Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011285.1 Kokia drynarioides strain JFW-HI SEQ_126264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51725
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Found at i:302 original size:23 final size:23
Alignment explanation
Indices: 276--321 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
266 TTCAAGGACC
*
276 AAAAGTTGTTTACAAAATGACAA
1 AAAAGTTATTTACAAAATGACAA
*
299 AAAAGTTATTTTCAAAATGACAA
1 AAAAGTTATTTACAAAATGACAA
322 CTATTTAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (23 bp):
AAAAGTTATTTACAAAATGACAA
Found at i:769 original size:214 final size:213
Alignment explanation
Indices: 299--5661 Score: 4482
Period size: 215 Copynumber: 25.3 Consensus size: 213
289 AAAATGACAA
* * * * * *
299 AAAAGTTATTTTCAAAATGACAACTATTTAGACCAAAAGATGAGATTTCCTAAGCTTGGAATGTT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCC-AAGCATGGAATGTT
* * * *
364 -GAATAAATTTCTCGAAGGAATGGTTCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
65 CGAA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAAC
* ** * * * * *
428 TCCTAAAAGTTTGTCATCTTCGGATGTTCGGCCT-AGAACCAAGAGAGAAACTATTCTCA-CATG
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GACTGAGAACCAAAAGAGAAACAATTCTCACCA-A
* * *
491 AATAAATTTTTAATTTAAAGACA
191 AATAAGTTTTTAATTCAAAGACC
* *
514 AAAAGTTGTTTACATAATGGA-AACTATTTAGA-CTAAATGATGCGATTTCAAGAGCATGGAATG
1 AAAAGTTGTTTACAAAAT-GACAACTATTTAGACCT-AATGATGCGATTTCCA-AGCATGGAATG
** * *
577 TTCTTAAAATTGCTCGAAGGAAGGGATCGTCTTGAATATTTTAAGGAATCAAAGTTAT-AAAGTA
63 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAG-A
* *
641 ACTCGTAAAAGTTT-TCAAGTTCGAAAGTTCGACTGAGAACCAAAAGAAAAACAATTCTCACCAA
126 ACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAA
705 AATAAGTTTTTAATTCAAAGACC
191 AATAAGTTTTTAATTCAAAGACC
* * * *
728 AAAAGTTGTTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACTGTA
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGAT-TTCCAAGCATGGAATGT-
** * * *
793 T-GGGAAATTGCTCGAAAGAATGGATCGTCCTGAATACTTTAATGAACAAAAGTTATAAAAGAAC
64 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAAC
* * ** * * * * *
857 TCGTTAAAGTTTGTCAATTTCATAAATTCAACCGAGAA-CAAAGAAAGAAACAATTCT-AACATA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAA-AGAGAAACAATTCTCACCA-A
* * *
920 GATAACTTTTT--TT----TA-C
191 AATAAGTTTTTAATTCAAAGACC
* *
936 AAAA--TG--T-C--AAT-----CTATTTAGAAC-AAGTGATGCGATTTCCCGAGCATGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAA-TGATGCGATTT-CCAAGCATGGAATGT
* * *
988 TCAAAAAATTGCTAGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACATAAGTTA-AAAAGGAA
64 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACA-AAGTTATAAAA-GAA
* * * * *
1052 CTCGTGAAAGTTTTTCAAGTTCGGAAGTTCGGCTGAGAACCAATAGAGAAACAATTCTCACCTAA
127 CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAA
* * *
1117 ATAAGTTGTTAATTGAAAAACC
192 ATAAGTTTTTAATTCAAAGACC
* * * * * * *
1139 AAAAGTAGTTTACAGAATGACAACAATTTAGACCTAATAATGTGATTTCCCAAGCATGGACTGTA
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTT-CCAAGCATGGAATGTT
* * *
1204 C-AATAAATTGCT-GAAGGAATGGATCGTCTTGAATACTTTAATGAACAAAATT-T---ATAACT
65 CGAA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACT
* * * ** * * * *
1263 TG-AAAAATTTGTAAAGTT-TAAAGTTTGGCCGAGAACGAAGAA-AGAAACAATTCTCA-CATAA
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAA-AAGAGAAACAATTCTCACCA-AA
* * *
1324 AGAATTTTTTAATTGAAAGACC
192 ATAAGTTTTTAATTCAAAGACC
* * *
1346 AAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATACGATTGCCAAGCATGGAATGTTC
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCAAGCATGGAATGTTC
* * *
1411 GAAAAATTGCTCGAAGGAATAGATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
66 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTC
* * * ** * ** *
1476 GTAAAAGTTTGTCAACTTCGAAAGTTCGGCCCAGAACCAAGAGAGAAATTATTCTCACCTAAATA
130 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAAATA
1541 AGTTTTTAATTCAAAGACC
195 AGTTTTTAATTCAAAGACC
* * * * *
1560 AAAAGTTGTTTACACAATAACAACTATTTAGACCGAATGATGTGATTTCTCGAGCATGG-ATGTT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTC-CAAGCATGGAATGTT
* *
1624 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGATTACTTTAAGGAACCGAAGTTATAAAAGAACT
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACT
* * ** * ** * * *
1689 CTTAAAAGTTAGTCAAGTTCAAAAGTTCG-GTCGAGAACCATGAGAGAAATAATTCCCACCTAAA
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGACT-GAGAACCAAAAGAGAAACAATTCTCACCAAAA
1753 TAAGTTTTTAATTCAAA-AGCC
193 TAAGTTTTTAATTCAAAGA-CC
* * *
1774 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTTCCAAGCATGGACTGTA
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGA-TTTCCAAGCATGGAATGTT
* * *
1839 C-AGAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAGAAGAA-
65 CGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAAC
** ** * *
1902 TATTTAAAAGTTTGTCAAGTT-TAAAGTTTGGCTGAGAACCAAGAA-AGAAACAATTCTCA-CAT
128 T-CGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAA-AAGAGAAACAATTCTCACCA-
* *
1964 AAATAATTTTTTAATTTAAAGACC
190 AAATAAGTTTTTAATTCAAAGACC
* * ** *
1988 AAAAGTTGTTTACAAAATGACAACTTTTTAG-TCTAAATGATAAGATTTCCTAAGCTTGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCC-AAGCATGGAATGT
* * * *
2052 TC-AGAAAATTGCTCGAAGGAGTGGTTTGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
64 TCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAA
* * * * * * *
2116 CTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCT-AGAACCAAGAGAAAAACTATTCTCACCTA
127 CTCGTAAAAGTTTGTCAAGTTCGGAAG-TTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAA
*
2180 AATAAGTTTTAAATTCAAAGACC
191 AATAAGTTTTTAATTCAAAGACC
* * * * *
2203 AAAAGTTGTTTACATAATGAAAACTATTTAGA-CTAAATGATGCGATTTCTAGAGCATGAAATTT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCA-AGCATGGAATGT
** * * * * *
2267 TCTTAAAATTGCTCAAAGGAATGGATTGTCTTTAATAGTTTAAGGAATCAAGGTTATAAAAGAAC
64 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAAC
* * * *
2332 TCGTAAAAGTTTTTCAAGTTCGAAAGTTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAAA
2397 TAAGTTTTTAATTCAAAGACC
193 TAAGTTTTTAATTCAAAGACC
* * * * *
2418 AAAAGTAGTTTAAAAAATGACAACTCTATTTAGACCTAAAGATGTGATTTCCCAAGCATGGACTG
1 AAAAGTTGTTTACAAAATGACAA--CTATTTAGACCTAATGATGCGATTT-CCAAGCATGGAATG
* * * * * *
2483 TAT-GGAAAATTGCTTGAATGAATGGATCGTCTTGACTACTTTAATGAACAAAATTTATAAAAGA
63 T-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGA
* * * * * *
2547 ACTCGTTAAAGTTTGTCAAGATT-GGAAGTTCAACCGAGAA-CAAAGAAAGAAACAATTGT-AAC
126 ACTCGTAAAAGTTTGTCAAG-TTCGGAAGTTCGACTGAGAACCAAA-AGAGAAACAATTCTCACC
2609 ATAAATAACAGTTTTT--TT-----A-C
189 A-AAAT-A-AGTTTTTAATTCAAAGACC
* * *
2629 AAAA--TG---AC--AAT-----CTATTTAGAAC-AATTGATGCTATTTCCCGAGCATGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAA-TGATGCGATTT-CCAAGCATGGAATGT
* * * * *
2681 TCGAAAAATTGCTGGAAGGAATGGATTGTCTTGAATTCTTTAAGGTACAGAAGTTAAAAAAGAAC
64 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACA-AAGTTATAAAAGAAC
* ** * *
2746 TCATAAAAGTTTGTCAAGTTC----G-T---CTGAGAATGAATAGAGAAACAATTCTCACCTAAA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAAA
*
2803 TAAGTTTTTAATTCAAA-ATCG
193 TAAGTTTTTAATTCAAAGA-CC
* * * *
2824 AAAAGTAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTA
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTT-CCAAGCATGGAATGTT
* * *
2889 C-AGAAAATTACTCGATGGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAAAAGAAC
65 CGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAAC
** *** * *
2953 TTATAAAAGTTTGTCAA-TTTTAAAGTTCGGCTGAGAACCAAGAA-AGAAACAATTCTTA-CATA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAA-AAGAGAAACAATTCTCACCA-A
* *
3015 AAGAATTTTTTAATTCAAAGACC
191 AATAAGTTTTTAATTCAAAGACC
* * * * * * *
3038 AAGAGTTTTTTACAAAATGACAACTGTTTAGACCAAAAGATGAGATTTCCTAAGCGTGGAATGTT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCC-AAGCATGGAATGTT
* * *
3103 C-AGAAAATTGCTGGAAGGAATGGTTCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
65 CGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAAC
* * * * * ***
3167 TCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCT-AGAACCAAGAGAGAAACTATTCTCACCTGG
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GACTGAGAACCAAAAGAGAAACAATTCTCACCAAA
* *
3231 ATAAGTTATTAATTTAAAGACC
192 ATAAGTTTTTAATTCAAAGACC
* * * * *
3253 AAAAGTTGTTTACATAAT-AGCAACAATTTAGA-CTAAATGTTGCGATTTCTAGAGCGTGGAATG
1 AAAAGTTGTTTACAAAATGA-CAACTATTTAGACCT-AATGATGCGATTTCCA-AGCATGGAATG
** * * *
3316 TTCTTAAAATTGCTCGAAGGAAGGGATCATCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAA
63 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAA
* * * * * *
3381 CTCATAAAAGTTTTTCAAGTTCGGAAGTTCAACCGAGAACCAAAAGAGAGACAATTCTCACCTAA
127 CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAA
*
3446 ATAAGTTTTTAATTAAAAGACC
192 ATAAGTTTTTAATTCAAAGACC
** * * * *
3468 AAAAGTAATTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACTGTA
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGAT-TTCCAAGCATGGAATGT-
** ** *
3533 T-GGGAAATTGCTCAGAA-GAATGGATCGTCCAGAATACTTTAATGAACAAAAGTTATAAAAGAA
64 TCGAAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAA
* * * * *
3596 CTCGTTAAAGTTTGTCAAGTTCGAAAGTTC-ATCCGAGAA-CAAAGAAAGAAACAATTCT-AACA
127 CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CTGAGAACCAAA-AGAGAAACAATTCTCACCA
* ***
3658 TAAATAACTTTTT--TT--TTTA-C
190 -AAATAAGTTTTTAATTCAAAGACC
* *
3678 -AAAG-TG---AC--AATG-----TATTTAGAAC-AAGTGATGCGATTTCCCGAGCATGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAA-TGATGCGATTT-CCAAGCATGGAATGT
* * * *
3730 TCAAAAAATTGCTCAAAGGAATGGATCGTCTTGAATAC--T-ATGAACAAAATTTATAAAAGAAC
64 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAAC
** * ***
3792 TTATAAAAGTTTGTAAAGTT-TTTAGTTCGA-TCGAGAACCAAGAA-AGAAACAATTCTCA-CAT
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACT-GAGAACCAA-AAGAGAAACAATTCTCACCA-
* * *
3853 AAAGAATTTTTTAATTCAAGGACC
190 AAATAAGTTTTTAATTCAAAGACC
* *
3877 AAAAGTTGTTTGCAAAATGACAAAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAAGATG
1 AAAAGTTG-TT------T-AC--AAAA--TG---AC---A--A---CTATTTAGACCTAATGATG
* * * * * * * *
3942 AGATTTCCTAAGCTTGCATTGTT-AAATAAATTTCTCGAAGGAATGGTTCATCTTGAATACTTTA
43 CGATTTCC-AAGCATGGAATGTTCGAA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* ** * *
4006 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCATCTTCGGATGTTCGGCCT-AGAACCA
106 AGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GACTGAGAACCA
* * ** *
4070 AGAGAGAAACTATTCTCACCTGAATAAGTTTTTAATTCATAGACC
169 AAAGAGAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACC
* * *
4115 AAAAGTTGTTTACATAATGGCAACTATTTAGA-CTAAATGATGCGATTTCTAGAGCATGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCA-AGCATGGAATGT
** * *
4179 TCTTAAAATTGCTCGAAGGAATGGATCATCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAAC
64 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAAC
* * *
4244 TCGTAAAAGTTTTTCAAGTTCGGAAGTTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAA
128 TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAAA
4309 TAAGTTTTTAATTCAAAGACC
193 TAAGTTTTTAATTCAAAGACC
* * * * *
4330 AAAAGTAGTTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACT-TT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGAT-TTCCAAGCATGGAATGTT
* ** * * * * * *
4394 ATGGGAAATTGCTCAAAAGAATGGATCGTCCTGAATACTTTAATGAAAAAAGTTTTAAAAGAACT
65 -CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACT
* * * *
4459 CGTTAAAGTTTGTCAAGTTCGGATGTTC-ATCTGAGAA-CAAAGAAAGAAACAATTCT-AACATA
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CTGAGAACCAAA-AGAGAAACAATTCTCACCA-A
*
4521 AATAACTTTTT--TT--------
191 AATAAGTTTTTAATTCAAAGACC
* * * *
4534 -----TT-TTTACAAAATGACATTCTATTTAGAAC-AAGTGATGAGATTTCCCGAGCATGGAATG
1 AAAAGTTGTTTACAAAATGACA-ACTATTTAGACCTAA-TGATGCGATTT-CCAAGCATGGAATG
* * *
4592 TT-GAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAAGAGAAGTTATAGAAGA
63 TTCG-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACA-AAGTTATAAAAGA
* ** * ** * *
4656 ACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCAAGAACTAGGAGAGAAATAATTCTCACCTA
126 ACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAA
*
4721 AATAAGTTTTTAATTCAAAAACC
191 AATAAGTTTTTAATTCAAAGACC
* * * *
4744 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGAGATTTCCCAAGCATGGACTATA
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTT-CCAAGCATGGAATGTT
* * * *
4809 CGAAAAATTGCTCGAAGGAATGGATTGCCATGAATACTTTAAAGAACGAAAGTTATAAAAGAACT
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACT
* * ** * * * *
4874 TGTAAAAGTTAGTCAAGTT-TAAAGTTTGGCCGAGAACCAAGAA-AAAAACAATTCTCA-CATAA
129 CGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAA-AAGAGAAACAATTCTCACCA-AA
** * *
4936 GGAATTTTTTAATTCAATGACC
192 ATAAGTTTTTAATTCAAAGACC
* * * * * * * *
4958 AAAAGTTGTTTACAAAATGAAAACTGTTTAGAACAAATGATACAATTTTCGAAGCACGGAATGTT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGA-TTTCCAAGCATGGAATGTT
* * *
5023 CAAAAAACTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTTTAAAAGAACT
65 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACT
* * ** *
5088 TGTAAAAGTTTGTCAAGTTCGGAAGCTT-GGCCAAGAACCAAGAGAGAAACAATTCTCA-CATAA
129 CGTAAAAGTTTGTCAAGTTCGGAAG-TTCGACTGAGAACCAAAAGAGAAACAATTCTCACCA-AA
* *
5151 ATAACATTTTT-ATTCAAGGACC
192 ATAA-GTTTTTAATTCAAAGACC
* * * * *
5173 AAAAGTTGTTTACAAAATGACAATCTATTTGGAAC-AATTTATGCGATTCCCCAAGCATAGAATG
1 AAAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATT-TCCAAGCATGGAATG
* * * * *
5237 TTCGAAAAATTGCTCGAAGGAATGGATCATGTTGTATACTTTATGGAACCGAAGTTA-AAAAGAA
63 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAA
* * * * * * * * * * *
5301 CTTGTAAAAGTTTGTCAACTTCGGAAGTTTG-GTGTGAACTAAGAGAGGATCTATTATCA-CATA
127 CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCA-A
*
5364 AATATGTTTTTAATTCAAAGACC
191 AATAAGTTTTTAATTCAAAGACC
* * **
5387 AAAAGTTGTTTATAAAATGACAACTATTTAGACC-ATATGATGCAATTTCTTGAGCATGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTA-ATGATGCGATTTC-CAAGCATGGAATGT
* * * *
5451 TCGGAAAATTG-TGCGAAGGAATGGATCGTCTTGAATACTTTAATGAATCGATGTTATAAAAGAA
64 TCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAA
* * * * *
5515 CTCGTAAAAGTTTGTCAAGTTGGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCAGCTAA
127 CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAA
5580 ATAAGTTTTTAATTCAAAGACC
192 ATAAGTTTTTAATTCAAAGACC
* * * *
5602 AAAAGTAT-TTTATAAAATGACAACTATTTAGATCAAATGATGCGATTTCCCGAGCATGGA
1 AAAAGT-TGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTT-CCAAGCATGGA
5662 TGATACGAGT
Statistics
Matches: 4178, Mismatches: 696, Indels: 548
0.77 0.13 0.10
Matches are distributed among these distances:
187 7 0.00
188 1 0.00
189 24 0.01
190 4 0.00
192 1 0.00
193 2 0.00
194 35 0.01
195 57 0.01
196 140 0.03
197 111 0.03
198 77 0.02
199 69 0.02
200 76 0.02
201 8 0.00
202 6 0.00
203 9 0.00
204 4 0.00
205 2 0.00
206 30 0.01
207 223 0.05
208 28 0.01
209 12 0.00
210 6 0.00
211 7 0.00
212 13 0.00
213 128 0.03
214 1186 0.28
215 1457 0.35
216 142 0.03
217 128 0.03
218 11 0.00
219 7 0.00
220 1 0.00
223 1 0.00
226 2 0.00
228 3 0.00
230 2 0.00
231 1 0.00
233 5 0.00
234 57 0.01
235 2 0.00
236 1 0.00
237 36 0.01
238 53 0.01
239 2 0.00
240 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (213 bp):
AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCAAGCATGGAATGTTC
GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTCG
TAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAAAGAGAAACAATTCTCACCAAAATAA
GTTTTTAATTCAAAGACC
Found at i:2116 original size:429 final size:430
Alignment explanation
Indices: 299--5661 Score: 4925
Period size: 429 Copynumber: 12.6 Consensus size: 430
289 AAAATGACAA
* * * * * *
299 AAAAGTTATTTTCAAAATGACAACTATTTAG-ACCAAAAGATGAGATTTCCTAAGCTTGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* * * * **
363 TGA-ATAAATTTCTCGAAGGAATGGTTCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
66 TCAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA
* ** * * * * *
427 CTCCTAAAAGTTTGTCATCTTCGGATGTTCGGCCTAGAACCAAGAGAGAAACTATTCTCACATGA
130 CTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAA
* * * *
492 ATAAATTTTTAATTTAAAGACAAAAAGTTGTTTACATAATGGA-AACTATTTAGA-CTAAATGAT
195 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-GACAACTATTTAGACCT-AATGAT
* * * *
555 GCGATTT-CAAGAGCATGGAATGTTCTTAAAATTGCTCGAAGGAAGGGATCGTCTTGAATATTTT
258 GCGATTTCCCA-AGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
619 AAGGAATC-AAAGTTAT-AAAGTAACTCGTAAAAGTTT-TCAAGTTCGAAAGTTCGACTGAGAAC
321 AAGGAA-CAAAAGTTATAAAAG-AACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAAC
* * *
681 CAAAAGAAAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACC
384 CAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * *
728 AAAAGTTGTTTAAAAAATGACAACTATTTAGACCT-AATGATGTGATCTCCCAAGCATGGACTGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* * * * *
792 AT-GGGAAATTGCTCGAAAGAATGGATCGTCCTGAATACTTTAATGAACAAAAGTTATAAAAGAA
66 -TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA
* ** * ** * * * *
856 CTCGTT-AAAGTTTGTCAATTTCATAAATTCAACCGAGAACAAAGAAAGAAACAATTCTAACATA
130 CTC-TTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTA
* * * *
920 GATAACTTTTT--TT----TA-CAAAA--TG--T-C--AAT-----CTATTTAGAAC-AAGTGAT
194 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAA-TGAT
* * * *
965 GCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTAGAAGGAATGGATCGTCTTGAATTCTTTA
258 GCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * * *
1030 AGGAACATAAGTTA-AAAAGGAACTCGTGAAAGTTTTTCAAGTTCGGAAGTTCGGCTGAGAACCA
322 AGGAACAAAAGTTATAAAA-GAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCA
* * * *
1094 ATAGAGAAACAATTCTCACCTAAATAAGTTGTTAATTGAAAAACC
386 AGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
1139 AAAAGTAGTTTACAGAATGACAACAATTTAGACCT-AATAATGTGATTTCCCAAGCATGGACTGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* * *
1203 ACA-ATAAATTGCT-GAAGGAATGGATCGTCTTGAATACTTTAATGAACAAAA-TT-T---ATAA
66 TCAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA
* * * ** * * * *
1261 CT-TGAAAAATTTGTAAAGTT-TAAAGTTTGGCCGAGAACGAAGAAAGAAACAATTCTCACATAA
130 CTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAA
* * * * *
1324 AGAATTTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATAC
195 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGC
* * * *
1389 GA-TTGCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATAGATCATCTTAAATACTTTAAG
260 GATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * **
1453 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCCAGAACCAAGA
324 GAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAAGA
**
1518 GAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
389 GAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * ** * * *
1560 AAAAGTTGTTTACACAATAACAACTATTTAG-ACCGAATGATGTGATTTCTCGAGCATGG-ATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* **
1623 TC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGATTACTTTAAGGAACCGAAGTTATAAAAGAA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA
* ** * * * *
1687 CTCTTAAAAGTTAGTCAAGTTCAAAAGTTCGGTCGAGAACCATGAGAGAAATAATTCCCACCTAA
130 CTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAA
1752 ATAAGTTTTTAATTCAAA-AGCCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATG
195 ATAAGTTTTTAATTCAAAGA-CCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATG
* * * * *
1816 TGATTTTCCAAGCATGGACTGTACAGAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAA
259 CGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * ** * *
1881 TGAACAAAAGTTATAGAAGAA-TATTTAAAAGTTTGTCAAGTT-TAAAGTTTGGCTGAGAACCAA
323 GGAACAAAAGTTATAAAAGAACT-CGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAA
* * * *
1944 GAAAGAAACAATTCTCACATAAATAATTTTTTAATTTAAAGACC
387 GAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * *
1988 AAAAGTTGTTTACAAAATGACAACTTTTTAG-TCTAAATGATAAGATTTCCTAAGCTTGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* * * **
2052 TCAGAAAATTGCTCGAAGGAGTGGTTTGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC
* * * * * *
2117 TCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCTAGAACCAAGAGAAAAACTATTCTCACCTAAA
131 TCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAAA
* * *
2182 TAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACATAATGAAAACTATTTAGA-CTAAATGATGC
196 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGC
* * * * * * * *
2246 GATTT-CTAGAGCATGAAATTTTCTTAAAATTGCTCAAAGGAATGGATTGTCTTTAATAGTTTAA
260 GATTTCCCA-AGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * *
2310 GGAATC-AAGGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGAAAGTTCGACCGAGAACCAA
323 GGAA-CAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAA
*
2374 AAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
387 GAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * *
2418 AAAAGTAGTTTAAAAAATGACAACTCTATTTAGACCTAAA-GATGTGATTTCCCAAGCATGGACT
1 AAAAGTTGTTTACAAAATGACAA--CTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAAT
* * * * * *
2482 GTAT-GGAAAATTGCTTGAATGAATGGATCGTCTTGACTACTTTAATGAACAAAATTTATAAAAG
64 GT-TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAG
** * * *
2546 AACTCGTT-AAAGTTTGTCAAGATT-GGAAGTTCAACCGAGAACAAAGAAAGAAACAATTGT-A-
128 AACTC-TTAAAAGTTTGTCAAG-TTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCAC
* * *
2607 --ACAT-A------AA-T---A-A-C---AGTTTTTTTACAAAATGACAATCTATTTAGAAC-AA
191 CTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAA-CTATTTAGACCTAA
* * * * *
2653 TTGATGCTATTTCCCGAGCATGGAATGTTCGAAAAATTGCTGGAAGGAATGGATTGTCTTGAATT
254 -TGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * *
2718 CTTTAAGGTACAGAAGTTAAAAAAGAACTCATAAAAGTTTGTCAAGTTC----G-T---CTGAGA
317 CTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGA
** * *
2775 ATGAATAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA-ATCG
382 ACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CC
* * * *
2824 AAAAGTAGTTTACAAAATGACAACTATTTAGACCT-AATGATGTGATTTCCCAAGCATGGACTGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* * * *
2888 ACAGAAAATTACTCGATGGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC
*** * * * *
2953 T-TATAAAAGTTTGTCAA-TTTTAAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTTACATAA
131 TCT-TAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAA
* * * * * * * *
3016 AGAATTTTTTAATTCAAAGACCAAGAGTTTTTTACAAAATGACAACTGTTTAGACCAAAAGATGA
195 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGC
* * * *
3081 GATTTCCTAAGCGTGGAATGTTCAGAAAATTGCTGGAAGGAATGGTTCGTCTTGAATACTTTAAG
260 GATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
** * * *
3146 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCT-AGAACCAAG
324 GAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGG-CTGAGAACCAAG
* ** * *
3210 AGAGAAACTATTCTCACCTGGATAAGTTATTAATTTAAAGACC
388 AGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
3253 AAAAGTTGTTTACATAAT-AGCAACAATTTAG-ACTAAATGTTGCGATTT-CTAGAGCGTGGAAT
1 AAAAGTTGTTTACAAAATGA-CAACTATTTAGAACTAAATGATGAGATTTCCCA-AGCATGGAAT
** * * *
3315 GTTCTTAAAATTGCTCGAAGGAAGGGATCATCTTGAATAGTTTAAGGAATC-AAAGTTATAAAAG
64 GTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAAGTTATAAAAG
* * ** * *
3379 AACTCATAAAAGTTTTTCAAGTTCGGAAGTTCAACCGAGAACCAAAAGAGAGACAATTCTCACCT
128 AACTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCT
* ** *
3444 AAATAAGTTTTTAATTAAAAGACCAAAAGTAATTTAAAAAATGACAACTATTTAGACCTAATGAT
193 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGAT
* * * * * **
3509 GTGATCTCCCAAGCATGGACTGTATGGGAAATTGCTCAGAA-GAATGGATCGTCCAGAATACTTT
258 GCGATTTCCCAAGCATGGAATGT-TCGAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTT
* * ** * *
3573 AATGAACAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAA
321 AAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCA
* * * * ***
3638 AGAAAGAAACAATTCTAACATAAATAACTTTTT--TT--TTTA-C
386 AGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * *
3678 -AAAG-TG---AC--AATG-----TATTTAGAAC-AAGTGATGCGATTTCCCGAGCATGGAATGT
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
* * * *
3730 TCAAAAAATTGCTCAAAGGAATGGATCGTCTTGAATAC--T-ATGAACAAAATTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC
* *** ** * *
3792 T-TATAAAAGTTTGTAAAGTT-TTTAGTTCGATCGAGAACCAAGAAAGAAACAATTCTCACATAA
131 TCT-TAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAA
* * *
3855 AGAATTTTTTAATTCAAGGACCAAAAGTTGTTTGCAAAATGACAAAAAAGTTGTTTACAAAATGA
195 ATAA--GTTT--TT----------AA-----TT-C-AAA-GAC-CAAAAGTTGTTTACAAAATGA
* * * * * * * ** *
3920 CAACTATTTAGACCAAAAGATGAGATTTCCTAAGCTTGCATTGTTAAATAAATTTCTCGAAGGAA
237 CAACTATTTAGACCTAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAATTGCTCGAAGGAA
* * ** **
3985 TGGTTCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCATCTTC
301 TGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
* * * * *
4050 GGATGTTCGGCCT-AGAACCAAGAGAGAAACTATTCTCACCTGAATAAGTTTTTAATTCATAGAC
366 GAAAGTTCGG-CTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC
4114 C
430 C
* * * *
4115 AAAAGTTGTTTACATAATGGCAACTATTTAG-ACTAAATGATGCGATTT-CTAGAGCATGGAATG
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCA-AGCATGGAATG
** * *
4178 TTCTTAAAATTGCTCGAAGGAATGGATCATCTTGAATAGTTTAAGGAATC-AAAGTTATAAAAGA
65 TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAAGTTATAAAAGA
* * * *
4242 ACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTA
129 ACTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTA
* *
4307 AATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTAAAAAATGACAACTATTTAGACCTAATGATG
194 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATG
* * * * * * * * *
4372 TGATCTCCCAAGCATGGACTTTATGGGAAATTGCTCAAAAGAATGGATCGTCCTGAATACTTTAA
259 CGATTTCCCAAGCATGGAATGT-TCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * * ** *
4437 TGAA-AAAAGTTTTAAAAGAACTCGTTAAAGTTTGTCAAGTTCGGATGTTCATCTGAGAACAAAG
323 GGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAAG
* * * *
4501 AAAGAAACAATTCTAACATAAATAACTTTTT--TT--------
388 AGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * *
4534 -----TT-TTTACAAAATGACATTCTATTTAGAAC-AAGTGATGAGATTTCCCGAGCATGGAATG
1 AAAAGTTGTTTACAAAATGACA-ACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATG
* * * * * *
4592 TTGAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAAGAGAAGTTATAGAAGAA
65 TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA
* * * * *
4657 CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCAAGAACTAGGAGAGAAATAATTCTCACCTAA
130 CTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAA
* *
4722 ATAAGTTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGA
195 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGC
* * * * * * *
4787 GATTTCCCAAGCATGGACTATACGAAAAATTGCTCGAAGGAATGGATTGCCATGAATACTTTAAA
260 GATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * *
4852 GAACGAAAGTTATAAAAGAACTTGTAAAAGTTAGTCAAGTT-TAAAGTTTGGCCGAGAACCAAGA
324 GAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAAGA
* * * ** * *
4916 AAAAAACAATTCTCACATAAGGAATTTTTTAATTCAATGACC
389 GAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
4958 AAAAGTTGTTTACAAAATGAAAACTGTTTAGAAC-AAATGAT-ACAATTTTCGAAGCACGGAATG
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGA-GATTTCCCAAGCATGGAATG
* * *
5021 TTCAAAAAACTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTTTAAAAGAA
65 TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA
* *
5086 CT-TGTAAAAGTTTGTCAAGTTCGGAAGCTT-GGCCAAGAACCAAGAGAGAAACAATTCTCACAT
130 CTCT-TAAAAGTTTGTCAAGTTCGGAAG-TTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCT
* * * *
5149 AAATAACATTTTT-ATTCAAGGACCAAAAGTTGTTTACAAAATGACAATCTATTTGGAAC-AATT
193 AAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-T
* * * * * *
5212 TATGCGATTCCCCAAGCATAGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATGTTGTATACT
255 GATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* ** * * * * *
5277 TTATGGAACCGAAGTTA-AAAAGAACTTGTAAAAGTTTGTCAACTTCGGAAGTTTGG-TGTGAAC
319 TTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAAC
* * * * * * *
5340 TAAGAGAGGATCTATTATCACATAAATATGTTTTTAATTCAAAGACC
384 CAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * ***
5387 AAAAGTTGTTTATAAAATGACAACTATTTAG-ACCATATGATGCA-ATTTCTTGAGCATGGAATG
1 AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATG-AGATTTCCCAAGCATGGAATG
* * * *
5450 TTCGGAAAATTG-TGCGAAGGAATGGATCGTCTTGAATACTTTAATGAATC-GATGTTATAAAAG
65 TTCAGAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAAGTTATAAAAG
* * * * * *
5513 AACTCGTAAAAGTTTGTCAAGTTGGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCAGCT
128 AACTCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCT
* * *
5578 AAATAAGTTTTTAATTCAAAGACCAAAAGTAT-TTTATAAAATGACAACTATTTAGATCAAATGA
193 AAATAAGTTTTTAATTCAAAGACCAAAAGT-TGTTTACAAAATGACAACTATTTAGACCTAATGA
*
5642 TGCGATTTCCCGAGCATGGA
257 TGCGATTTCCCAAGCATGGA
5662 TGATACGAGT
Statistics
Matches: 4037, Mismatches: 681, Indels: 433
0.78 0.13 0.08
Matches are distributed among these distances:
402 3 0.00
403 75 0.02
404 120 0.03
405 8 0.00
406 70 0.02
407 2 0.00
408 2 0.00
409 45 0.01
410 173 0.04
411 138 0.03
412 4 0.00
413 94 0.02
414 408 0.10
415 43 0.01
416 3 0.00
417 5 0.00
418 5 0.00
419 1 0.00
420 19 0.00
421 332 0.08
422 48 0.01
423 10 0.00
424 4 0.00
425 2 0.00
426 7 0.00
427 20 0.00
428 253 0.06
429 1166 0.29
430 497 0.12
431 17 0.00
432 282 0.07
433 11 0.00
434 4 0.00
436 2 0.00
437 1 0.00
438 4 0.00
439 4 0.00
442 2 0.00
444 4 0.00
448 3 0.00
449 67 0.02
451 4 0.00
452 35 0.01
453 40 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (430 bp):
AAAAGTTGTTTACAAAATGACAACTATTTAGAACTAAATGATGAGATTTCCCAAGCATGGAATGT
TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC
TCTTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACCTAAA
TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCG
ATTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
ACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAAGAGA
GAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
Found at i:3904 original size:23 final size:23
Alignment explanation
Indices: 3877--3922 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
3867 TTCAAGGACC
*
3877 AAAAGTTGTTTGCAAAATGACAA
1 AAAAGTTGTTTACAAAATGACAA
3900 AAAAGTTGTTTACAAAATGACAA
1 AAAAGTTGTTTACAAAATGACAA
3923 CTATTTAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (23 bp):
AAAAGTTGTTTACAAAATGACAA
Found at i:4147 original size:862 final size:839
Alignment explanation
Indices: 307--5661 Score: 4012
