Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011280.1 Kokia drynarioides strain JFW-HI SEQ_126259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2350
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34


Found at i:625 original size:18 final size:19

Alignment explanation


    Indices: 583--625  Score: 52
    Period size: 18  Copynumber: 2.3  Consensus size: 19

        573 GCCAGTCGTG

                               
        583 CTTTTCTCATCTCTCGCTT
          1 CTTTTCTCATCTCTCGCTT

             *            **   
        602 CCTTTCT-ATCTCTTTCTT
          1 CTTTTCTCATCTCTCGCTT

                  
        620 CTTTTC
          1 CTTTTC

        626 CTTCACATTT


Statistics
Matches: 20,  Mismatches: 4, Indels: 1
        0.80            0.16        0.04

Matches are distributed among these distances:
  18   14  0.70
  19    6  0.30

ACGTcount: A:0.05, C:0.35, G:0.02, T:0.58


Consensus pattern (19 bp):   
CTTTTCTCATCTCTCGCTT
Done.