Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011249.1 Kokia drynarioides strain JFW-HI SEQ_126227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 770

Length: 1284
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40


Found at i:341 original size:17 final size:17

Alignment explanation


    Indices: 319--351  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        309 TGTTAGTAAG

                   *         
        319 CATTGTCGTTGCATTTT
          1 CATTGTCATTGCATTTT

                            
        336 CATTGTCATTGCATTT
          1 CATTGTCATTGCATTT

        352 AAATGTTAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.15, C:0.18, G:0.15, T:0.52


Consensus pattern (17 bp):   
CATTGTCATTGCATTTT
Done.