genome.fa.s11268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011268.1 Kokia drynarioides strain JFW-HI SEQ_126247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50920

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364--466	46	2.2	46	92	0	170	29	17	19	33	1.95
2940--3128	102	1.9	101	86	5	274	34	18	19	27	1.95
5226--5279	27	2.0	26	82	13	65	25	9	5	59	1.50
7879--7921	17	2.5	17	85	7	52	48	2	6	41	1.43
9962--10201	29	8.2	29	74	9	148	37	5	21	35	1.78
11056--11100	18	2.4	19	85	10	58	71	4	0	24	1.05
11853--12336	40	12.1	40	80	5	433	24	19	24	31	1.98
12471--12957	49	9.9	49	75	6	286	19	32	14	33	1.92
12420--12910	98	5.0	99	82	4	476	20	31	14	33	1.92
12631--12915	147	1.9	148	87	3	414	21	32	14	32	1.92
12772--12988	99	2.2	97	82	3	263	20	32	14	33	1.92
18063--18129	33	2.0	33	100	0	134	14	29	11	43	1.82
21330--21388	28	2.1	29	83	3	75	35	3	25	35	1.73
21401--21530	59	2.2	59	82	8	158	40	5	21	33	1.76
21348--21643	30	10.1	29	69	12	149	38	5	22	33	1.77
21537--21593	28	2.0	28	83	12	73	35	3	24	36	1.73
21348--21646	88	3.4	87	71	12	229	39	5	22	33	1.77
22325--22361	15	2.4	15	90	4	56	10	0	8	81	0.89
26748--27463	357	2.0	357	98	0	1369	20	20	18	39	1.92
30861--31305	217	2.0	222	89	3	695	36	18	12	32	1.88
31715--31755	21	1.9	21	90	5	64	14	7	9	68	1.39
37918--38262	156	2.2	156	83	1	422	24	18	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41259--44325	216	14.2	216	83	3	3631	41	14	16	27	1.87
41258--44341	431	7.2	431	83	4	3584	41	14	16	27	1.87
41259--44325	647	4.7	647	83	4	3700	41	14	16	27	1.87
44192--44476	151	1.9	151	87	2	421	42	14	15	27	1.86
43976--44688	366	1.9	367	86	1	1009	42	14	16	26	1.87
44585--44957	185	2.0	186	85	4	513	42	16	15	25	1.87
44771--46154	216	6.5	216	87	2	2009	41	15	16	26	1.88
44771--46154	431	3.2	431	89	1	2081	41	15	16	26	1.88

Tables:   1

The End!