	97	84	4	244	31	15	14	39	1.87
38428--38471	18	2.4	18	80	3	52	54	0	38	6	1.27
42594--42654	28	2.2	28	93	0	104	37	18	14	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43139--43820	99	6.9	99	83	6	701	37	19	26	16	1.93
43127--43803	49	13.8	49	67	12	289	38	19	25	15	1.92
45239--45335	3	32.0	3	77	10	99	59	3	1	36	1.20
46421--46760	29	11.7	30	70	15	171	32	23	2	40	1.70
46407--46822	58	7.1	58	82	4	419	32	24	3	39	1.72
46805--46864	28	2.1	28	81	6	68	35	30	8	26	1.86
47957--48013	10	5.7	10	75	8	53	61	1	0	36	1.07
49765--49825	32	1.9	32	83	3	79	27	29	16	26	1.97
56435--56472	18	2.2	17	86	9	51	36	10	0	52	1.36
57411--57579	58	2.9	58	83	6	182	39	2	24	33	1.71
57474--57615	29	4.9	28	73	6	88	41	0	21	35	1.59
57410--57602	58	3.3	58	78	8	153	38	3	23	34	1.71
58775--58819	3	15.0	3	100	0	90	33	0	0	66	0.92
64551--64621	28	2.5	28	77	11	74	30	5	29	33	1.81
64781--64881	28	3.7	27	74	12	107	39	1	25	32	1.67
64767--64953	56	3.3	56	87	5	252	36	2	27	33	1.71
64767--64949	29	6.4	28	74	11	124	37	2	26	33	1.71
64807--64949	29	4.9	29	76	9	130	38	3	26	31	1.73
64863--64949	30	2.9	30	80	8	106	39	4	25	31	1.76
64861--64984	29	4.2	30	77	10	89	37	4	25	33	1.75
64792--64984	29	6.7	29	72	10	87	39	3	24	33	1.71
64807--64974	56	2.9	59	82	6	141	38	3	25	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66100--66144	3	15.0	3	100	0	90	33	0	0	66	0.92
66858--66923	17	3.9	17	79	0	78	56	4	4	34	1.40
66863--66929	34	2.0	34	93	0	116	56	7	2	32	1.42
76640--76675	18	2.0	18	89	10	56	38	0	11	50	1.38
89946--90008	3	21.3	3	86	3	83	63	1	3	31	1.19
90206--90239	16	2.1	17	89	10	54	85	0	14	0	0.60
90347--90375	15	1.9	15	100	0	58	27	13	17	41	1.87
97026--97061	2	18.0	2	100	0	72	50	0	0	50	1.00
97605--97730	34	3.7	34	75	10	96	34	5	3	56	1.41
97665--97709	23	2.0	23	87	8	67	31	2	4	62	1.27
106671--106711	9	4.3	9	82	11	55	63	4	2	29	1.28
106669--106711	20	2.2	19	87	4	59	62	4	2	30	1.28
106976--107027	19	2.7	19	77	11	52	28	1	5	63	1.28
106984--107062	29	2.7	29	82	5	79	36	1	3	58	1.24
106956--107176	9	23.6	9	65	18	62	31	3	5	59	1.37
109622--109679	22	2.8	20	73	14	55	29	3	1	65	1.19
113125--113321	75	2.6	75	97	0	376	40	16	9	33	1.81
114531--114566	16	2.2	17	90	5	56	63	5	8	22	1.43
116086--116545	59	7.8	59	86	1	557	31	4	31	32	1.77
116099--116549	30	15.3	30	69	14	219	31	4	31	32	1.77

Tables:   1

The End!