Period size: 862 Copynumber: 6.3 Consensus size: 839
297 AAAAAAGTTA
* ** ** * * *
307 TTTT-CAAAATGACAA-CTATTTAGACCAAAAGATGAGATTTCCTAAGCTTGGAATGTTGAATAA
1 TTTTACAAAATGACAATCTATTTAGAACAAGTGATGAGATTTCCCGAGCATGGAATGTTCAAAAA
* * * * ** *
370 ATTTCTCGAAGGAATGGTTCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCCTAAA
66 ATTGCTCAAAGGAATGGATCGTCTTGAATAC-TTAAGGAACAAAAGTTATAAAAGAACTCATAAA
* ** * * * * * * * *
435 AGTTTGTCATCTTCGGATGTTCGGCCTAGAACCAAGAGAGAAACTATTCTCACATGAATAAATTT
130 AGTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAAGTTT
* * * * * * *
500 TTAATTTAAAGACAAAAAGTTGTTTACATAATGGA-AACTATTTAGACTAAATGATGCGATTT-C
195 TTAATTCAAAAACCAAAAGTTGTTTACAAAAT-GACAACTATTTAGACCAAAAGATGAGATTTCC
* ** * * * * *
563 AAGAGCATGGAATGTTCTTAAAATTGCTCGAAGGAAGGGATCGTCTTGAATATTTTAAGGAATCA
259 TA-AGCATGGAATGTT-AAAAAATTGCTCGAAGGAATGGTTC-TCTTGAATACTTTAAGGAACCG
* * * * * *
628 AAGTTAT-AAAGTAACTCGTAAAAGTTT-TCAAGTTCGAAAGTTC-GACTGAGAACCAAAAGAAA
321 AAGTTATAAAAG-AACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCT-AGAACCAAGAGAGA
* ** * * *
690 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAACTAT
384 AACTATTCTCACCTGAATAAGTTTTTAATTC-AAGACCAAAAGTTGTTTACATAATGGCAACTAT
* * * * *** *
755 TTAGACCT-AATGATGTGATCTCCCA-AGCATGGACTGTAT-GGGAAATTGCTCGAAAGAATGGA
448 TTAGA-CTAAATGATGCGAT-TTCTAGAGCATGGAATGT-TCTTAAAATTGCTCGAAGGAATGGA
* * * * * * * **
817 TCGTCCTGAATACTTTAATGAA-CAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAATTTCATA
510 TCATCTTGAATAGTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGA
* * * * * * * *
881 AATTCAACCGAGAA-CAAAGAAAGAAACAATTCTAACATAGATAACTTTTT--TT----TA-CAA
574 AGTTCGACCGAGAACCAAA-AGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
938 AA-T-G--T---CAAT-----CTATTTAGAAC-AAGTGATGCGATTTCCCGAGCATGGAATGT-T
638 AAGTAGTTTAAAAAATGACAACTATTTAGACCTAA-TGATGTGATCTCCCAAGCATGGACTGTAT
*** * ** * * *
989 CAAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACATAAGTTA-AAAAGGAA
702 -GGGAAATTGCTCA-AAAGAATGGATCGTCCAGAATACTTTAATGAA-AAAAGTTATAAAA-GAA
* * * ** * * * * * *
1052 CTCGTGAAAGTTTTTCAAGTTCGGAAGTTCGGCTGAGAACCAATAGAGAAACAATTCTCACCTAA
763 CTCGTTAAAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTCTAACATAA
*
1117 ATAAGTTGTTAATTGAAAAACCAAAAGT
828 ATAACTT-TT--TT-------------T
* * * * * * * * * *
1145 AGTTTACAGAATGACAA-CAATTTAGACCTAA-TAATGTGATTTCCCAAGCATGGACTGTACAAT
1 -TTTTACAAAATGACAATCTATTTAGAAC-AAGTGATGAGATTTCCCGAGCATGGAATGTTCAAA
* * *
1208 AAATTGCT-GAAGGAATGGATCGTCTTGAATACTTTAATGAACAAAA-TT-T---ATAACT--TG
64 AAATTGCTCAAAGGAATGGATCGTCTTGAATAC-TTAAGGAACAAAAGTTATAAAAGAACTCAT-
* ** * * * * *
1265 AAAAATTTGTAAAGTT-TAAAGTTTGGCCGAGAACGAAGAAAGAAACAATTCTCACATAAAGAAT
127 AAAAGTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAAG
* * *
1329 TTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGAT-ACGATT
192 TTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAAGATGA-GATT
* * * * *
1393 GCC-AAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATAGATCATCTTAAATACTTTAAGGAAC
256 TCCTAAGCATGGAATGTT-AAAAAATTGCTCGAAGGAATGGTTC-TCTTGAATACTTTAAGGAAC
* * * *
1457 CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCCAGAACCAAGAGAGA
319 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCTAGAACCAAGAGAGA
* * * **
1522 AATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACACAATAACAACTAT
384 AACTATTCTCACCTGAATAAGTTTTTAATTC-AAGACCAAAAGTTGTTTACATAATGGCAACTAT
** * * ** *
1587 TTAGACCGAATGATGTGATTTCTCGAGCATGG-ATGTTCGAAAAATTGCTCGAAGGAATGGATCG
448 TTAGACTAAATGATGCGATTTCTAGAGCATGGAATGTTCTTAAAATTGCTCGAAGGAATGGATCA
* * * * * ** **
1651 TCTTGATTACTTTAAGGAACCGAAGTTATAAAAGAACTCTTAAAAGTTAGTCAAGTTCAAAAGTT
513 TCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTT
** ** * *
1716 CGGTCGAGAACCATGAGAGAAATAATTCCCACCTAAATAAGTTTTTAATTCAAA-AGCCAAAAGT
578 CGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CCAAAAGT
* * * * ** *
1780 TGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTTCCAAGCATGGACTGTACAGAAA
642 AGTTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACTGTATGGGAA
* * * ** * **
1845 ATTACTCGAAGGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAGAAGAA-TATTTAA
707 ATTGCTCAAAAGAATGGATCGTCCAGAATACTTTAATGAA-AAAAGTTATAAAAGAACTCGTT-A
* *** * * * *
1909 AAGTTTGTCAAGTT-TAAAGTTTGGCTGAGAACCAAGAAAGAAACAATTCTCACATAAATAATTT
770 AAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTCTAACATAAATAA--C
1973 TTTAATTTAAAGACCAAAAGT
833 TTT--TTT------------T
* * * * ** * *
1994 TGTTTACAAAATGACAA-CTTTTTAG-TCTAAATGATAAGATTTCCTAAGCTTGGAATGTTCAGA
1 T-TTTACAAAATGACAATCTATTTAGAAC-AAGTGATGAGATTTCCCGAGCATGGAATGTTCAAA
* * * * ** *
2057 AAATTGCTCGAAGGAGTGGTTTGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTA
64 AAATTGCTCAAAGGAATGGATCGTCTTGAATAC-TTAAGGAACAAAAGTTATAAAAGAACTCATA
* * * * * * * *
2122 AAAGTTTGTCAACTTCGGAAGTTTGGCCTAGAACCAAGAGAA-AAACTATTCTCACCTAAATAAG
128 AAAGTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGA-AAGAAACAATTCTCACATAAAGAAG
* * * * * * *
2186 TTTTAAATTCAAAGACCAAAAGTTGTTTACATAATGAAAACTATTTAGACTAAATGATGCGATTT
192 TTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAAGATGAGATTT
* * ** * * * * *
2251 -CTAGAGCATGAAATTTTCTTAAAATTGCTCAAAGGAATGGATTGTCTTTAATAGTTTAAGGAAT
257 CCTA-AGCATGGAATGTT-AAAAAATTGCTCGAAGGAATGG-TTCTCTTGAATACTTTAAGGAAC
* * * * * * *
2315 C-AAGGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGAAAGTTCGACCGAGAACCAAAAGAG
319 CGAA-GTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCTAGAACCAAGAGAG
* * * * * *
2379 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTAAAAAATGACAACTC
383 AAACTATTCTCACCTGAATAAGTTTTTAATTC-AAGACCAAAAGTTGTTTACATAATGGCAA--C
* * * ** * *
2444 TATTTAGACCTAAA-GATGTGATTTCCCA-AGCATGGACTGTAT-GGAAAATTGCTTGAATGAAT
445 TATTTAGA-CTAAATGATGCGATTT-CTAGAGCATGGAATGT-TCTTAAAATTGCTCGAAGGAAT
* * * * * * *
2506 GGATCGTCTTGACTACTTTAATGAA-CAAAATTTATAAAAGAACTCGTTAAAGTTTGTCAAGATT
507 GGATCATCTTGAATAGTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAG-TT
* * * * *
2570 -GGAAGTTCAACCGAGAA-CAAAGAAAGAAACAATTGTAACATAAATAACAGTTTTT--TT----
570 CGGAAGTTCGACCGAGAACCAAA-AGAGAAACAATTCTCACCTAAAT-A-AGTTTTTAATTCAAA
* * * *
2627 -A-CAAAA-T-G-----ACAAT-----CTATTTAGAAC-AATTGATGCT-ATTTCCCGAGCATGG
632 GACCAAAAGTAGTTTAAAAAATGACAACTATTTAGACCTAA-TGATG-TGATCTCCCAAGCATGG
* ** ** * * ** * * * * *
2676 AATGT-TCGAAAAATTGCTGGAAGGAATGGATTGTCTTGAATTCTTTAAGGTACAGAAGTTAAAA
695 ACTGTAT-GGGAAATTGCTCAAAAGAATGGATCGTCCAGAATACTTTAATG-AAAAAAGTTATAA
* * ** * * *
2740 AAGAACTCATAAAAGTTTGTCAAGTTC----G-TC-T--GAGAATGAATAGAGAAACAATTCTCA
758 AAGAACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTCTAA
* *
2797 CCTAAATAAGTTTTTAATTCAAAAT
823 CATAAATAA-CTTTT--TT-----T
* * * *
2822 CGAAAAGTAGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGTGATTTCCCAAGCATGGAC
1 -------T--TTTACAAAATGACAATCTATTTAGAAC-AAGTGATGAGATTTCCCGAGCATGGAA
* * * * * *
2885 TGTACAGAAAATTACTCGATGGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAAAAG
56 TGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTGAATAC-TTAAGGAACAAAAGTTATAAAAG
* * *** * ** *
2950 AACTTATAAAAGTTTGTCAA-TTTTAAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTTACAT
120 AACTCATAAAAGTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACAT
* * * * *
3014 AAAGAATTTTTTAATTCAAAGACCAAGAGTTTTTTACAAAATGACAACTGTTTAGACCAAAAGAT
185 AAAGAAGTTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAAGAT
* * *
3079 GAGATTTCCTAAGCGTGGAATGTTCAGAAAATTGCTGGAAGGAATGGTTCGTCTTGAATACTTTA
250 GAGATTTCCTAAGCATGGAATGTT-AAAAAATTGCTCGAAGGAATGGTTC-TCTTGAATACTTTA
3144 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCTAGAACCAA
313 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCTAGAACCAA
* * * *
3209 GAGAGAAACTATTCTCACCTGGATAAGTTATTAATTTAAAGACCAAAAGTTGTTTACATAATAGC
378 GAGAGAAACTATTCTCACCTGAATAAGTTTTTAA-TTCAAGACCAAAAGTTGTTTACATAATGGC
* * * *
3274 AACAATTTAGACTAAATGTTGCGATTTCTAGAGCGTGGAATGTTCTTAAAATTGCTCGAAGGAAG
442 AACTATTTAGACTAAATGATGCGATTTCTAGAGCATGGAATGTTCTTAAAATTGCTCGAAGGAAT
*
3339 GGATCATCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAACTCATAAAAGTTTTTCAAGTTCG
507 GGATCATCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCG
* * *
3404 GAAGTTCAACCGAGAACCAAAAGAGAGACAATTCTCACCTAAATAAGTTTTTAATTAAAAGACCA
572 GAAGTTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
*
3469 AAAGTAATTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACTGTAT
637 AAAGTAGTTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACTGTAT
*
3534 GGGAAATTGCTCAGAAGAATGGATCGTCCAGAATACTTTAATGAACAAAAGTTATAAAAGAACTC
702 GGGAAATTGCTCAAAAGAATGGATCGTCCAGAATACTTTAATGAA-AAAAGTTATAAAAGAACTC
3599 GTTAAAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTCTAACATAAATA
766 GTTAAAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTCTAACATAAATA
3664 AC-TTTTTT
831 ACTTTTTTT
* * *
3672 TTTTACAAAGTGACAATGTATTTAGAACAAGTGATGCGATTTCCCGAGCATGGAATGTTCAAAAA
1 TTTTACAAAATGACAATCTATTTAGAACAAGTGATGAGATTTCCCGAGCATGGAATGTTCAAAAA
* * *
3737 ATTGCTCAAAGGAATGGATCGTCTTGAATAC-T-ATGAACAAAATTTATAAAAGAACTTATAAAA
66 ATTGCTCAAAGGAATGGATCGTCTTGAATACTTAAGGAACAAAAGTTATAAAAGAACTCATAAAA
*** * * *
3800 GTTTGTAAAGTT-TTTAGTTCGATCGAGAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTT
131 GTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAAGTTTT
3864 TAATTCAAGGACCAAAAGTTGTTTGCAAAATGACAAAAAAGTTGTTTACAAAATGACAACTATTT
196 TAATTC----A--AAAA--------C-------C--AAAAGTTGTTTACAAAATGACAACTATTT
* * * *
3929 AGACCAAAAGATGAGATTTCCTAAGCTTGCATTGTTAAATAAATTTCTCGAAGGAATGGTTCATC
238 AGACCAAAAGATGAGATTTCCTAAGCATGGAATGTTAAA-AAATTGCTCGAAGGAATGGTTC-TC
*
3994 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCATCTTCGGATGTTCG
301 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCG
4059 GCCTAGAACCAAGAGAGAAACTATTCTCACCTGAATAAGTTTTTAATTCATAGACCAAAAGTTGT
366 GCCTAGAACCAAGAGAGAAACTATTCTCACCTGAATAAGTTTTTAATTCA-AGACCAAAAGTTGT
4124 TTACATAATGGCAACTATTTAGACTAAATGATGCGATTTCTAGAGCATGGAATGTTCTTAAAATT
430 TTACATAATGGCAACTATTTAGACTAAATGATGCGATTTCTAGAGCATGGAATGTTCTTAAAATT
4189 GCTCGAAGGAATGGATCATCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGT
495 GCTCGAAGGAATGGATCATCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGT
4254 TTTTCAAGTTCGGAAGTTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTA
560 TTTTCAAGTTCGGAAGTTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTA
4319 ATTCAAAGACCAAAAGTAGTTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAG
625 ATTCAAAGACCAAAAGTAGTTTAAAAAATGACAACTATTTAGACCTAATGATGTGATCTCCCAAG
* * *
4384 CATGGACTTTATGGGAAATTGCTCAAAAGAATGGATCGTCCTGAATACTTTAATGAAAAAAGTTT
690 CATGGACTGTATGGGAAATTGCTCAAAAGAATGGATCGTCCAGAATACTTTAATGAAAAAAGTTA
* * *
4449 TAAAAGAACTCGTTAAAGTTTGTCAAGTTCGGATGTTCATCTGAGAACAAAGAAAGAAACAATTC
755 TAAAAGAACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTC
4514 TAACATAAATAACTTTTTTTT
820 TAACATAAATAAC-TTTTTTT
* *
4535 TTTTACAAAATGACATTCTATTTAGAACAAGTGATGAGATTTCCCGAGCATGGAATGTTGAAAAA
1 TTTTACAAAATGACAATCTATTTAGAACAAGTGATGAGATTTCCCGAGCATGGAATGTTCAAAAA
* * * * * *
4600 ATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAAGAGAAGTTATAGAAGAACTCGTAAA
66 ATTGCTCAAAGGAATGGATCGTCTTGAATAC-TTAAGGAACAAAAGTTATAAAAGAACTCATAAA
* * * * * * * *
4665 AGTTTGTCAAGTTCGGAAGTTCGGCCAAGAACTAGGAGAGAAATAATTCTCACCTAAATAAGTTT
130 AGTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAAGTTT
* * *
4730 TTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGAGATTTCCC
195 TTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAAGATGAGATTTCCT
* * * *
4795 AAGCATGGACT-ATACGAAAAATTGCTCGAAGGAATGGATTGC-CATGAATACTTTAAAGAA-CG
260 AAGCATGGAATGTTA--AAAAATTGCTCGAAGGAATGG-TT-CTCTTGAATACTTTAAGGAACCG
* * * ** * * * * *
4857 AAAGTTATAAAAGAACTTGTAAAAGTTAGTCAAGTT-TAAAGTTTGGCCGAGAACCAAGAAAAAA
321 -AAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCTAGAACCAAGAGAGAA
* * * * * ** *
4921 ACAATTCTCACAT-AAGGAATTTTTTAATTCAATGACCAAAAGTTGTTTACAAAATGAAAACTGT
385 ACTATTCTCACCTGAA-TAAGTTTTTAATTCAA-GACCAAAAGTTGTTTACATAATGGCAACTAT
* * * * ** *
4985 TTAGAAC-AAATGATACAATTT-TCGAAGCACGGAATGTTCAAAAAACTGCTCGAAGGAATGGAT
448 TTAG-ACTAAATGATGCGATTTCTAG-AGCATGGAATGTTCTTAAAATTGCTCGAAGGAATGGAT
* * * * *
5048 CGTCTTGAATACTTTAAGGAA-CAAAAGTTTTAAAAGAACTTGTAAAAGTTTGTCAAGTTCGGAA
511 CATCTTGAATAGTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAA
* * * * * *
5112 GCTT-GGCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAGGACCAA
575 G-TTCGACCGAGAACCAAAAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAA
* * * * * * * *
5175 AAGTTGTTTACAAAATGACAATCTATTTGGAAC-AATTTATGCGAT-TCCCCAAGCATAGAATGT
638 AAGTAGTTTAAAAAATGACAA-CTATTTAGACCTAA-TGATGTGATCT-CCCAAGCATGGACTGT
** * * * *** * **
5238 -TCGAAAAATTGCTCGAAGGAATGGATCATGTTGTATACTTT-ATGGAACCGAAGTTA-AAAAGA
700 AT-GGGAAATTGCTCAAAAGAATGGATCGTCCAGAATACTTTAAT-GAA-AAAAGTTATAAAAGA
* * * * ** * * * * * * * *
5300 ACTTGTAAAAGTTTGTCAACTTCGGAAGTT--TGGTGTGAACTAAGAGAGGATCTATTATCACAT
762 ACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCAT-CCGAGAACAAAGAAAGAAACAATTCTAACAT
**
5363 AAATATGTTTTTAATTCAAAGACCAAAAGT
826 AAATA-ACTTTT--TT-------------T
* * ** **
5393 TGTTTATAAAATGACAA-CTATTTAGACCATA-TGATGCA-ATTTCTTGAGCATGGAATGTTCGG
1 T-TTTACAAAATGACAATCTATTTAGAACA-AGTGATG-AGATTTCCCGAGCATGGAATGTTCAA
* * * *
5455 AAAATTG-TGCGAAGGAATGGATCGTCTTGAATACTTTAATGAATC-GATGTTATAAAAGAACTC
63 AAAATTGCT-CAAAGGAATGGATCGTCTTGAATAC-TTAAGGAA-CAAAAGTTATAAAAGAACTC
* * * ** * * *
5518 GTAAAAGTTTGTCAAGTTGGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCAGC-TAAAT
125 ATAAAAGTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCA-CATAAAG
* * * * *
5582 AAGTTTTTAATTCAAAGACCAAAAGTAT-TTTATAAAATGACAACTATTTAGATCAAATGATGCG
189 AAGTTTTTAATTCAAAAACCAAAAGT-TGTTTACAAAATGACAACTATTTAGACCAAAAGATGAG
**
5646 ATTTCCCGAGCATGGA
253 ATTTCCTAAGCATGGA
5662 TGATACGAGT
Statistics
Matches: 3769, Mismatches: 540, Indels: 395
0.80 0.11 0.08
Matches are distributed among these distances:
828 4 0.00
830 1 0.00
831 198 0.05
832 221 0.06
833 147 0.04
834 14 0.00
835 249 0.07
836 154 0.04
837 5 0.00
838 8 0.00
839 133 0.04
840 57 0.02
841 18 0.00
842 76 0.02
843 385 0.10
844 229 0.06
845 17 0.00
846 6 0.00
848 8 0.00
849 106 0.03
850 135 0.04
851 107 0.03
852 5 0.00
853 3 0.00
854 1 0.00
855 13 0.00
856 16 0.00
857 104 0.03
858 379 0.10
859 47 0.01
860 30 0.01
861 198 0.05
862 511 0.14
863 103 0.03
865 1 0.00
866 35 0.01
867 45 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (839 bp):
TTTTACAAAATGACAATCTATTTAGAACAAGTGATGAGATTTCCCGAGCATGGAATGTTCAAAAA
ATTGCTCAAAGGAATGGATCGTCTTGAATACTTAAGGAACAAAAGTTATAAAAGAACTCATAAAA
GTTTGTAAAGTTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAAGTTTT
TAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAAGATGAGATTTCCTA
AGCATGGAATGTTAAAAAATTGCTCGAAGGAATGGTTCTCTTGAATACTTTAAGGAACCGAAGTT
ATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGATGTTCGGCCTAGAACCAAGAGAGAAACTATT
CTCACCTGAATAAGTTTTTAATTCAAGACCAAAAGTTGTTTACATAATGGCAACTATTTAGACTA
AATGATGCGATTTCTAGAGCATGGAATGTTCTTAAAATTGCTCGAAGGAATGGATCATCTTGAAT
AGTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGACCGAG
AACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTAAAA
AATGACAACTATTTAGACCTAATGATGTGATCTCCCAAGCATGGACTGTATGGGAAATTGCTCAA
AAGAATGGATCGTCCAGAATACTTTAATGAAAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAA
