genome.fa.s11272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011272.1 Kokia drynarioides strain JFW-HI SEQ_126251, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181007

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1142--1183	22	1.9	22	85	9	59	64	0	2	33	1.07
1382--1432	23	2.2	23	86	6	68	35	1	0	62	1.06
3665--3700	18	2.1	18	89	5	56	33	25	0	41	1.55
4132--4165	13	2.6	13	85	0	50	0	14	2	82	0.79
4199--4254	28	1.9	31	82	13	75	50	5	0	44	1.25
4737--4784	25	1.9	25	86	0	69	50	16	18	14	1.79
5351--5381	15	2.0	16	93	6	55	41	0	0	58	0.98
7046--7094	24	2.0	24	88	7	73	36	2	0	61	1.08
7208--7241	2	17.5	2	93	6	61	50	0	0	50	1.00
9181--9263	20	4.1	20	75	7	87	42	15	3	38	1.65
9203--9283	41	2.0	41	92	0	135	38	13	2	45	1.57
9172--9303	61	2.2	60	82	4	149	39	15	2	43	1.59
9193--9285	20	4.6	20	74	10	73	38	12	2	46	1.54
9384--9535	20	7.6	20	66	10	67	42	13	5	38	1.66
9752--9838	20	4.3	20	73	0	66	43	12	3	40	1.60
9807--9900	20	4.7	20	74	0	80	40	12	4	42	1.63
9753--9900	60	2.5	60	81	7	158	40	12	4	42	1.63
9782--9900	40	3.0	40	78	0	130	40	12	5	41	1.67
10006--10064	20	3.0	20	85	2	75	35	16	8	38	1.80
10075--10144	20	3.5	20	68	0	59	47	10	2	40	1.52
10079--10166	40	2.2	40	81	4	97	44	12	3	39	1.59
17786--17820	2	17.0	2	94	5	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19695--19719	12	2.1	12	100	0	50	52	0	24	24	1.48
27019--27128	57	1.9	59	87	7	163	29	14	10	46	1.77
28668--28705	9	4.6	8	84	15	51	10	0	2	86	0.66
28667--28707	16	2.5	17	84	11	59	14	0	2	82	0.76
30549--30607	30	1.9	32	86	6	86	47	5	18	28	1.70
32249--32282	16	2.1	16	88	0	50	67	0	0	32	0.91
43512--43566	16	3.3	16	78	14	58	60	0	9	30	1.28
52778--52803	5	5.2	5	100	0	52	80	0	0	19	0.71
55055--55124	19	3.8	18	75	19	63	61	2	2	32	1.25
55066--55122	17	3.2	18	78	9	55	63	3	3	29	1.28
56164--56241	31	2.5	30	85	4	102	39	15	3	41	1.65
61469--61618	75	2.0	75	92	0	246	24	16	26	32	1.96
62827--62897	27	2.6	27	82	4	81	61	2	0	35	1.10
62807--62892	9	9.4	9	73	18	63	63	4	0	31	1.14
62845--62894	19	2.8	18	79	8	57	68	2	0	30	1.01
63750--63815	8	8.4	8	77	14	66	69	0	0	30	0.88
63759--63816	13	4.5	13	68	20	50	70	0	0	29	0.87
63751--63813	30	2.1	30	100	0	126	69	0	0	30	0.88
63762--63805	22	2.0	22	90	0	70	68	0	0	31	0.90
63750--63812	17	3.9	17	76	16	71	69	0	0	30	0.88
63814--63849	18	1.9	19	94	5	65	36	2	11	50	1.53
68787--68862	31	2.6	30	84	12	88	56	10	13	19	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75693--75885	69	2.8	67	82	7	201	12	22	20	44	1.86
75693--75886	23	8.4	23	80	7	182	12	22	20	43	1.86
82899--82949	20	2.6	19	82	11	59	25	0	5	68	1.12
82904--82949	19	2.3	20	79	20	53	26	0	6	67	1.15
85144--85176	17	1.9	17	100	0	66	48	6	0	45	1.27
90716--90751	14	2.6	14	90	0	54	33	25	2	38	1.70
91299--91332	14	2.4	14	90	0	50	35	23	14	26	1.94
96014--96064	12	4.3	12	80	5	59	7	3	15	72	1.23
96020--96064	23	2.0	23	86	0	63	6	4	15	73	1.21
102853--102896	23	2.0	22	81	4	52	34	0	4	61	1.16
108173--108244	31	2.4	30	79	4	81	36	8	11	44	1.70
108194--108252	31	1.9	31	82	0	73	35	8	11	44	1.72
119412--119469	29	2.0	28	83	3	71	65	8	3	22	1.36
135474--135515	20	2.0	21	86	4	59	50	9	14	26	1.73
137472--137509	18	2.1	18	90	9	60	50	15	10	23	1.75
147958--148020	21	3.0	22	66	15	60	53	4	1	39	1.31
161901--162113	106	2.0	106	94	1	374	41	19	20	18	1.91
164274--164312	15	2.4	16	83	8	53	46	0	0	53	1.00
174936--175026	6	15.5	6	67	17	57	38	3	2	56	1.28
174936--175026	17	5.2	17	80	10	94	38	3	2	56	1.28
174936--175017	37	2.3	35	89	4	119	37	3	2	56	1.30
175756--175796	15	2.7	15	92	0	64	56	12	4	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176864--177180	29	10.9	28	69	15	182	36	32	2	28	1.71
176864--177177	58	5.4	57	80	3	286	36	32	2	28	1.71
177797--177830	16	2.1	16	100	0	68	29	5	29	35	1.81
177801--177837	16	2.3	16	90	0	56	37	10	24	27	1.88

Tables:   1

The End!