Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001126.1 Kokia drynarioides strain JFW-HI SEQ_112413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2710
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39


Found at i:1598 original size:17 final size:17

Alignment explanation


    Indices: 1576--1609  Score: 52
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1566 TATTAAAAAA

                              
       1576 AATATATT-TTTACATTT
          1 AATATATTCTTTA-ATTT

                             
       1593 AATATATTCTTTAATTT
          1 AATATATTCTTTAATTT

       1610 CAAAATACAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17   12  0.75
  18    4  0.25

ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59


Consensus pattern (17 bp):   
AATATATTCTTTAATTT
Done.