GTTCGAAAGTTCATCCGAGAACAAAGAAAGAAACAATTCTAACATAAATAACTTTTTTT
Found at i:8017 original size:215 final size:215
Alignment explanation
Indices: 7468--12566 Score: 4615
Period size: 215 Copynumber: 23.9 Consensus size: 215
7458 TTTATGGAAC
* * * * *
7468 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGA-AAAAACAAATCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * * * * *
7532 ATTTTAATTTAAAGAACATAAGTTTTTTTTACAAAATGACAATTTATTTAGAACAATTGATGCGA
66 TTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGA
* * * * *
7597 TTTCCCGAA-CATGGAATGTTCGAAAAATTGCACGAAGGAATAGATTGTCTTGAATAATTTAAGG
128 TTT-CCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*
7661 AACCGAAGTTA-AAAAGAACTCGT
192 AATCGAAGTTATAAAAGAACTCGT
* * * ** *
7684 -AAAGATTTTTGATGTTC-GAAGGTTCGGTCGAGAACCAAGAGAGAAACTATTATCACCTAAA-A
1 AAAAG-TTTGTCAAGTTCGGAA-GTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATA
* * * * * * *
7746 AGTTTTTAATTCAAAAACCGAATGTTGTTTATAAAATGACAAAC-ACTTAAACCAAATGGTGCGA
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGACCAAATGATGCGA
*** * * * * * *
7810 TTTCCTAAGCACAAAATATTCAAAAAATTCCTTGAAGGAATGGATCGACTTGAATAATTTATA-G
128 TTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGG
*
7874 AATCGATGTTATAAAAGAACTCGT
192 AATCGAAGTTATAAAAGAACTCGT
* * * * *
7898 AAAATTTTGTCAACTTCGGAAGTTCGACCGTGAACCAAGAGAGAAATTATTCTCACCTAATTAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* *
7963 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
* *
8028 -CTCGAGCATGGAATGTTCGAAAAATTGC-CTGAAGGAATGGATCGTCTTAAATACTTTAAGGAA
131 CCT-AAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAA
*
8091 CCGAAGTTATAAAAGAACTCGT
194 TCGAAGTTATAAAAGAACTCGT
* * ** * *
8113 AAAAATTTGTCAAGTTCGAAAGTTCGGTCGAGAACCAAG-GAAGAAACAATTCACACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAG-AGAAACTATTCTCACCTAAATAA
* * * * * *
8177 GATTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAACTATTTAGACCAAAAGTTTCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATT
* * * *
8242 TCCCAAGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCATCTTGAATACATTATGGAA
130 TCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
**
8306 TAAAAGTT-T----G---TC--
194 TCGAAGTTATAAAAGAACTCGT
* * * * * *
8318 --AAGTTCG-AAAG-T------TTG-ACCAAGAACCAAGAAAGAAA-TAATTCTCACATAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACT-ATTCTCACCTAAATAA
* * * * * * * * *
8371 CTTTTTAATTTAAAGAACAAAA-TCTTTTTATAAAATGACAATCTATTTAGAACAATTCATGCAA
65 GTTTTTAATTCAAAGACCAAAAGT-TGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGA
* * * ** * * *
8435 TTTCCCGAA-CGTGGAAGGTTCGAGTAATTGCACGAAGGAATGGATCATCTTCG-ATACTTTATG
128 TTT-CCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTT-GAATACTTTAAG
** * * *
8498 GAGCCGAAGTTAAAAAATAACTCAT
191 GAATCGAAGTTATAAAAGAACTCGT
* * **
8523 AAAAGTTTGTCAACTTCAGAAGTTCGGTCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATT-CTCACCTAAATAA
* * * * *** *
8587 GTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATTAAATG
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATT
* * *
8652 TCCTAATCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTATGGAA-
130 TCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
*
8716 CAAAAGTT-T----G---TC--
195 C-GAAGTTATAAAAGAACTCGT
* * * * *
8728 --AAGTTCG-AAAGTT-TG-A--T----CGAGAACCAAGA-A-AAAATAATTCTCACATAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACT-ATTCTCACCTAAATAA
** * * * * * *
8780 CATTTTAATTTAAAGAACATAAGTTTTTTTACAAAATGACAATCTATTTAGAACAACTGATGCGA
65 GTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGA
* * * * *
8845 TTTTTCGAA-CATGGAATGTTTGAAAAATTGCACGAAGGAATGGATCGTCTTGAATAATTTAAGG
128 -TTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* *
8909 AA-CTGAAGTTAAAAAAGAACTTGT
192 AATC-GAAGTTATAAAAGAACTCGT
* * * * * * *
8933 AAAGGTTTTTGAAGTTTGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTATCACCTAAA-AA-
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * *
8996 TTTTTAATTCAAAGACCGAATGTTGTTTATAAAATGACAACTACTTAGACCAAATGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
* * * * * * * * *
9061 CCTAAGCACGAAATATAC-AGAAAATTGCTCGAAGGAATGGATCGACCTGAATAATTTATGGAAC
131 CCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
*
9125 CGATGTTATAAAAGAACTCGT
195 CGAAGTTATAAAAGAACTCGT
* * * * *
9146 AAAAGTTTGTCAACTTCGGAAGTTCGACTGTGAACCAATAGAGAAATTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* *
9211 TTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAACTATTTAGACCAAATGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
* * *
9276 -CTCGAGCATGGAATGTTCAAAAAATTG-TCTGAAGGAATGGATCGTCTTAAATACTTTACA-GA
131 CCT-AAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTA-AGGA
*
9338 ACCGAAGTTATAAAAGAACTCGT
193 ATCGAAGTTATAAAAGAACTCGT
* * ** * * *
9361 AAAAGTTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAGAAAGAAA-TAATTCACACCTAAGTAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACT-ATTCTCACCTAAATAA
* * * *
9425 GATTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAACTATTT-TA-CATAATGATGCAAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AATGATGCGAT
* * * * * *
9488 TTCCCAAGCATGGACTATTCGAAAAATGGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAA
129 TTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
**
9553 TAAAAGTTAT-AAAGCAACTCGT
194 TCGAAGTTATAAAAG-AACTCGT
* * * * *
9575 AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * *
9640 TTTTTAATTTAAAGACCAAAAGCTGTTTACAAAATGCCAATCTATTTAGAACAAATGATACGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATT
** * *
9705 TCCCGAGTATGGAATGTTCGAAAAATTG-TGCTG-AGGAATGGATCATCTTGAATACTTTAAGGA
130 TCCTAAGCATGGAATGTTCGAAAAATTGCT-C-GAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * *
9768 ATCAAAGTCAAAAAAGAACTCTT
193 ATCGAAGTTATAAAAGAACTCGT
* * * * * * *
9791 AAATGTTTGTCAAGTTCGAAAGTTCTG-CCGAGAACCTAGAAAGGAACTATTATCGCCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
* * *
9855 GTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTT-GAACTAAATGATACGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGCGAT
* ** * * * * **
9919 TT-TTAGAGCATGGGTTGTTCGGAAAATGGCTGGGAGGAATGGATCCCCTTGAATACTTTAAGGA
129 TTCCTA-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** *
9983 ATAAAAGTTATAAAAGAACTCAT
193 ATCGAAGTTATAAAAGAACTCGT
* * * * * * * **
10006 AAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAAAACCTAGAAAGAAA-AATTCTTACATAAA-ATT
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * *
10069 TTTTTGATTTCAAAAACCAAAAGTTGTTTACAAAATGACAATATATTTAGAACAATTGATGC-AT
66 TTTTT-AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGA-
* * * * * * * * *
10133 TTTCCTGAGAATGGAATGTTTGAAAATTTGCTAGAAGGTATAGATCTTCTTGAATAATTTAAGGA
128 TTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
10198 ACCGAAGTTAAAAAAGAACTCGT
193 ATCGAAGTTATAAAAGAACTCGT
* * * * * * *
10221 AAAGGTTTTTGAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACTATTATCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * *
10286 TTTTTAATTCAAGGACCGAATGTTGTTTATATAAAATGAAAACTATTTAGACCAAATGATGCGAT
66 TTTTTAATTCAAAGACCAAAAGTTG-TT-TACAAAATGACAACTATTTAGACCAAATGATGCGAT
** * * *
10351 TTCCTGAA-CACAGAATGTTC-AGAAAATTGCTAGAAGGAATGGATCGTCTTGAATAATTTATGG
129 TTCCT-AAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* *
10414 AACCGATGTTATAAAAGAACTCGT
192 AATCGAAGTTATAAAAGAACTCGT
* *
10438 AAAAGTTTGTCAACTTCGGAAGTTCGACC-ATGAACCAAGAGAGAAATTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGA-GAACCAAGAGAGAAACTATTCTCACCTAAATAA
* *
10502 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGA-CAAATGATACGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATT
* * * * *
10566 T-CTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGAATCGTCTTAAATTCTTTAAGGAA
130 TCCT-AAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
*
10630 CCGAAGTTATAAAAGAACTCGT
194 TCGAAGTTATAAAAGAACTCGT
* * * * * * * *
10652 AAAAGTTTGTTAAGTTTGAAAGTTCGATCAAGAACCAAGAAAGAAA-GAAT-TCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * *
10715 TTTTAAATTCAAAGACCAAAAGTAGTCTACAAAATGACAACTATTTAGA-CATAATGATGTGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AATGATGCGATT
* * * * * *
10779 TCCCAAGCATGGACTGTTCGAAAAATGGCTCGAAGGAATGGATTGTATTGAATGCTTTAAGGAAT
130 TCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
** *
10844 AAAAGTTATAAAACAACTCGT
195 CGAAGTTATAAAAGAACTCGT
** * * * * *
10865 AAAAGTTTGTCAAGTTCAAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAATTAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * *
10930 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGCCAATCTATTTAGAACAAATGATACGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATT
** * *
10995 TCCCGAGCATGGAATGTTC-AAAAACTTG-TGCGAAGGAATGAATCATCTTGAATACTTTAAGGA
130 TCCTAAGCATGGAATGTTCGAAAAA-TTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
11058 ATCGAAGTCA-ACAAAGAACTCTT
193 ATCGAAGTTATA-AAAGAACTCGT
* * * * * * *
11081 AAATGTTTGTCAAGTTCGAAAGTTCTG-CTGAGAACCTAGAGAGGACCTATTATCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
* * * *
11145 GTTTTTAATTCAAAGACCAAAATTTGTTTATAAAATGATAACTATTT-GAACCAAATGATACGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGCGAT
** * * * * * *
11209 TTCC-AGAGCATGGGTTGTTCGGAAAATGGTTGGGAGGAATGGATTGTCTTGAATACTTTAAGGA
129 TTCCTA-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** *
11273 ATAAAAGTTATAAAAGAACTCAT
193 ATCGAAGTTATAAAAGAACTCGT
* * * * * * *
11296 AAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTAGAAAGAAACAATTCTTACATAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * *
11361 CTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATGTGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATT
** * * * * * * *
11426 TCCCGAGAATGGAATGTTTGAAGAATTGCTCGAAGGTATAGATCGTCTTTAATAATTTAAGGAA-
130 TCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
* *
11490 CTGAAGTTTAAAAAAGAACGCGT
195 C-GAAG-TTATAAAAGAACTCGT
* * * * * * * *
11513 AAAGGATTT-TAAAGTT-GAAAGTTCGGCCCAAAACCTAGAGAGAAACTATTATCACCTAAATAA
1 AAAAG-TTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
* * *
11576 GTTTTTTAATTCAAAGACCAAAAGTTTTTTTTTATAAAATGACAACTATTTAGACTAAATGATGC
65 G-TTTTTAATTCAAAGACCAAAAG---TTGTTTACAAAATGACAACTATTTAGACCAAATGATGC
* * * * * *
11641 GATTTCCTGAGCTTGGAATGTTCGAAAAATTACTC----GAA-GGATCATCTTAAATACATTAAG
126 GATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
11701 GAACCGAAGTTATAAAAGAAGTCGT
191 GAATCGAAGTTATAAAAGAACTCGT
* * * * * * * *
11726 AAAAGTTAGTTAACTTTGAAAGTTC-AGCCTAGAACCGAGAGATAAACTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
* * *
11790 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAGCTATTTAGA-CATAATGATGCAAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AATGATGCGAT
* * * ** * **
11854 TTCCCAAGCATGGACTGTTCGAAAAATGGCTCGTGGGAATGGATTGTCTTGAATGTTTTAAGGAA
129 TTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
** * *
11919 TAAAAGTTATAAAACAACTTGT
194 TCGAAGTTATAAAAGAACTCGT
* * * * * * * *
11941 AAATGTTTGCCAAGTTCGGAAGTTCAACCGAGAACCAAGAAAGAAACAATTCTCACATAAACAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * * * *
12006 TGTTTAATTTAAAGACTAAAAGTTGTTTACAAAATGCCAATCTATTTAGATCAAATGATACAATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATT
** * *
12071 TCCCGAGCATGGAATGTTCGGAAAATTG-TGCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
130 TCCTAAGCATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
12135 TCGAAGTCA-ACAAAGAACTCTT
194 TCGAAGTTATA-AAAGAACTCGT
* * * * * *
12157 AAATGTTTGTCAAGTTCGAAAGTTCTG-CCGAGAACCTAGAGAGGAACTATTATCACCTAAAAAA
1 AAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
* * *
12221 GTTTTTAATTGAAAGACCAAAAGTTGTTTATAAAATGACAACTATTT-GAACCAAATGATACGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGCGAT
* * * * * * *
12285 TTCC-AGAGAATGGATTGTTCGGAAAATGGCTGGGAGAAATGGATCGTCTTGAATACTTTAAGGA
129 TTCCTA-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** *
12349 ATAAAAGTTATAAAAGAACTCAT
193 ATCGAAGTTATAAAAGAACTCGT
** * * * * *
12372 AAAAGTTTGTCAAGTTCGGAAGTTCGGTCGAGAACCTAGAAAGAAACAATTCTTACTTAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * *
12437 TTTTTAATTCAAAGACTAAAAATTGTTTACAAAATGACAATCTATTTAGAACAATTGATGCGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATT
* * * * * * * *
12502 TCCCAAGAATGGAATGTTTGAAAAATTGCTCGAAGGTATAGATCATCTTGAATAATTTAATGAAT
130 TCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
12567 AATTTAATGA
Statistics
Matches: 3966, Mismatches: 743, Indels: 348
0.78 0.15 0.07
Matches are distributed among these distances:
192 5 0.00
193 33 0.01
194 89 0.02
195 146 0.04
196 11 0.00
198 1 0.00
200 2 0.00
201 2 0.00
202 7 0.00
203 14 0.00
207 14 0.00
208 7 0.00
209 2 0.00
210 61 0.02
212 74 0.02
213 382 0.10
214 511 0.13
215 1410 0.36
216 850 0.21
217 264 0.07
218 20 0.01
219 45 0.01
220 16 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
CCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC
GAAGTTATAAAAGAACTCGT
Found at i:8883 original size:195 final size:194
Alignment explanation
Indices: 8523--8911 Score: 466
Period size: 195 Copynumber: 2.0 Consensus size: 194
8513 AATAACTCAT
* * * *
8523 AAAAGTTTGTCAACTTCAGAAGTTCGGTCGAGAACCAAGAGAGAAACTATTACCACCTAAATAAG
1 AAAAGTTTGTCAACTTCAGAAGTTCGATCGAGAACCAAGAGAGAAAATATTACCACATAAATAAC
* * * *
8588 TTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATTAAATGT
66 ATTTTAATTCAAAGAACAAATGTTCTTTACAAAATGACAACTATTTAGAACAAATGATCAAATGT
* * * *
8653 CCTAATCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTATGGAAC
131 CCGAATCATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCATCTTGAATAATTTAAGGAAC
* *
8717 AAAAGTTTGTCAAGTTC-GAAAGTTTGATCGAGAACCAAGA-A-AAAATAATT-CTCACATAAAT
1 AAAAGTTTGTCAACTTCAG-AAGTTCGATCGAGAACCAAGAGAGAAAAT-ATTAC-CACATAAAT
* * *
8778 AACATTTTAATTTAAAGAACATAA-GTTTTTTTACAAAATGACAATCTATTTAGAACAACTGATG
63 AACATTTTAATTCAAAGAACA-AATG-TTCTTTACAAAATGACAA-CTATTTAGAACAAATGAT-
* * * * * *
8842 CGATTTTTCGAA-CATGGAATGTTTGAAAAATTGCACGAAGGAATGGATCGTCTTGAATAATTTA
124 CAAATGTCCGAATCATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCATCTTGAATAATTTA
8906 AGGAAC
189 AGGAAC
8912 TGAAGTTAAA
Statistics
Matches: 165, Mismatches: 23, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
192 5 0.03
193 32 0.19
194 53 0.32
195 69 0.42
196 6 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (194 bp):
AAAAGTTTGTCAACTTCAGAAGTTCGATCGAGAACCAAGAGAGAAAATATTACCACATAAATAAC
ATTTTAATTCAAAGAACAAATGTTCTTTACAAAATGACAACTATTTAGAACAAATGATCAAATGT
CCGAATCATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCATCTTGAATAATTTAAGGAAC
Found at i:11271 original size:431 final size:427
Alignment explanation
Indices: 8717--12568 Score: 3841
Period size: 431 Copynumber: 9.0 Consensus size: 427
8707 TTTATGGAAC
* * * *
8717 AAAAGTTTGTCAAGTTCGAAAGTTTGATCGAGAACCAAGAAA-AAATAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
* * * * * *
8781 ATTTTAATTTAAAGAACATAAGTTTTTTTACAAAATGACAATCTATTTAGAACAACTGATGCGAT
66 TTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGAT
** * * * *
8846 TTTTCGAACATGGAATGTTTGAAAAATTGCACGAAGGAATGGATCGTCTTGAATAATTTAAGGAA
130 TTCCCGAGCATGGAATG-TTCAAAAATTG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * *
8911 -CTGAAGTTAAAAAAGAACTTGTAAAGGTTTTTGAAGTTTGAAAGTTCGGCCGAGAACCAAGAGA
193 TC-GAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGA
* *
