genome.fa.s11263.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011263.1 Kokia drynarioides strain JFW-HI SEQ_126242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232945

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19880--19948	31	2.2	31	79	5	77	33	2	11	52	1.53
21229--21271	20	2.3	18	80	8	50	41	0	2	55	1.12
28589--28614	2	13.0	2	100	0	52	50	50	0	0	1.00
35827--35970	34	4.2	34	92	0	225	45	13	15	25	1.83
40189--40745	307	1.8	308	83	4	748	29	14	23	32	1.94
54886--54924	9	4.3	9	87	6	53	25	0	0	74	0.82
54886--54924	19	2.2	17	90	9	60	25	0	0	74	0.82
69938--69962	4	6.2	4	100	0	50	28	48	24	0	1.52
74936--74989	23	2.4	23	81	3	65	77	9	1	11	1.06
77935--78018	42	2.0	42	100	0	168	23	23	21	30	1.99
86622--86663	21	2.0	21	86	9	59	30	0	0	69	0.89
89421--89452	16	1.9	17	93	6	57	68	0	0	31	0.90
89540--89592	9	5.9	9	78	12	56	20	1	1	75	0.99
89532--89582	9	6.0	8	78	17	50	23	1	1	72	1.05
89540--89583	17	2.4	19	88	7	65	20	2	2	75	1.03
102961--103008	24	2.0	24	87	0	69	75	2	4	18	1.07
102915--103008	41	2.3	42	80	9	104	71	1	6	21	1.15
106573--106685	59	1.9	59	82	10	142	33	3	15	47	1.62
106647--106684	20	1.9	20	94	0	67	31	0	18	50	1.47
106649--106705	20	2.8	20	81	7	62	31	3	17	47	1.65
107313--107436	62	2.0	62	100	0	248	19	14	17	48	1.81
108801--108851	21	2.5	20	79	17	61	41	13	11	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112146--112175	14	2.1	14	100	0	60	53	13	0	33	1.40
117022--117068	2	24.0	2	80	4	51	46	0	4	48	1.21
118407--118452	6	7.7	6	95	0	74	0	0	60	39	0.97
118407--118452	18	2.6	18	92	0	83	0	0	60	39	0.97
122354--122378	4	6.2	4	100	0	50	76	0	0	24	0.80
125267--125291	3	8.3	3	100	0	50	32	0	0	68	0.90
127124--127158	5	7.0	5	100	0	70	40	0	20	40	1.52
128807--128857	26	2.0	26	84	7	68	41	3	1	52	1.31
128808--128857	25	2.0	26	88	11	77	42	4	2	52	1.31
128810--128864	25	2.2	25	80	9	58	43	3	1	50	1.30
132963--132998	2	18.0	2	94	0	63	50	2	0	47	1.15
137655--137706	27	2.0	26	84	3	68	23	0	3	73	1.00
148012--148083	36	2.0	36	97	0	135	38	1	36	23	1.64
158161--158234	22	3.2	22	66	23	62	20	10	13	55	1.68
158155--158261	47	2.3	47	100	0	214	20	7	12	59	1.56
167314--167356	2	21.5	2	95	0	77	46	2	0	51	1.13
169056--169093	20	1.9	20	94	0	67	50	18	15	15	1.79
171243--171267	13	1.9	13	100	0	50	72	0	0	28	0.86
175033--175070	19	2.0	19	85	10	51	34	0	0	65	0.93
177871--177927	29	1.9	29	85	3	78	57	8	1	31	1.39
191395--191435	10	3.8	10	82	17	55	41	2	0	56	1.13
191375--191421	17	2.8	17	80	0	58	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192040--192100	22	2.7	23	82	7	72	62	0	1	36	1.05
192052--192107	19	3.2	19	76	23	68	64	0	0	35	0.94
193324--193488	30	5.6	29	83	12	203	35	24	1	37	1.67
193499--193608	30	3.8	29	67	16	75	29	29	10	30	1.91
201996--202178	96	1.9	96	80	8	212	35	13	19	31	1.91
202558--202827	59	4.6	58	78	11	234	32	5	29	32	1.80
202530--202842	146	2.1	147	86	5	438	32	5	29	32	1.81
202588--202848	87	3.0	88	85	4	332	32	4	29	32	1.79
202588--202844	59	4.4	59	83	8	278	33	5	29	32	1.79
202554--202848	29	10.1	28	79	11	272	32	5	29	32	1.79
203895--203948	16	3.6	16	71	19	62	46	0	0	53	1.00
203874--203930	19	2.9	19	86	5	78	40	1	1	56	1.20
203896--203950	28	2.0	27	96	0	83	47	0	0	52	1.00
204568--204609	15	2.8	15	85	0	66	16	11	26	45	1.82
204642--204726	17	5.1	16	84	9	91	50	7	0	42	1.29
204642--204726	34	2.6	32	85	7	107	50	7	0	42	1.29
204642--204714	17	4.4	17	89	5	105	52	4	0	43	1.20
204898--204945	24	1.9	26	84	16	66	45	0	22	31	1.53
205027--205074	23	2.1	23	96	0	87	8	22	22	45	1.79
205076--205152	23	3.4	23	76	3	66	16	20	23	38	1.92
213835--213887	20	2.6	20	84	3	70	26	3	9	60	1.45
219093--219166	32	2.3	32	77	15	80	27	4	4	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221514--221569	15	3.6	16	78	7	53	75	3	17	3	1.10
225339--225366	3	9.3	3	100	0	56	35	32	0	32	1.58

Tables:   1

The End!