Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011261.1 Kokia drynarioides strain JFW-HI SEQ_126240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5691
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32


Found at i:5648 original size:18 final size:18

Alignment explanation


    Indices: 5625--5661  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       5615 TTTGTGATCA

                              
       5625 AAATTGAAAGTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

                  *  *        
       5643 AAATTGGAATTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

             
       5661 A
          1 A

       5662 TATAAATTGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24


Consensus pattern (18 bp):   
AAATTGAAAGTGAAAGTG
Done.