8975 GAAACTATTATCACCTAAA-AA-TTTTTAATTCAAAGACCGAATGTTGTTTATAAAATGACAACT
255 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACT
* * * * * * * *
9038 ACTTAGACCAAATGATGTGATTTCCTA-AGCACGAAATATACAGAAAATTGCTCGAAGGAATGGA
320 ATTTAGACCAAATGATGCGATTTCC-AGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGGA
* * * * *** *
9102 TCGACCTGAATAATTTATGGAACCGATGTTATAAAAGAACTCGT
384 TCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
* * * * * ** * *
9146 AAAAGTTTGTCAACTTCGGAAGTTCGACTGTGAACCAATAGAGAAATTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
* * *
9211 TTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGATT
* *
9275 TCTCGAGCATGGAATGTTCAAAAAATTGTCTGAAGGAATGGATCGTCTTAAATACTTTACA-GAA
131 TCCCGAGCATGGAATGTTC-AAAAATTGTC-GAAGGAATGGATCGTCTTGAATACTTTA-AGGAA
* * * *
9339 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAGAAAG
193 TCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGAG
* * * *
9404 AAA-TAATTCA-CACCTAAGTAAGATTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAC
256 AAACT-ATT-ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAC
* * * * *
9467 TATTT-TA-CATAATGATGCAATTTCCCA-AGCATGGACTATTCGAAAAATGGCTCGAAGGAATG
319 TATTTAGACCA-AATGATGCGATTT-CCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATG
* *
9529 GATTGTCTTGAATGCTTTAAGGAATAAAAGTTAT-AAAGCAACTCGT
382 GATCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAG-AACTCGT
*
9575 AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
* * * *
9640 TTTTTAATTTAAAGACCAAAAGCTGTTTACAAAATGCCAATCTATTTAGAACAAATGATACGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGATT
* *
9705 TCCCGAGTATGGAATGTTCGAAAAATTGTGCTG-AGGAATGGATCATCTTGAATACTTTAAGGAA
131 TCCCGAGCATGGAATGTTC-AAAAATTGT-C-GAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
9769 TCAAAGTCAAAAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTGCCGAGAACCTAGAAAG
193 TCGAAGT-TAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGAG
* *
9834 GAACTATTATCGCCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTA
256 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTA
* * ** ** * *
9899 TTT-GAACTAAATGATACGATTTTTAGAGCATGGGTTGTTCGGAAAATGGCTGGGAGGAATGGAT
321 TTTAG-ACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGGAT
** *
9963 CCCCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCAT
385 CGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
* * * * **
10006 AAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAAAACCTAGAAAGAAA-AATTCTTACATAAA-ATT
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
* * * *
10069 TTTTTGATTTCAAAAACCAAAAGTTGTTTACAAAATGACAATATATTTAGAACAATTGATGC-AT
66 TTTTT-AATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGA-
* * * * * * * * *
10133 TTTCCTGAGAATGGAATGTTTGAAAATTTGCTAGAAGGTATAGATCTTCTTGAATAATTTAAGGA
129 TTTCCCGAGCATGGAATG-TTCAAAAATTG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * *
10198 ACCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGCCAAGAACCAAGAGA
192 ATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGA
* * * *
10263 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAGGACCGAATGTTGTTTATATAAAATGAAAA
255 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TT-TATAAAATGACAA
* * ** * * *
10328 CTATTTAGACCAAATGATGCGATTTCCTGAACACAGAATGTTCAGAAAATTGCTAGAAGGAATGG
318 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGG
* * *** *
10393 ATCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCGT
383 ATCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
* * ** *
10438 AAAAGTTTGTCAACTTCGGAAGTTCGACC-ATGAACCAAGAGAGAAATTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGA-GAACCAAGAAAGAAACAATTCTCACATAAATAA
* * *
10502 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAA-CTATTTAG-ACAAATGATACGAT
65 CTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGAT
* * * * *
10565 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGAATCGTCTTAAATTCTTTAAGGAA
130 TTCCCGAGCATGGAATGTTC-AAAAATTG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
10630 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTTAAGTTTGAAAGTTCGATCAAGAACCAAGAAAG
193 TCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG-CCGAGAACCAAGAGAG
* * * * * *
10695 AAA-GAAT-TCACCTAAATAAGTTTTAAATTCAAAGACCAAAAGTAGTCTACAAAATGACAACTA
256 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTA
* * *
10758 TTTAGA-CATAATGATGTGATTTCCCA-AGCATGGACTGTTCGAAAAATGGCTCGAAGGAATGGA
321 TTTAGACCA-AATGATGCGATTT-CCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGGA
* * * *
10821 TTGTATTGAATGCTTTAAGGAATAAAAGTTATAAAACAACTCGT
384 TCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
** *
10865 AAAAGTTTGTCAAGTTCAAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAATTAAC
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
* * *
10930 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGCCAATCTATTTAGAACAAATGATACGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGATT
* *
10995 TCCCGAGCATGGAATGTTCAAAAACTTGTGCGAAGGAATGAATCATCTTGAATACTTTAAGGAAT
131 TCCCGAGCATGGAATGTTCAAAAA-TTGT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
* * * * * *
11060 CGAAGTCAACAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTGCTGAGAACCTAGAGAGG
194 CGAAGTTAA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGAGA
* * *
11125 ACCTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTATAAAATGATAACTAT
257 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTAT
* ** * * * *
11190 TT-GAACCAAATGATACGATTTCCAGAGCATGGGTTGTTCGGAAAATGGTTGGGAGGAATGGATT
322 TTAG-ACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGGATC
*
11254 GTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCAT
386 GTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
* * * *
11296 AAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTAGAAAGAAACAATTCTTACATAAATAAG
1 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA-
* *
11361 C-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATGTGAT
65 CTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGAT
* * * * * * *
11425 TTCCCGAGAATGGAATGTTTGAAGAATTGCTCGAAGGTATAGATCGTCTTTAATAATTTAAGGAA
130 TTCCCGAGCATGGAATG-TTCAAAAATTG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
11490 -CTGAAGTTTAAAAAAGAACGCGTAAAGGATTT-TAAAGTT-GAAAGTTCGGCCCAAAACCTAGA
193 TC-GAAG-TT-AAAAAGAACTCGTAAAAG-TTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGA
*
11552 GAGAAACTATTATCACCTAAATAAGTTTTTTAATTCAAAGACCAAAAGTTTTTTTTTATAAAATG
253 GAGAAACTATTATCACCTAAATAAG-TTTTTAATTCAAAGACCAAAAG---TTGTTTATAAAATG
* * * * **
11617 ACAACTATTTAGACTAAATGATGCGATTTCCTGAGCTTGGAATGTTCGAAAAATTACTC----GA
314 ACAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGA
* * * *** *
11678 A-GGATCATCTTAAATACATTAAGGAACCGAAGTTATAAAAGAAGTCGT
379 ATGGATCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
* * * * * * * * * * *
11726 AAAAGTTAGTTAACTTTGAAAGTTC-AGCCTAGAACCGAGAGATAAACTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA
* * * *
11790 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTAC-AGCTATTTAG-ACATAATGATGCAA
65 CTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACA-AATGATGCGA
* * * ** * **
11853 TTTCCCAAGCATGGACTGTTCGAAAAATGGCTCGTGGGAATGGATTGTCTTGAATGTTTTAAGGA
129 TTTCCCGAGCATGGAATGTTC-AAAAATTG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * * * * *
11918 ATAAAAGTTATAAAACAACTTGTAAATGTTTGCCAAGTTCGGAAGTTCAACCGAGAACCAAGAAA
192 ATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGA
* * * * * * * * * *
11983 GAAACAATTCTCACATAAACAACTGTTTAATTTAAAGACTAAAAGTTGTTTACAAAATGCCAATC
255 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAA-C
* * * * *
12048 TATTTAGATCAAATGATACAATTTCCCGAGCATGGAATGTTCGGAAAATTG-TGCGAAGGAATGG
319 TATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGGAAAATGGCT-CGAAGGAATGG
* ** * *
12112 ATCATCTTGAATACTTTAAGGAATCGAAGTCA-ACAAAGAACTCTT
383 ATCGTCTTGAATACTTTAAGGAATAAAAGTTATA-AAAGAACTCGT
* * * * * * * * *
12157 AAATGTTTGTCAAGTTCGAAAGTTCTG-CCGAGAACCTAGAGAGGAACTATTATCACCTAAAAAA
1 AAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA
* * * *
12221 GTTTTTAATTGAAAGACCAAAAGTTGTTTATAAAATGACAA-CTATTT-GAACCAAATGATACGA
65 CTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAA-CAAATGATGCGA
* * * * * * * *
12284 TTTCCAGAGAATGGATTGTTCGGAAAATGGCTGGGAGAAATGGATCGTCTTGAATACTTTAAGGA
129 TTTCCCGAGCATGGAATGTTC-AAAAATTG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * * *
12349 ATAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGGTCGAGAACCTAGAAA
192 ATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GCCGAGAACCAAGAGA
* * * * * * *
12414 GAAACAATTCTTACTTAAATAAGTTTTTAATTCAAAGACTAAAAATTGTTTACAAAATGACAATC
255 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAA-C
* * * * * * * *
12479 TATTTAGAACAATTGATGCGATTTCCCA-AGAATGGAATGTTTGAAAAATTGCTCGAAGGTATAG
319 TATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGG
* * *
12543 ATCATCTTGAATAATTTAATGAATAA
383 ATCGTCTTGAATACTTTAAGGAATAA
12569 TTTAATGATA
Statistics
Matches: 2856, Mismatches: 479, Indels: 174
0.81 0.14 0.05
Matches are distributed among these distances:
425 16 0.01
426 47 0.02
427 195 0.07
428 209 0.07
429 483 0.17
430 614 0.21
431 972 0.34
432 206 0.07
433 49 0.02
434 6 0.00
435 58 0.02
436 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (427 bp):
AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCGATT
TCCCGAGCATGGAATGTTCAAAAATTGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCG
AAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGCCGAGAACCAAGAGAGAAACT
ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG
ACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGGAAAATGGCTCGAAGGAATGGATCGTCTT
GAATACTTTAAGGAATAAAAGTTATAAAAGAACTCGT
Found at i:11533 original size:860 final size:856
Alignment explanation
Indices: 7194--29188 Score: 10826
Period size: 839 Copynumber: 25.6 Consensus size: 856
7184 GTTTCGTATC
* * * ** **
7194 AATGGAATATTCTG-AAAATTGCTCAAAGAAATCTATCGTCTTGAATACTTTAAGGAACAAAAGT
1 AATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * ** * * *
7258 TATATAAAAGAACTAGTAGAAGTTTGTTAAGTTCG-AATTTCAACCGAGAACCAAGAACGAAACA
65 TA-A-AAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-T
* * * * * * * *
7322 ATTCTAACATAAAGAATTTTTTAATTCAAA-ACCAAAATTTGTTTACAAAATGACAAATATTTAG
126 ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG
* * * * *
7386 ACCA-AATGATTCGATTTCCCAAGCATGGAATAGTTCGAAAAATTGTTCGAAGGAATGGATCATC
191 A-CATAATGATGCGATTTCCTAAGCATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCGTA
*
7450 TTGAATACTTTATGGAACAAAAGTT-T----G---TC----AAG--T-TC--G---G-AAGTTCG
254 TTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG
* * * *
7494 ACCGAGAACCAAGAAA-AAACAAATCTCACATAAATAACATTTTAATTTAAAGAACATAAGTTTT
319 ACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAG--TT
* * * * *
7558 TTTTACAAAATGACAATTTATTTAGAACAATTGATGCGATTTCCCGAACATGGAATGTTCGAAAA
382 GTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAA
* * ** *
7623 ATTGCACGAAGGAATAGATTGTCTTGAATAATTTAAGGAACCGAAGTTAAAAAGAACTCGT-AAA
446 ATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAAAAAGAACTCGTAAAA
* * * * *
7687 GATTTTTGATGTTCGAAGGTTCGGTCGAGAACCAAGAGAGAAACTATTATCACCTAAA-AAGTTT
510 G-TTTGTCAAGTTCGAAAGTTCGCT-GAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTT
* * * * * * *
7751 TTAATTCAAAAACC-GAATGTTGTTTATAAAATGACAAAC-ACTTAAACCAAATGGTGCGATTTC
573 TTAATTCAAAGACCAAAAT-TTGTTTATAAAATGAC-AACTATTTAGACCAAATGATACAATTTC
*** * ** * * * *
7814 CTA-AGCACAAAATATTCAAAAAATTCCTTGAAGGAATGGATCGACTTGAATAATTTATA-GAAT
636 C-AGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAAT
** * * * * *
7877 CGATGTTATAAAAGAACTCGTAAAATTTTGTCAACTTCGGAAGTTCGACCGTGAACCAAGAGAGA
699 AAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGA
** * * * *
7942 AATTATTCTCACCTAATTAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-ATA
764 AACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTA
* ** *
8006 TTTAGACCAAATGATGTGATTTCTCGAG
829 TTTAGAACAAATGATACGATTTCCCGAG
* * *
8034 CATGGAATGTTCGAAAAATTGC-CTGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGT
1 AATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * * *
8098 TATAAAAGAACTCGTAAAAATTTGTCAAGTTCGAAAGTTCGGTCGAGAACCAAGGAAGAAACAAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * *
8163 TCA-CACCTAAATAAGATTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAACTATTTAGA
128 T-ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA
* * * *
8227 CCA-AAAGTTTCGATTTCCCAAGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATC----
192 -CATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTAT
* * * *
8286 ---AT-C-TT---GAA-TACA-TTAT---GGAA----TAAAAGTTTGTCAAGTTCGAAAGTTTGA
255 TGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA
* * * *
8334 CCAAGAACCAAGAAAGAAATAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAA-TCTTT
320 CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGT-TGT
* * * * * * **
8398 TTATAAAATGACAATCTATTTAGAACAATTCATGCAATTTCCCGAACGTGGAAGGTTCGAGTAAT
384 TTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAAT
* * * * *
8463 TGCACGAAGGAATGGATCATCTTCG-ATACTTTATGGAGCCGAAGTTAAAAAATAACTCATAAAA
448 TG-TCGAAGGAATGGATCATCTT-GAATACTTTAAGGAACCGAAGTT-AAAAAGAACTCGTAAAA
* * *
8527 GTTTGTCAACTTC-AGAAGTTCGGTCGAGAACCAAGAGAGAAACTATTACCACCTAAATAAGTTT
510 GTTTGTCAAGTTCGA-AAGTTCGCT-GAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTT
* * *
8591 TTAATTCAAAGAAC-AAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATTA-AATGTC
573 TTAATTCAAAGACCAAAAT-TTGTTTATAAAATGACAACTATTTAGACCAAATGA-TACAATTTC
* * *
8654 CTA-ATCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTT-----AT-
636 C-AGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATA
* * *
8712 ---G--------GAA--C--AAAAGTTTGTCAAGTTCGAAAGTTTGATCGAGAACCAAGAAA-AA
700 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAA
* * * * *
8761 ATAATTCTCACATAAATAA-CATTTTAATTTAAAGAACATAAGTTTTTTTACAAAATGACAATCT
765 ACAATTCTCACATAAATAAGC-TTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAATCT
* * **
8825 ATTTAGAACAACTGATGCGATTTTTCGA-
828 ATTTAGAACAAATGATACGATTTCCCGAG
* * *
8853 ACATGGAATGTTTGAAAAATTGCACGAAGGAATGGATCGTCTTGAATAATTTAAGGAACTGAAGT
1 A-ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * * *
8918 TAAAAAAGAACTTGTAAAGGTTTTTGAAGTTTGAAAGTTCGGCCGAGAACCAAGAGAGAAACTAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAG-TTGAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * *
8983 TATCACCTAAA-AA-TTTTTAATTCAAAGACCGAATGTTGTTTATAAAATGACAACTACTTAGAC
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-
* * * * * *
9046 CA-AATGATGTGATTTCCTAAGCACGAAATATAC-AGAAAATTGCTCGAAGGAATGGATCG-ACC
192 CATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTA-T
* * ** * * *
9108 TGAATAATTTATGGAACCGATGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGA
255 TGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA
* * * * ** * * * *
9173 CTGTGAACCAATAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATT
320 CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTT
* ** *
9238 TACAAAATGACAA-CTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATT
385 TACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAATT
* *
9302 GTCTGAAGGAATGGATCGTCTTAAATACTTTACA-GAACCGAAGTTATAAAAGAACTCGTAAAAG
