genome.fa.s11243.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011243.1 Kokia drynarioides strain JFW-HI SEQ_126221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217176

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2489--2679	93	2.0	94	87	2	276	29	28	13	28	1.94
13650--13689	20	2.0	20	90	0	62	27	5	35	32	1.79
14189--14276	29	3.1	27	79	12	88	40	22	4	31	1.74
14182--14301	29	4.2	29	72	7	84	40	21	3	34	1.70
14281--14484	30	6.8	29	80	7	203	39	25	3	32	1.72
14282--14492	60	3.5	58	81	7	233	38	24	3	32	1.73
14281--14484	90	2.2	90	81	4	239	39	25	3	32	1.72
17965--18287	59	5.4	58	75	10	230	39	2	23	34	1.67
17953--18290	30	11.3	29	81	7	281	38	2	23	35	1.67
17944--18302	149	2.4	147	80	7	413	38	2	24	34	1.70
20334--20501	85	2.0	85	84	0	219	25	25	13	36	1.92
20212--20665	209	2.2	210	88	1	669	23	23	16	37	1.93
20598--20702	37	2.8	37	86	0	156	22	19	19	39	1.93
20388--20908	247	2.1	246	87	2	733	23	22	16	37	1.94
20418--20875	124	3.7	123	73	10	351	22	21	17	37	1.94
21226--21547	41	7.9	40	78	15	322	28	18	20	32	1.96
21281--21547	128	2.1	125	84	8	346	28	17	20	32	1.95
21840--22502	50	13.5	50	73	8	146	18	30	17	34	1.94
21897--22611	147	4.9	148	79	5	605	18	30	16	34	1.93
21952--22598	97	6.7	98	78	6	498	17	31	17	33	1.93
21952--22546	244	2.4	243	83	4	725	17	31	17	33	1.93
23566--23616	18	2.7	19	82	11	61	1	17	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23564--23626	29	2.2	28	80	8	74	6	14	0	79	0.92
29327--29636	30	10.4	30	82	8	264	37	2	25	34	1.69
29327--29636	59	5.2	59	79	8	247	37	2	25	34	1.69
29324--29636	88	3.5	87	81	8	296	37	2	25	34	1.70
29343--29635	58	4.9	60	78	7	206	37	2	26	34	1.68
35332--35599	41	6.5	41	83	2	270	39	11	22	26	1.88
35332--35628	123	2.4	123	80	8	309	39	11	23	25	1.88
35332--35639	41	7.5	41	80	8	220	38	11	23	26	1.89
40525--40784	41	6.3	41	89	0	331	38	12	22	26	1.90
40518--40814	123	2.4	123	85	2	373	38	11	23	26	1.89
40525--40814	41	7.1	42	85	4	290	37	11	24	26	1.89
40548--40814	82	3.2	81	84	4	320	38	11	24	26	1.89
45688--45984	52	5.7	52	85	2	382	37	23	12	25	1.91
48194--48246	26	2.0	26	100	0	106	50	11	18	18	1.76
51221--51385	50	3.3	50	80	3	181	34	19	23	22	1.96
51394--51517	40	3.1	40	76	11	112	31	25	19	24	1.98
51402--51522	39	3.1	38	74	15	111	31	25	18	24	1.97
53656--54145	158	3.1	158	83	2	513	22	23	22	31	1.98
55968--56010	4	10.5	4	80	14	52	27	2	0	69	1.00
56074--56153	39	2.1	39	95	0	142	46	31	0	22	1.52
57358--57480	30	4.2	28	79	9	120	40	20	4	34	1.71
57443--57612	30	5.7	30	80	4	175	37	20	5	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72599--72642	18	2.4	18	92	0	70	47	9	34	9	1.67
78360--78660	149	2.0	149	98	0	584	32	16	18	31	1.94
82782--82961	93	1.9	93	91	4	292	28	12	11	47	1.75
87555--87603	18	2.7	18	80	0	62	2	12	18	67	1.32
108889--108930	20	2.1	20	100	0	84	14	9	14	61	1.55
118919--118943	9	2.8	9	100	0	50	80	0	20	0	0.72
129145--129178	17	1.9	18	88	5	52	8	8	2	79	1.03
132880--132940	31	2.0	29	87	6	86	63	3	1	31	1.20
138194--138234	19	2.1	20	86	4	57	24	7	4	63	1.40
141795--142223	213	2.0	213	92	0	716	36	18	12	32	1.88
147373--147411	19	2.1	18	86	13	53	41	0	5	53	1.23
160360--160398	17	2.3	17	86	0	51	12	12	25	48	1.77
165836--165880	23	2.0	23	86	4	65	37	4	2	55	1.32
168156--168249	45	2.1	45	94	4	163	45	13	12	27	1.80
191129--191197	31	2.2	32	94	2	122	15	52	5	26	1.66
191387--191515	3	42.3	3	81	7	118	27	3	4	65	1.27
193077--193106	12	2.5	12	94	0	51	13	10	10	66	1.44
193992--194072	11	7.6	11	74	21	66	76	0	14	8	1.01
193994--194072	12	6.3	12	69	12	52	77	0	13	8	0.99
194025--194072	23	2.1	23	85	11	64	79	0	16	4	0.89
195109--195153	24	1.9	24	86	4	65	33	4	6	55	1.46
199495--199596	37	2.8	37	83	4	134	40	31	17	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212458--212609	48	3.2	48	64	22	129	12	20	7	59	1.58
212433--212622	95	2.0	95	98	0	371	12	19	8	59	1.58

Tables:   1

The End!