Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011269.1 Kokia drynarioides strain JFW-HI SEQ_126248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7525
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.34

Warning! 484 characters in sequence are not A, C, G, or T


Found at i:2681 original size:21 final size:22

Alignment explanation


    Indices: 2655--2695  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2645 CTCGTGTTTT

                     *            
       2655 TTTGT-GTGTATTGTTTGCTAA
          1 TTTGTGGTGAATTGTTTGCTAA

                         *      
       2676 TTTGTGGTGAATTTTTTGCT
          1 TTTGTGGTGAATTGTTTGCT

       2696 TAATGGTAAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    5  0.29
  22   12  0.71

ACGTcount: A:0.12, C:0.05, G:0.24, T:0.59


Consensus pattern (22 bp):   
TTTGTGGTGAATTGTTTGCTAA

Done.