449 GTC-GAAGGAATGGATCATCTTGAATACTTTA-AGGAACCGAAGTTA-AAAAGAACTCGTAAAAG
* * * * *
9366 TTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAGAAAGAAA-TAATTCA-CACCTAAGTAAGATT
511 TTTGTCAAGTTCGAAAGTTCGCT-GAGAACCAAGAGAGAAACT-ATT-ATCACCTAAATAAGTTT
* * * * *
9429 TTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAACTATTT-TA-CATAATGATGCAATTTCC
573 TTAATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCA-AATGATACAATTT-C
* * * * * *
9492 CA-AGCATGGACTATTCGAAAAATGGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAATAA
636 CAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAA
*
9556 AAGTTAT-AAAGCAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAAAGAA
701 AAGTTATAAAAG-AACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAA
* * *
9620 ACAATTCTCACATAAATAA-CTTTTTAATTTAAAGACCAAAAGCTGTTTACAAAATGCCAATCTA
765 ACAATTCTCACATAAATAAGC-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTA
9684 TTTAGAACAAATGATACGATTTCCCGAG
829 TTTAGAACAAATGATACGATTTCCCGAG
* * *
9712 TATGGAATGTTCGAAAAATTG-TGCTG-AGGAATGGATCATCTTGAATACTTTAAGGAA-TCAAA
1 AATGGAATGTTCGAAAAATTGCT-C-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAA
* * * * *
9774 GTCAAAAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTGCCGAGAACCTAGAAAGGAACT
63 GTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAA-GAAAT
*
9839 ATTATCGCCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTT-G
126 ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG
* * ** * * * * **
9903 A-ACTAAATGATACGATTT-TTAGAGCATGGGTTGTTCGGAAAATGGCTGGGAGGAATGGATCCC
191 ACA-T-AATGATGCGATTTCCTA-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* * * *
9966 CTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTC
253 ATTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
* * * * ** * *
10031 GGCCGAAAACCTAGAAAGAAA-AATTCTTACATAAA-ATTTTTTTGATTTCAAAAACCAAAAGTT
318 GACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTT-AAAGACCAAAAGTT
* * * * * *
10094 GTTTACAAAATGACAATATATTTAGAACAATTGATGCATTTTCCTGAGAATGGAATGTTTGAAAA
382 GTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATG-TTCAAAA
* * * * * *
10159 TTTGCTAGAAGGTATAGATCTTCTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAA
446 ATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTT-AAAAAGAACTCGTAAA
* * * **
10224 GGTTTTTGAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTT
509 AGTTTGTCAAGTTCGAAAGTTC-GCTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTT
* * * * *
10289 TTAATTCAAGGACC-GAATGTTGTTTATATAAAATGAAAACTATTTAGACCAAATGATGCGATTT
573 TTAATTCAAAGACCAAAAT-TTG-TT-TATAAAATGACAACTATTTAGACCAAATGATACAATTT
* * ** * * * * **
10353 CCTGAACACAGAATGTTCAGAAAATTGCTAGAAGGAATGGATCGTCTTGAATAATTTATGGAACC
635 CCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATA
* * * *
10418 GATGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGACC-ATGAACCAAGAGAGA
700 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGA-GAACCAAGAAAGA
** * * *
10482 AATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAA-CTA
764 AACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTA
*
10546 TTTAG-ACAAATGATACGATTTCTCGAG
829 TTTAGAACAAATGATACGATTTCCCGAG
* * * * * *
10573 CATGGAATGTTCGAAAAATTGCTTGAAGGAATGAATCGTCTTAAATTCTTTAAGGAACCGAAGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * ** * * * *
10638 ATAAAAGAACTCGTAAAAGTTTGTTAAGTTTGAAAGTTCGATCAAGAACCAAGAAAGAAAGAAT-
66 AAAAAAGAACTCGTAAAAGTTTGTCAAG-TTGAAAGTTCGGCCGAGAACCTAGAAAGAAATATTA
* * * *
10702 TCACCTAAATAAGTTTTAAATTCAAAGACCAAAAGTAGTCTACAAAATGACAACTATTTAGACAT
130 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACAT
* * * * *
10767 AATGATGTGATTTCCCAAGCATGGACTGTTCGAAAAATGGCTCGAAGGAATGGATTGTATTGAAT
195 AATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATTGAAT
* * * *
10832 GCTTTAAGGAATAAAAGTTATAAAACAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGACCGAG
260 ACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAG
*
10897 AACCAAGAAAGAAACAATTCTCACATAATTAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAA
325 AACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAA
* * *
10962 AATGCCAATCTATTTAGAACAAATGATACGATTTCCCGAGCATGGAATGTTCAAAAACTTGTGCG
390 AATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAA-TTGT-CG
* * * * *
11027 AAGGAATGAATCATCTTGAATACTTTAAGGAATCGAAGTCAACAAAGAACTCTTAAATGTTTGTC
453 AAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAA-AAAGAACTCGTAAAAGTTTGTC
* * *
11092 AAGTTCGAAAGTTCTGCTGAGAACCTAGAGAGGACCTATTATCACCTAAATAAGTTTTTAATTCA
517 AAGTTCGAAAGTTC-GCTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAATTCA
* *
11157 AAGACCAAAATTTGTTTATAAAATGATAACTATTT-GAACCAAATGATACGATTTCCAGAGCATG
581 AAGACCAAAATTTGTTTATAAAATGACAACTATTTAG-ACCAAATGATACAATTTCCAGAGCATG
** * * * * *
11221 GGTTGTTCGGAAAATGGTTGGGAGGAATGGATTGTCTTGAATACTTTAAGGAATAAAAGTTATAA
645 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTTATAA
* * * * *
11286 AAGAACTCATAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTAGAAAGAAACAATTCTTA
710 AAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA
*
11351 CATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAT
775 CATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAA
**
11416 TGATGTGATTTCCCGAG
840 TGATACGATTTCCCGAG
* * * * * *
11433 AATGGAATGTTTGAAGAATTGCTCGAAGGTATAGATCGTCTTTAATAATTTAAGGAACTGAAGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAG-T
* * * * * *
11498 TAAAAAAGAACGCGTAAAGGATTT-TAAAGTTGAAAGTTCGGCCCAAAACCTAGAGAGAAACTAT
65 TAAAAAAGAACTCGTAAAAG-TTTGTCAAGTTGAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
*
11562 TATCACCTAAATAAGTTTTTTAATTCAAAGACCAAAAGTTTTTTTTTATAAAATGACAACTATTT
128 TATCACCTAAATAAG-TTTTTAATTCAAAGACCAAAAG---TTGTTTATAAAATGACAACTATTT
* * * *
11627 AGAC-TAAATGATGCGATTTCCTGAGCTTGGAATGTTCGAAAAATTACTCGAAGG-AT-CATC--
189 AGACAT-AATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* * ** * * * * *
11687 -TTAAATACATTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAGTTAGTTAACTTTGAAAGTTC
253 ATTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
* * * * * * * *
11751 -AGCCTAGAACCGAGAGATAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
318 GA-CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTT
* * * *
11815 GTTTACAAAATTAC-AGCTATTTAG-ACATAATGATGCAATTTCCCAAGCATGGACTGTTCGAAA
382 GTTTACAAAATGACAATCTATTTAGAACA-AATGATGCAATTTCCCGAGCATGGAATGTTC-AAA
* ** ** ** *** * *
11878 AATGGCTCGTGGGAATGGATTGTCTTGAATGTTTTAAGGAATAAAAGTTATAAAACAACTTGTAA
445 AATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAA
* * * * * * * * * * * *
11943 ATGTTTGCCAAGTTCGGAAGTTCAACCGAGAACCAAGAAAGAAACAATTCTCACATAAACAACTG
508 AAGTTTGTCAAGTTCGAAAGTTC-GCTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTT
* * * * * *
12008 TTTAATTTAAAGACTAAAAGTTGTTTACAAAATGCCAATCTATTTAGATCAAATGATACAATTTC
572 TTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAA-CTATTTAGACCAAATGATACAATTTC
* * *
12073 CCGAGCATGGAATGTTCGGAAAATTG-TGCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC
636 CAGAGCATGGAATGTTCGGAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATA
* * * * * * *
12137 GAAGTCA-ACAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTG-CCGAGAACCTAGAGAG
700 AAAGTTATA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAGAAAG
* * * * * * * *
12200 GAACTATTATCACCTAAAAAAGTTTTTAATTGAAAGACCAAAAGTTGTTTATAAAATGACAA-CT
763 AAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCT
*
12264 ATTT-GAACCAAATGATACGATTTCCAGAG
828 ATTTAGAA-CAAATGATACGATTTCCCGAG
* * * * * * *
12293 AATGGATTGTTCGGAAAATGGCTGGGAGAAATGGATCGTCTTGAATACTTTAAGGAA-TAAAAGT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGT
* * * * *
12357 TATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGGTCGAGAACCTAGAAAGAAACAAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * * * *
12422 TCTTACTTAAATAAGTTTTTAATTCAAAGACTAAAAATTGTTTACAAAATGACAATCTATTTAGA
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAA-CTATTTAG-
* * * * * * * *
12487 ACA-ATTGATGCGATTTCCCAAGAATGGAATGTTTGAAAAATTGCTCGAAGGTATAGATCATCTT
191 ACATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATT
* * * * *** * * *
12551 GAATAATTTAATG-A-ATAA-TT-T-AATG-A-TACGGCCACG---GTCCGAGACTC-ACCAAGT
256 GAATACTTTAAGGAACAAAAGTTATAAAAGAACT-CGTAAAAGTTTGT-CAAG-TTCGA--AAGT
* * * * ** * *** ** *** * ** ** **
12605 GCTAACAAGGAACCTTTG-GAGCTGCCCTTAGGACCT--ATAAC---TCGAGCTCGAG-CC-AAA
316 TCGACCGA-GAACC-AAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAA
* * * * * ** * *
12662 --CGTTT-CAAGGA-GGC--TGT-TTCAGCTCTAAT--TG--A--T--CGAGCGTGG-A-G---A
379 GTTGTTTACAA-AATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTCA
* * * * * * * ** * ** * *** ** *
12707 GAAACTGTGCG-GGGCTTATCGATCAATCTTGGACAAGTCAACTAATTCGGCCTT--GCA-ACCT
443 AAAATTGT-CGAAGG--AATGGATC-ATCTTGAATACTTTAAGGAA-CCGAAGTTAAAAAGAACT
* * ** * * **** * * *** * * *
12768 CCTACAAGTTCATCTAGCTC-ATTCATAGCTCATTGAACTCAACTTCAG---CTCATTTTTAACT
503 CGTAAAAGTTTGTCAAGTTCGAAAGTTCGCTGA--GAAC-CAA-GAGAGAAACT-A-TTATCACC
* * * ** * * ** ** **
12829 TAGCATTA-TTTTGCTGGAA-T-AAATA-TTAAATTTATTT-TAGTTAAT-TTAGTTATTTAGTT
562 TA-AATAAGTTTT--T--AATTCAAAGACCAAAATTTGTTTATA--AAATGACAACTATTTAGAC
* * * * * * *** ** * **
12888 TAAGTTATTA-AATGTGT-CATAATC-TGGACATTTTTATTAAATAGGGTTTTAATGTGTCTTAG
620 CAAATGA-TACAAT-T-TCCA-GAGCATGGA-A-TGTTCGGAAA-ATTGCTCGAA-G-G----A-
* * * * * * * ** ** * * *
12950 TTTGATACTTATTTAATAGTTGTTTTTAATGTGTCTAAGTTTGAGACAAATTAATTTCATGTTTG
671 ATGGAT-CGTCTTGAATA-----CTTTAAGGAATAAAAG-TT-ATA-AAA-GAA-CTC--G--T-
* * * * *** * * * * * ***
13015 AATTAA-TATGTCCTAGCTGAT-AGTAGTTAGCTGATTAATATATTTCAGGTACATGTATGGATG
720 AA--AAGTTTGT-CAAG-T--TCGGAAGTT--C-GACCGAGA-A--CCAAG-A-AAGAAACAAT-
* * ** * * * * * * ** * ** * *
13078 GCTTGA-ATATGGTATGCTGTTGATTGAAATGCTCCAAGCACCT-CTT-CATGTATGCCAAGAGC
770 TC-TCACATA-AATAAGCTTTTAATTCAAA-G-ACCAA-AAGTTGTTTACA-AAATGAC-A-ATC
* * *** ** * **
13140 CA-TT-GAGCTGCTGATTTGTCTTTCCAAAG
827 TATTTAGAACAAATGATACG-ATTTCCCGAG
* * * *** * * * * *
13169 -CTGTCCATTTAGTT-GCTTAAGTGCTTTC-ACATTTG-TTGGA-GGTTCCTTTCGCACTCATGG
1 AATG--GA-AT-GTTCGAAAAATTGC--TCGA-A--GGAATGGATCG-T-C-TT-G-A---AT-A
* * ** * ** * ** ** ** *
13229 CTGTTCAA--ATTCGTG-TGTTCACACTCCAAG-GCT-GTTGAAGTGTCCCAAACTGCCATTTAA
48 CT-TT-AAGGA-AC-TGAAGTT-A-A--AAAAGAACTCGTAAAAGTTTGTCAAGTTGAAAGTT--
* * ** * ** * * * ** * ** * **
13289 AGTCC-A-AACTCTCCAAATATTCAA-GGTAGCCCCTTAA-AAGCCTTTCAAACCTC-TTGGCTG
103 CGGCCGAGAAC-CTAGAAAGA---AATATTATCACCTAAATAAG--TTTTTAA-TTCAAAGACCA
** * ** ** * * * * **
13349 AATCTAGCCTAGT-CCAT-TCAGCT-TCTT--ACTTAAT--TTC-ATTTAATTTAAGCAGATTGG
161 AAAGTTGTTTA-TAAAATGACAACTAT-TTAGACATAATGATGCGATTT--CCTAAGC--A-TGG
*** * * * * * ** * *
13406 AAACATC-AAGGGACTTG-TCTAATGGCAT-CA-CCAATGCTAGAGA-AGGTTCAAGGAAGTTTC
219 AATGTTCGAA--AAATTGCTCGAA-GGAATGGATCGTAT--T-GA-ATA-CTTTAAGGAA----C
* * * ** * * ** **** ** * *** *
13466 -CAACTCCATTAAGCTGAACGCATGCTACCCAT-TC-AGTTCCCTAAGTGTCTATTAAGCTAGCC
272 AAAAGT-TA-TAA-AAGAACTCGT-AAAAGTTTGTCAAGTT-CGAAAGT-TCGACCGAG--AACC
* * * * * * * * * * * *
13528 ATGTAATTG-AGC---TAT-A-A-ATATGAAGCTCTTTAGTTTTATG-GCAGATGTT-TTGATAC
329 AAG-AA-AGAAACAATTCTCACATAAAT-AA-CTTTTTAATTTAAAGACCAAAAGTTGTT--TAC
*** * * ** ** * * * * * * * ** *
13584 TTTGATGA-ATTTTGATATCTTAG-TGAGTTTATTCAA-CTCTCAATTTTCGTTTAA-GACTCAA
388 -AAAATGACA--AT-CTAT-TTAGAACAAATGATGCAATTTCCCGA---GCATGGAATG-TTCAA
* * * * * * *** * ** *
13645 GTTGACTTATCG-AGCTTGCAAGTGGCGTCATCCTTG-TTTCTTTGAACTTATC-ACTCTTAAAC
444 ---AAATTGTCGAAG---G-AA-TGG-ATCAT-CTTGAATACTTT-AAGGAACCGA-AGTTAAAA
* ** ** ** * *** *
13707 TGAGTGTGGCGTTCACCTTTGAT-ACA-TTTG---GTTC-CT-ATCTCTTCATAGGTAGTGGGTC
497 AGA-ACT--CGTAAAAGTTTG-TCA-AGTTCGAAAGTTCGCTGAGAAC--CA-A-G-A--GAG--
* * * **
13765 AAGGTCCTTTCTATCACCCTTCCATCACCTTAAGTGTCTTATAAGTCTCGGGTCAATACTCCTTC
548 AA---ACTAT-TATCA-CC-T--A--A--ATAAGT-T-TT-TAA---T----TCAA-A-GAC--C
* * * *** ** * * * *
13830 ATAGTATTGGTTCAT-TCTTGACCTTAAGCTTACTTATCCACTATAACT-TTCCACCTTTGCCTT
587 A-A-AATTTGTTTATAAAATGA-C--AA-C-TA-TT-TAGACCA-AA-TGATACA-ATTT-CC--
*** *** * * * * * *** *
13893 ACTTCATTTCAT-TCCGAGCCAAACTACATCCATACTTA-GCCGAAT--TCCTTGAA-AC-TCAA
637 AGAGCATGGAATGTTCG-G-AAAATTGC-TCGA-AGGAATG--G-ATCGT-CTTGAATACTTTAA
* ** * ** **
13952 GCTCAGAATGATACTTCTCCATTTAATGATAGGGCACAACTACGACTCAAATACTTTCACAAACT
694 G----GAAT-AAAAGT-T--A--TAA--A-A--G---AACT-CG--T-AAA-AGTTTGTCAAGTT
* * * * * * * ** * * *
14017 C-G-AGATCATATC-ATTTAACGAATAGAAGTTAAAAAAGAACT--CGT-AA-AGGTTTTTGAAG
736 CGGAAGTTC-GACCGA--GAACCAAGA-AAG--AAACAA-TTCTCACATAAATAAGCTTTT-AA-
** * *** * * * * * * *** *
14075 TTCGAAAGTTC---GGTTGAGAACCAAGA-GAGAAACTA-TTATTACCTAAATAAGTTTTTAATT
792 TTC-AAAGACCAAAAGTTGTTTA-CAAAATGACAATCTATTTA-GAAC-AAAT--GATACGATTT
**
14135 -CAAAG
851 CCCGAG
* * ** * * * * * * * * *
14140 -ATAGAATGTT-GTTTATAAAA-TG-AC-AACTATTTAGACCAAATGATGTGATTTC-TTGA-GC
1 AATGGAATGTTCG---A-AAAATTGCTCGAAGGA-ATGGATC--GT-CT-TGAATACTTTAAGGA
* * *** * * *
14198 ACGGAATGTTCAGAAAATTGCTCAAAGGAATGGATCGTCTTGAAT-AATTTATGGAACCGATGTT
57 ACTGAA-GTT-AAAAAAGAACTC---GTAA---A-AGT-TTG--TCAA-GT-T-GAA---A-GTT
***** *** * ***
14262 -ATAAAAGAACTCGTA-AAAGTTTGTCAACTTCGGAAGTTCAACCGTGAACCAAGAGAGAAATT-
103 CGGCCGAGAAC-C-TAGAAAG-AAAT--A-TT----A--TC-ACC-T--A--AATA-AGTTTTTA
** * * ** * ** *
14324 ATTC--TCACCTAAATAAGTT-TTTAATTCAAA-GACCAA-AAGTTGTTTACAAAATGACAACTA
149 ATTCAAAGACC--AA-AAGTTGTTT-A-TAAAATGA-CAACTA-TT-TAGACATAATGA-TGCGA
* * * * *
14384 TTTAGACCAAATG-ATGTG-ATTTCTCGAGCATGCAATGTTCGAAAAATTGCTTGAAGGAATGGA
205 TTT---CCTAA-GCATG-GAATGT-TCGA--A--AAAT-TGC-T-------C--GAAGGAATGGA
* * * * *
14447 TCGTCTTAAATACTTTACGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAA
249 TCGTATTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAA
** * * * * *
14512 GTTCGGTCGAGAACCAAGAAAGAAACAATTCACACCTAAATAAGTTTTTAATTCAAAGATCAAAA
314 GTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAA
* * * *
14577 GTGGTTTACAAAATGACAA-CTATTTAG-CCATAATGATGCAATTTCCCAAGCATGG-ACGTTCG
379 GTTGTTTACAAAATGACAATCTATTTAGAACA-AATGATGCAATTTCCCGAGCATGGAATGTTC-
* * ** * * *** * * *
14639 GAAAATGGCTCGAAGGAATGGATTGTATTGAATGCTTTAAGGAATAAAAGATATTAAACAACTCG
442 AAAAATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCG
* * * * * * *
14704 TAAAAATTTGTCAAGTTCAAAAGTTCGACCGAAAACCAAGA-AGAAACAATTCTCACATAAATAA
505 TAAAAGTTTGTCAAGTTCGAAAGTTCG-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAA
* * * * * * * *
14768 CTTTTTAATTTAAAGACAAAAAGTTGATTACAAAATGCCAATCTATTTAGAACAAATGATA-AGA
569 GTTTTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAA-CTATTTAGACCAAATGATACA-A
** * * * *
14832 TTTCCCTAGCATGGAATGTTTGGAAAAATGAGT-GAAGGAATGGATCATCTTGAATACTTTAAGG
632 TTTCCAGAGCATGGAATGTTCGGAAAATTG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** * * * * * *
14896 AATCGAAGTCA-ACAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTG-TCGAGAACCTAG
696 AATAAAAGTTATA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAG
* ** * * * * * * *
14959 AGAGGTACTATTATCACCTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTATAATATGACA
759 AAAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
**
15024 A-CTATTT-GAAGCAAATGATACGATTTCCAAAG
824 ATCTATTTAGAA-CAAATGATACGATTTCCCGAG
* * * * * * * * * *
15056 CATAGATTGTTTGGAAAATGGCTGGGAGGAATGGATCGTCTTGAATACTTTAA-GAAATAAAAGT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGT
