Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011257.1 Kokia drynarioides strain JFW-HI SEQ_126236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14240
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:11194 original size:24 final size:24

Alignment explanation


    Indices: 11166--11222  Score: 78
    Period size: 24  Copynumber: 2.4  Consensus size: 24

      11156 GACTAATTAT

                 *   *           *  
      11166 AGTTTGACTCAAACAAATAAATAG
          1 AGTTTAACTAAAACAAATAAACAG

                   *                
      11190 AGTTTAATTAAAACAAATAAACAG
          1 AGTTTAACTAAAACAAATAAACAG

                     
      11214 AGTTTAACT
          1 AGTTTAACT

      11223 GAAAGATTAT


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.51, C:0.11, G:0.11, T:0.28


Consensus pattern (24 bp):   
AGTTTAACTAAAACAAATAAACAG

Found at i:13179 original size:24 final size:24

Alignment explanation


    Indices: 13142--13202  Score: 86
    Period size: 24  Copynumber: 2.5  Consensus size: 24

      13132 GACTAATTAC

                 *   *           *  
      13142 AGTTTGATTCAAACAAATAAATAG
          1 AGTTTAATTGAAACAAATAAACAG

                                    
      13166 AGTTTAATTGAAACAAATAAACAG
          1 AGTTTAATTGAAACAAATAAACAG

                   *     
      13190 AGTTTAACTGAAA
          1 AGTTTAATTGAAA

      13203 GATTATTTTT


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28


Consensus pattern (24 bp):   
AGTTTAATTGAAACAAATAAACAG
Done.