genome.fa.s11265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011265.1 Kokia drynarioides strain JFW-HI SEQ_126244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71647

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--46	2	23.0	2	100	0	92	50	0	0	50	1.00
70--222	30	5.2	28	83	6	155	30	3	23	42	1.72
70--222	60	2.6	58	83	11	202	30	3	23	42	1.72
1815--1870	26	2.1	27	86	3	78	32	1	25	41	1.66
2145--2302	30	5.3	30	81	7	178	41	21	4	32	1.73
2149--2301	60	2.6	59	83	6	209	42	22	3	31	1.71
7056--7113	20	2.7	21	84	7	73	65	3	0	31	1.09
15209--15270	30	2.1	30	96	0	115	25	4	12	56	1.56
17452--17502	25	2.0	25	92	0	84	27	21	1	49	1.60
21877--21995	48	2.5	48	91	0	184	30	11	17	40	1.86
25580--25713	45	3.0	45	87	0	178	38	17	25	17	1.92
27258--27298	19	2.2	19	86	0	55	46	9	0	43	1.36
28340--29036	338	2.1	339	88	3	1035	38	11	9	40	1.75
29194--29297	48	2.2	48	94	0	181	25	11	22	41	1.87
29224--29301	27	3.1	27	64	27	71	28	10	17	43	1.82
29376--29418	19	2.3	19	87	0	59	44	9	2	44	1.49
33284--33376	45	2.1	45	91	4	152	39	12	24	22	1.89
34272--34456	96	1.9	96	82	8	234	35	15	21	28	1.93
34663--34895	30	7.9	30	75	13	216	29	5	31	33	1.79
34657--34891	60	4.0	59	87	3	312	29	5	31	33	1.79
36764--36841	6	13.5	6	72	17	67	50	1	1	47	1.17
36764--36872	17	6.4	17	73	9	87	51	2	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36782--36840	11	5.2	11	83	6	73	52	1	1	44	1.21
37406--37638	30	7.9	30	75	13	216	29	5	31	33	1.79
37400--37634	60	4.0	59	87	3	312	29	5	31	33	1.79
39507--39584	6	13.5	6	72	17	67	50	1	1	47	1.17
39507--39615	17	6.4	17	73	9	87	51	2	0	44	1.22
39525--39583	11	5.2	11	83	6	73	52	1	1	44	1.21
40149--40381	30	7.9	30	75	13	216	29	5	31	33	1.79
40143--40377	60	4.0	59	87	3	312	29	5	31	33	1.79
42250--42327	6	13.5	6	72	17	67	50	1	1	47	1.17
42250--42358	17	6.4	17	73	9	87	51	2	0	44	1.22
42268--42326	11	5.2	11	83	6	73	52	1	1	44	1.21
43224--43265	19	2.2	19	86	0	57	47	4	0	47	1.23
43030--44043	347	3.0	344	88	2	1463	37	10	10	41	1.74
47429--47521	45	2.1	45	91	0	150	39	13	24	21	1.90
50603--51333	231	3.0	253	88	5	1044	42	18	15	23	1.88
54671--54747	25	3.1	25	77	5	68	51	2	1	44	1.23
57368--57496	30	4.3	30	76	7	127	35	4	24	35	1.76
57443--57507	30	2.1	30	85	2	85	40	4	18	36	1.71
58513--58545	7	5.0	7	85	14	52	72	0	0	27	0.85
58982--59166	50	3.7	50	91	0	280	23	19	17	39	1.92
59154--59306	40	3.8	40	84	2	184	25	15	24	34	1.94
59154--59305	80	1.9	79	85	4	207	25	15	25	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59128--59326	40	4.8	40	79	8	179	24	16	24	34	1.95
59162--59325	80	2.1	79	82	5	197	25	14	24	35	1.94
59383--59508	49	2.5	50	88	1	182	18	23	21	36	1.95
59383--59526	49	2.9	49	83	3	173	20	21	21	36	1.95

Tables:   1

The End!