* * * * * * * *
15120 TATAAAATAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCAGCCGAGAACCTTGAACGAAACAAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * * * *
15185 TCTTACATAAATAAGCTTTTAATTCAAAGACCAAAAGTCGTTTACAAAATGACAATCTATTTAGA
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAA-CTATTTAG-
* ** * * * * *
15250 ACA-ATTGATGCGATTTCCCGAGAATGGAATGTTTGAAAAATTGCTCGAAGGTATAGATCGTCTT
191 ACATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATT
* * * * *
15314 GAATAATTTAAGGAACCGAAA-TTA-AAGAAGAACTCGTAAATGTTTTTTAAGTTCGAAAGTTC-
256 GAATACTTTAAGGAA-CAAAAGTTATAA-AAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG
* * * * * * * *
15376 AGCTC-AGAACCTAGAGAGAAACTATTATCACCTTAATAAGTTTTTTAATTCAAAGACCAAAAGT
319 A-C-CGAGAACCAAGAAAGAAACAATTCTCACATAAATAA-CTTTTTAATTTAAAGACCAAAAG-
* * * * * ** * *
15440 TTTTTTATAAAATGATAA-CTATTTAGACCAAATGATTCAATTTCCTAAGCTTGGAGTGTTCAGA
380 TTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTCA-A
* * * *
15504 AAATTGCTC----GAA-GGATCTTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAAGTCGTA
444 AAATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTA
* * * * * *
15564 AAAGTTTGTTAACTTTGAAAGTTCAGCCT-AGAACCAAAAGAGAAACTATTCTCACCTAAATATG
507 AAAGTTTGTCAAGTTCGAAAGTTC-G-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAG
* * * * * *
15628 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAACTATTTAGACCAAATTATGCGATTT
570 TTTTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTT
* **
15693 CTC-GTGCATGGAATGTTCGGAAAATTGCTTAAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
635 C-CAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
** * * * * *
15757 CGAAGTTATGAAAGAACTCATAAAAGTTTTTCAGGTTCGTAAGTTCGACCGAGAACCAA-AAGAG
699 AAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAA-AG
* * * * *
15821 AAACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTAAAAAATGACAA-C
763 AAACAATTCTCACATAAATAAGCTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAATC
* * ** * *
15884 TATTTAGACCTAATGATGTGATTTTCCAAG
827 TATTTAGAACAAATGATACGATTTCCCGAG
* * *
15914 CATGGACTGTAC-AGAAAATTGCTCGAAGGAATGG-TC--CTTGAATACTTTAAGGAA-TCGAAG
1 AATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAG
* * ** ** *
15974 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTCCGAAAGTTCAACCGAGAACAAAGAAAGAAACAA
64 TTAAAAAAGAACTCGTAAAAGTTTGTCAAGT-TGAAAGTTCGGCCGAGAACCTAGAAAGAAA-TA
* * * * ***
16039 TTCTTACATAAATAACTTTTT--TT--TTTA-CAAAA--TG-----AAAAT-----CTATTTAGA
127 TTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG-
* ** * * *
16087 ACA-ATTGATGCGATTTCCCGAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTT
191 ACATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATT
* * * *
16151 GAATTCTTTATGGAAAAAAAGTT-TAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGG
256 GAATACTTTAAGGAACAAAAGTTAT-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA
* * * * ** * * *
16215 CTGAGAACCAATAGAGAAACAATTCTCACCTAAATAAGGTTTTAATTGAAAAACCAAAAGTAGTT
320 CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTT
* ** * * *
16280 TACAAAATGACAA-CTATTTA-AACCTAATGATGTGATTTTCCAAGCAT-GAATTGTACAATAAA
385 TACAAAATGACAATCTATTTAGAA-CAAATGATGCAATTTCCCGAGCATGGAA-TGTTCAA-AAA
* * * * * ** * *
16342 TT-ACTAAAGGAATGGATCGTCTTGAATAATTTAATGAA-AAAAATTATAAAAGAACTTGTAAAA
447 TTGTC-GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAA
* * * * * ** *
16405 GTTTGTCAAGTT-TAAAGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAGGATTTTT
510 GTTTGTCAAGTTCGAAAGTTCG-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTT
* * * * * *
16469 TAATTCAAAGACCAAAAGTTGTTTACAAAATGATAACTAATTAGACCAAATGATGCGATTTCCCA
574 TAATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTT-CCA
* * * * **
16534 -AGCATGAAATGTTCGAAAAATTCCTCGAAGGAATGGATCGTCTTGCATACTTTAAGGAACCAAA
638 GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAA
* * * * * **
16598 GTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTCGACCGTGAACAAAGAGAGAAATT
703 GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACA
* * * *
16663 ATTCTCACCTAAATAAGTTTTTAATTCACAGA-CAAAAGTTGTTTACAAAATAACAA-CTATTTA
768 ATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTA
* * **
16726 GACCAAATGATGCGATTTCTAGAG
833 GAACAAATGATACGATTTCCCGAG
* * * **
16750 CATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * * ** * *
16815 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGAAAGCTCGATCGAGAACCAAGAAAGAAACAATT
66 AAAAAAGAACTCGTAAAAGTTTGTCAAG-TTGAAAGTTCGGCCGAGAACCTAGAAAGAAA-TATT
* *
16880 CA-CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAACTATTTAGAC
129 -ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGAC
* * * * * *
16944 ATAATGATGCGATTTCCCAAGCATGGATTGTT-TAGAAAATGGCTCGAAGGAATGGATTGTCTTG
193 ATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTATTG
* * * * *
17008 AATGCTTTAAGGAATAAAAGTTATAAAAGAACAACTCATAAACGTTTGTCAAGTTTGAAAGTTCG
257 AATACTTTAAGGAACAAAAGTTATAAAAG---AACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG
* *
17073 ACCGAGAACCAAGAAATAAACAATTCTCTCATAAATAACTTTTTAATTTAAAGACCAAAAGTTGT
319 ACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGT
* * * * ** **
17138 TTACAAAATGCCAATCTATTTAGAACAAATGATACGATTTCTCGAGTGTGGAATGTTGGGAAAAT
384 TTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTT-CAAAAAT
* * * *
17203 TGTGCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTCAACAAAGAACTCTTAAATG
448 TGT-CGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAA-AAAGAACTCGTAAAAG
* * * ** * *
17268 TTTGTCAAGTTTGAAAGTTTTG-TCGAGAACCTAGATTGGAACTATTATCACCTAAATAAGCTTT
511 TTTGTCAAGTTCGAAAG-TTCGCT-GAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTT
*
17332 TAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTT-GAACCAAATGATACAATTTCCA
574 TAATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAG-ACCAAATGATACAATTTCCA
* * * * *
17396 GAGCATGGATTGTTCGAAAAATGGTTCGGAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAA
638 GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAA
* * ** *
17461 GTTATAAAAGAACTCATAAAAGTTTATCAAGTTCGGAAGTTCGGTCGAGAACCTAGAAAGAAACA
703 GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACA
* *
17526 ATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTA
768 ATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTA
* * ** *
17591 GAACAACTTATGTGATTTCCTGAG
833 GAACAAATGATACGATTTCCCGAG
* * * * * * * * * * *
17615 AATGGGATGTTCGAAAAGTTGTTCAAAGGTATAGATCGTGTTAAATAATTAAAGGAACCGAAGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * * * * *
17680 AAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGCCCAAAACCTAGAGAGAAACTATT
66 AAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TATT
* * *
17745 ATCACCTAAATAAGTTTTTTAATTCAAAGACCGAAAGTTTTTTATAAAATGAGAACTATTTAGAC
129 ATCACCTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-
* * *
17810 CA-AATGATGCGATTTCCTGAGCTTGGAATGTTC-AGAAAATTGCTCGAAGG-AT-CATC---TT
192 CATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTATT
* * * *
17868 GAATACTTTAAGGAATC-TAAGTTATAAAAGAAGTCGTAAAAGTTTGTTAACTTCGAAAGTTC-A
256 GAATACTTTAAGGAA-CAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA
* * * * * * * *
17931 GCCTAGAACCAAGAGAGTAACTATTCTCACCTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGT
320 -CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGT
* * * * * * **
17996 TCACAAAATTACAA-CTATTCAGACCAAATTG-TGCGATTTCTCGAGCATGGAATGTTCGGGAAA
384 TTACAAAATGACAATCTATTTAGAACAAA-TGATGCAATTTCCCGAGCATGGAATGTTC-AAAAA
* * * * * * * *
18059 TTGCTCAAAGGAATGGATCGTCTTGAATACTTTACGGAATCGTAGTTATGAATGAACTCGTAAAG
447 TTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAA
* * * * * * *
18124 GTTTTTCAGGTTCGTAAGTTCTACCGAGAACCAA-AGGAGAAACAATTCTCACCTAAATAAG-TT
510 GTTTGTCAAGTTCGAAAGTTC-GCTGAGAACCAAGA-GAGAAACTATTATCACCTAAATAAGTTT
* * * * * * ** *
18187 TTAATTGAAAAACCAAAAATAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTTCC
573 TTAATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGAT-ACAATTTCC
* * * * * *
18252 A-AGCATGGACTGTAT-AGAAAATTGCTCAAAGGAATGGATTGTCTTGAATACTTTAATGAACAA
637 AGAGCATGGAATGT-TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAA
* ** * *
18315 AAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCAACCGAGAACCAATAAAGAAA
701 AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAA
* * ** *
18379 CAATTCTCAGATAAAGAATTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAA-CTATT
766 CAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATT
* **
18443 TAGACCAAATGATGA-GATTTCCTAAG
831 TAGAACAAATGAT-ACGATTTCCCGAG
** * * * * *
18469 CTTGGAATGTTC-AGAAAATTGCTGGAAGGAATGGTTCATCTTGAATACTTTAAAGAACCGAAGT
1 AATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * * *
18533 TATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACTAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * * *
18598 TCTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACATAATGGCAACTATTTAGAC
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGAC
* ** * *
18663 -TAAATGATGTGATTT-CTAGAGCATGGAATGTTCTTAAAATTGCT-AAAGCGAATGGATCGTCT
193 AT-AATGATGCGATTTCCTA-AGCATGGAATGTTCGAAAAATTGCTCGAAG-GAATGGATCGTAT
* *
18725 TGAATAGTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTC-AGAAGTTC
255 TGAATACTTTAAGGAA-CAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTC
* * * * *
18788 GACCGAGAACCAA-AAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTA
318 GACCGAGAACCAAGAA-AGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTT
* * * * * ** * * **
18852 GTTTAAAAAATAACAA-CAATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTATGGAAA
382 GTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGT-TCAAAA
* * * * ** *
18916 ATTGCTTGAAAGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTCGTTAA
446 ATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAA
* * *
18981 AGTTTGTCAAGTTCGAAAGTTCGATCGAGAA-CATAGAAAGAAA-TA--AT--TCTAACATAA--
509 AGTTTGTCAAGTTCGAAAGTTCGCT-GAGAACCA-AGAGAGAAACTATTATCACCTAA-ATAAGT
* * ** * ***
19038 --ATAATT------------TTT-TTTACAAAATGACAATCTATTTAGAATAATTGATGTGATTT
571 TTTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAA-CTATTTAGACCAAATGATACAATTT
* * * * *
19088 CCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTATGGAACA
635 CCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATA
* * ** * ** * *
19153 GAAGTTA-AAAAGGTACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGGCTAAGAACCAATAGAGA
700 AAAGTTATAAAA-GAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGA
* ** * * * * *
19217 AACTATGATCACCTAAATAAGTTTTTAATTCAATGTCCAAAAGTTGTTTATAAAATGACAA-CTA
764 AACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTA
* * *
19281 TTTAGACCAAGTGA-ATCGATTTCCTGAG
829 TTTAGAACAAATGATA-CGATTTCCCGAG
** ** * *
19309 CTTGGAATGTTTCG-AGGATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-TCAAAG
1 AATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAG
* * * * * * * * * * *
19372 TTATAAAATAACTTGTAAAAGTTTGACAACTTTGAAAGTTTGGGCGTGAACCAAGAGAGGAACTA
64 TTAAAAAAGAACTCGTAAAAGTTTGTCAA-GTTGAAAGTTCGGCCGAGAACCTAGA-AAGAAATA
* * *
19437 TTGTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGA
127 TTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA
* * ** ***
19502 CCA-AATGATGCGATTT-CTCGAGCATGGAATGTTTGAAAAATTG-TTAAAGGAATGGATCACCT
192 -CATAATGATGCGATTTCCT-AAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTAT
* * * * * * *
19564 TGAATACTTTTAAGGAATC-GAAGTTATGAAAGAGCTCGTATAAGTTTTTCAGGTTCGTAAGTTC
255 TGAATAC-TTTAAGGAA-CAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
* * * * * *
19628 GGCCAAGAACCAA-AAGAGAAACAATTCTCACCTAAATAAGTTTATAATTGGAAA-ACCAAAAGT
318 GACCGAGAACCAAGAA-AGAAACAATTCTCACATAAATAACTTTTTAATT-TAAAGACCAAAAGT
* * * * * ** * * * *
19691 AGTTTACAAAATAACAA-CCATTTAGACCTAATGATGTGATTTCCCAAGCATAGACTGTACAAAA
381 TGTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAA
* * *
19755 AATTGGTCGAAGGAATGGATCATCTTGAATACTTTAATGAA-CGAAAGTTATAAAAGCACTTGTA
445 AATT-GTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCG-AAGTTA-AAAAGAACTCGTA
* * * ** * * * ** *
19819 AAAGTTTTTCAACTT-TAAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCAGATAAA-GAGT
507 AAAGTTTGTCAAGTTCGAAAGTTCG-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAG-
** * * * * * * *
19882 TTTTTTAATTCAAAGATAAAAAGTTGTTTACAAAAGTTCGGCCCAAAGGCAACTGAGA-AATAAT
570 -TTTTTAATTCAAAGACCAAAATTTGTTTATAAAA--T--G-AC-AA--CTATTTAGACCA-AAT
** * *** ** * * ** * * *
19946 TCTCACCTAAATT--AGTTTTTAATTCAAAG-ACCAAAACTATTTAG-ACGAAATG-ATGCGATT
625 GAT-A-C-AATTTCCAG---AGCATGGAATGTTCGGAAA--A-TT-GCTCG-AAGGAATG-GATC
* * ** * * * ** * * **
20006 TTCTCGAGGA-TTGAATGTTCAA-AAAA-TTGCTCGAAGGACT-GGATCA-TCTTGAATACTTTA
678 GTCTTGAATACTTTAA-G--GAATAAAAGTT-ATAAAAGAACTCGTAAAAGT-TTG--T-C---A
* * * * **** *
20066 AGGAATC-GAAGTTATGA--AAGAA-CTAGTAAAAGTTTTTTTGGTTTGTAAGTT-TGGC-CGAG
732 A-G-TTCGGAAGTT-CGACCGAGAACCAAG--AAA---------G-AAACAA-TTCT--CAC-AT
* ***** ** ** **
20125 AACCAAAAGAGAAACAATTC--TCACCTAAATAAGTT-TTTA-ATTGAAAAAACAAAAGTATTTA
778 AA--ATAAG-CTTTTAATTCAAAGACC--AA-AAGTTGTTTACA---AAATGAC-AATCTATTTA
* * * * *
20186 -CA-AAATGACAACTATTTAGACCTA-
833 GAACAAATGA-TACGATTT--CCCGAG
* * *
20210 ATGATGTGATTTCCCAAGCATGGACTGTACGAAAAATTGCTCGAAGGAATGAATCGTCTTAAATA
1 A--ATG-G--------A--AT-GT---T-CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * ** * **
20275 CTTTAAGAAAC-AAATGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAG
48 CTTTAAGGAACTGAA-GTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAG
* * * * * * * *
20339 AACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAACACCAAAAGTTGTTTACA
111 AACCTAGAAAGAAA-TATTATCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTATA
* ** * * *
20403 AAATGACAATCTATTTAGAACA-ATTTTTGCGATTTCCCAAGTATGGAATGTTTG-AAAATTGCT
174 AAATGACAA-CTATTTAG-ACATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCT
** * * * *
20466 TAAAGGAATGGACCGTGTTGAATTCTTTAA--AACAAAAGTTATAAAAGAACTTGTAAAAGTTT-
237 CGAAGGAATGGATCGTATTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * *
20528 TCCAAGTT-TAATA-TTCGATCGAGAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAA
302 T-CAAGTTCGAA-AGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAA
** * * * **
20591 TTCGAAGACCAAAAGTTGTTTACAAAATCACAA-CTATTTAGACCAAATGATGCGATTTCCTAAG
365 TTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAG
* * * * * **
20655 CATGTAATGTTCGAAAAACTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGATCAAAAGTT
430 CATGGAATGTTC-AAAAATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAG-T
* * *
20720 TTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTTGGCCGAGAACCAAGAGAGAAA-TAAT
492 TAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG-TTCGCTGAGAACCAAGAGAGAAACT-AT
* * * * * * *
20784 TCTCACATAAATAACATTTTT-ATTCAAAGAACAAAAGTTGTTTACAAAATGACAATCTATTTGG
555 TATCACCTAAATAA-GTTTTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAA-CTATTTAG
* * * * * * *
20848 AACAATTTATGCGATTTTCCA-AGCATAGAATGTTCGAAAAATTGCTCGAAGGAATGG-T-G--T
618 ACCAAATGATAC-AATTTCCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCT
* * * * * ** *
20908 TGAATACTTTATGGAGCT-GAAGTTA-AAAAAAAGCTCGTAAAAGTTTGTCAACTTCAAAAGTTT
682 TGAATACTTTAAGGA-ATAAAAGTTATAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGGAAGTTC
* * * * * * * * * *
20971 GGCTGAGAACCAAGAGAGGAACTATTATCACTTAAATATGGTTTTAATACAAAGACCAAAAGTTG
745 GACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTG
* * * ** * * *
21036 TTTATAAAATGAGAA-CTATTTAGACCATGTGATGCAATTTCCTGAG
810 TTTACAAAATGACAATCTATTTAGAACAAATGATACGATTTCCCGAG
* * * * * *
21082 CATGGAATGTTTGAAAAATTG-TGCGAAGGAATGGATCGTTTTAAATACTTTAATGAACTGATGT
1 AATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * ** * * * * *
21146 TATAGAAGAATTCGTAAAAGTTTCTCAAGTTCGGTAGTTCGACTGGGAACCAAGAGAGAAACTAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * *
21211 TCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGAC
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-
* * *
21276 CA-AATGATTCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
192 CATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATTG
* * *
21340 AATAC--T------------TTAT----GAA-AC--AAAAGTTTGTCAAGTTCGTAAGTTCGACT
257 AATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACC
* * * * * * *
21384 AAGAACAAAGAAA-AAACAATTCTCTCATAAATAACATTTTAATTTCAAG-CACATAAGTTTTTT
322 GAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAC-CAAAAG--TTGT
* * *
21447 TTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAACATGGAATGTTCAAAAAAT
384 TTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAAT
* ** *
21512 TGCACGAAGGAATGGATTGTCTTGAATACTTTAAGGAGCCGAAGTTAAAAAAGAACTCGTAAAAG
448 TG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTT-AAAAAGAACTCGTAAAAG
* * * *
21577 TTTGTCAACTTCGAAAGTTTGGCCGAGAACCAAGAGTGAAACTATTATCACCTAAATAAGTTTTT
511 TTTGTCAAGTTCGAAAG-TTCGCTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTT
* * * * * *
21642 AGTTCAAAGACC-GAATGTTGTTTATAAAATGGCAACTATTTAGACCAAATGATGCGATTTCCTG
575 AATTCAAAGACCAAAAT-TTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTTCCAG
* ** * * * **
21706 AGCAAGGAATGTTCATAAAATTGCTCGAAGGAATGGATCGTCTTGAAAAATTTATGGAAT-CGA-
639 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAG
* * * ** * * **
21769 TTATAAAAGAACTCATAAAAGTTTGTCAACTTTGGAAGTTCGACTTTA-AACAAAGAGAGAAATT
704 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGAC-CGAGAACCAAGAAAGAAACA
* * *
21833 ATTCTCACCTAAATAAGTTTTTAATTCACAGA-CAAAAGTTGTTTACAAAATGACAA-CTATTTA
768 ATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTA
* * **
21896 GACCAAATGATGCGATTTCTTGAG
833 GAACAAATGATACGATTTCCCGAG
* * * * * * *
21920 CATGGAATGTTTGAAAAATTGCTTGAAGGAATGGATCGCCTTAAATACTTGAAGGAAC-CAATGT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAA-GT
* * * * * *** * *
21984 TATAAAAGAACTTGTAAAATTTTGACAAGTTCAAAAGTTCGATAGAGAACCAAGAAAGAAACAAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* ** * * * * * *
22049 TAGCAGATAAATAACTTTTAAATTTAAAAACCAAAAGTTGTTTACAAAATGACAAATATTTAGAC
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-
* * * * * *
22114 CA-AATGATTCGATTTCCCAAGTATGGAATGTTC-AGAAATTTGCTTGAAGGAATGGATCGTCTT
192 CATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTATT
*
22177 GAATAC--T------------TTAT---GGAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGAC
256 GAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC
* * * *
22221 CAAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTT
321 CGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTT
22286 ACAAAATGACAATCTATTTAGAAC-AAT--TG--ATTTCCCGAGCATGGAATGTTCGAAAAATTG
386 ACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAATTG
* * * *
22346 CGCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTTGTAAATGTT
450 -TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTT-AAAAAGAACTCGTAAAAGTT
* * * * * * * * *
22411 TTTCAAGTT-TAAAGTTCGGCCT-AGATCCAAGAAAGAAACAATTCTCACATAAACAATTTTTTA
513 TGTCAAGTTCGAAAGTTC-G-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTA
* * * *
22474 ATTCAAAGACCAAAATTTGTTTACAAAATGACAACTATTTAGACCAAACGATACGATTTCCAAAG
576 ATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTTCCAGAG
* ** * **** *
22539 CATGAAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTTCTTAAACT-GAAGT
641 CATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-TAAAAGT
* * * * * * * * *
22603 TAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTG-CTGAGAACCAAGAGAGGAACTA
705 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG-TTCGACCGAGAACCAAGAAAGAAACAA
* * * * * * *
22667 TTATCACTTAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTATAAAATGAGAA-C-ATTTAG
769 TTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAG
* ** * * *
22730 ACCATGTGATGCAATTTCCTGAG
834 AACAAATGATACGATTTCCCGAG
* * * *
22753 CATGGAATGTTCGAAAAATTG-TGCGAAGGAATGGATCGTCTTAAATA-TTTAATGAACTGATGT
1 AATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * * * * * *
22816 TATAGAAGAATTCATAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAACTAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * *
22881 TCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGAC
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-
* * * * * *
22946 CA-AATGATTCGATTTCCCAAGTATGGAATGTTC-AGAAATTTGCTTGAAGGAATGGATCGTCTT
192 CATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTATT
*
23009 GAATAC--T------------TTAT---GGAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGAC
256 GAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC
* *
23053 CAAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGCCAAAAGTTGTTT
321 CGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTT
* *
23118 ACAAAATGACAATTTATTTAGAAC-AAT--TG--ATTTCCCGAGCATGGAATGTTCGGAAAATTG
386 ACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAATTG
* *
23178 -CGTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGT
450 TC--GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTT-AAAAAGAACTCGTAAAAGT
* ** * ** * * *
23242 TTTTCAAGTTCGAAAGTTTTACCGAGAACTTAGAGGGGAACTATTATCACCTAATTAAGTTTTTA
512 TTGTCAAGTTCGAAAG-TTCGCTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTA
* * * **
23307 ATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTATTT-GAACGAAATGATATGATTTCCAGA
576 ATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAG-ACCAAATGATACAATTTCCAGA
* * * * * * * *** *
23371 GTATGGATTGTTCGAAAAATGGATCGGAGGAATGGTTCGTCTTGAATACTTTAACTCATAAAA-C
640 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGT
* * ** * *
23435 TATAAAAGAACTCATAAAAGTTTGTCACGTTCAAAAGTTAGACCGAGAACCTAGAAAGAAACAAT
705 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAAT
* * * *
23500 TCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTATTTAGA
770 TCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGA
* * * *
23565 ACAATTGATGCGACTTCCCAAG
835 ACAAATGATACGATTTCCCGAG
* * * * * * * **
23587 AATTGAATGTTTGAAAAATTGCTCAAAGGTATAGATCATCTTGAATAATTTAAGGAACCAAAGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * * * * *
23652 AAAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGATCCAAGAGAGAAACTATT
66 AAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TATT
* * * *
23717 ATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTAAAAAATGACAACTATTTAGACC
129 ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-C
* * * * *
23782 A-AATGATGCGATTTCCTGACCAAGGAATGTTC-AGAAAATTGCTCGAAGGAATGAATCGTCTTG
193 ATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTATTG
* * * * * * *
23845 AATAATTTATGGAATC-GATGTTATAACAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTCGAC
257 AATACTTTAAGGAA-CAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC
*** * * ** * * *
23909 TTTGAACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTT
321 CGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTT
* * *
23973 ACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTG
386 ACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAATTG
** ** * ** * *
24037 CTTAAAGGAATGGATCGCCTTAAATACTTTAAGGAACAAAAGTTATAAAAGAACTTGTAAAATTT
450 -TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAAGTT
* * * * * * * *
24102 TGTCAAGTCCAAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACATAAATAACTTTTAAA
513 TGTCAAGTTCGAAAGTTCGCT-GAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAA
* * * * *
24167 TTTAAAGACCAAAAGTTT-TTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCTA-A
577 TTCAAAGACCAAAA-TTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTTCC-AGA
** * * *
24230 GCATGGAATGTTCAAAAAATTACTCGAAGGAATGGATCGTCTTGAATAATTTATGGAATAAAAGT
640 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGT
*
24295 T-T----G---TC----AAG--T-TCAA------AAGTTCGACCAAGAACCAAGAAAGAAACAAT
705 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAAT
* * *
24339 TCTCACATAAAT-AGCTTTTTAATTTAAAGGA-CAAAAGCCT-TTTACAAAATGATAATCTATTT
770 TCTCACATAAATAAGC-TTTTAATTCAAA-GACCAAAAG-TTGTTTACAAAATGACAATCTATTT
* * *
24401 AGAACAATTGATGCAATTTCCCGA-
832 AGAACAAATGATACGATTTCCCGAG
* ** * * *
24425 ACAAGGAA-GCTTCGAGTAATTGCACGAAGGAATGGATCGTCTTTG-ATACTTTATGGAACCGAA
1 A-ATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACTGAA
* * * * * *
24488 GTTAAAAAATAACTCATAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGAGAAACT
63 GTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTGA-AAGTTCGGCCGAGAACCTAGAAAGAAA-T
* * * * * *
24553 ATTATCTCCTAAA-AAGTTTTTAATTCAAAAATCGAATGTTGTTTATAAAATGACAACTACTTAG
126 ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG
* * * * * * *
24617 ACCA-AATGATGTGATTTCCTGAGCACGAAATATT-TAGAAAATTGCTCGAAGGAATAGATCG-A
191 A-CATAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTA
* * * ** * * *
24679 CTTGAATAATTTATGGACCCGATGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAAAAGTTC
254 -TTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
* * ** * * *
24744 GACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
318 GACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTG
* ** * *
24809 TTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAAT
383 TTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAT
* * *
24873 TTTCCAGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
448 TGT-C-GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAA
* * * * *
24938 GTTTGTCAAGTTCAAAAGCTCGGTCGAGAACCAAGAAAGAAACAATTCA-CACCTAAATAA-TAT
510 GTTTGTCAAGTTCGAAAGTTCGCT-GAGAACCAAGAGAGAAACTATT-ATCACCTAAATAAGT-T
* * * * * *
25001 TTTAATTCAAAGACCAAAAGTAGTCTACAAAATGACAACTATTT-GA-CATAAAGATGCAATTTC
572 TTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCA-AATGATACAATTT-
* * * *
25064 CCA-AGCATGGACTGTTC-GAAGAATGGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAAT
635 CCAGAGCATGGAATGTTCGGAA-AATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
*
25127 AAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCGAGAACCAAGAAAGA
699 AAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGA
* * * *
25192 AACAATTCTCACATAAATAA-CTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAATGACAATCT
764 AACAATTCTCACATAAATAAGC-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCT
25256 ATTTAGAAC-AAT--T--GATTTCCCGAG
828 ATTTAGAACAAATGATACGATTTCCCGAG
* * * **
25280 CATGGAATGTTCGAAAAATTGCGCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * * * * * * * *
25345 AAAAAAGAACTTGTAAATGTTTTTCAAGTTTAAAGTTCGGCCTAGATCCAAGAAAGAAACAATTC
66 AAAAAAGAACTCGTAAAAGTTTGTCAAGTTGAAAGTTCGGCCGAGAACCTAGAAAGAAA-TATTA
* * * * *
25410 TCACATAAACAATTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAACTATTTAGACCA
130 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-CA
* * * * * *
25475 -AACGATACGATTTCCAAAGCATGAAATGTT-TAGAAAATTGCTCGAAGGAATGGATCGTGTTGA
194 TAATGATGCGATTTCCTAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTATTGA
**** ** * * * * *
25538 ATACTTTCTTAAACTGAAGTTAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTG-CT
258 ATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG-TTCGACC
* * * * * ** **
25602 GAGAACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTA
322 GAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTA
* * * ** *
25667 TAAAATGAGAA-C-ATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTCGAAAAATTGT
387 CAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAATTGT
* * * * * * * *
25730 GCGAAGGAATGGATCGTCTTAAATA-TTTAATGAACTGATGTTATAGAAGAATTCATAAAAGTTT
451 -CGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAAGTTT
* *
25794 GTCAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAAT
514 GTCAAGTTCGAAAGTTCG-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAAT
* * * * * *
25859 TCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCA-AGC
578 TCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTT-CCAGAGC
*
25923 ATGGAATGTTC-GAGAAATTGCTCGAACGAATGGATCGTCTTGAATACTTT-----AT----G--
642 ATGGAATGTTCGGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTT
* *
25976 ------GAA--C--AAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACAAAGAAA-AAACAATT
706 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATT
* * * * * *
26030 CTCTCATAAATAA-CATTTTAATTTAAAGAACATAAGTTTTTTTTTACAAAATCACAATCTATTT
771 CTCACATAAATAAGC-TTTTAATTCAAAGACCAAAAG---TTGTTTACAAAATGACAATCTATTT
* *
26094 AGAACAATTGATGCGATTTCCCGA-
832 AGAACAAATGATACGATTTCCCGAG
* * * *
26118 ACATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAGGGAGCCGAAGT
1 A-ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * *
26183 TAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGAACCAAGAGAGAAACTAT
65 TAAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TAT
* * * *
26248 TGTCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAATGACAACTATTTAGAC
128 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-
* * * *
26313 CA-AATGATGCGATTTCCTGAGCAAGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTG
192 CATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATTG
* * ** * * *
26377 AATAATTTATGGAACCGATGTTATAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTCGACT
257 AATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC-
** * * ** * * *
26442 TTA-AACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTT
321 CGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTT
* * *
26505 ACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTG
386 ACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAAATTG
* *** * * * **
26569 CTTGAAGGAATGGATTGCCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAATTTT
450 -TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAAGTT
* * * * * *
26634 TGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACATAAATAACTTTTAAA
513 TGTCAAGTTCGAAAGTTCGCT-GAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAA
* * * * ***
26699 TTTAAAGACCAAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTTGATTTCTCA-AG
577 TTCAAAGACCAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTTC-CAGAG
*
26763 CATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT-----AT----G--
641 CATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTT
* * *
26817 -----A-AA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAACTAAGAAAGAAACAATT
706 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATT
* *
26872 CTCACATAAATAA-CTTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAATGACAATCTATTTAG
771 CTCACATAAATAAGC-TTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAATCTATTTAG
* *** *
26935 AACAATTGATGTAATTTCTCGA-
834 AACAAATGATACGATTTCCCGAG
* ** * *
26957 ACATGGAAGGTTCGAGTAATTGCACGAAGGAATGGATCGTCTTCG-ATACTTTATGGAA-TCGAA
1 A-ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTT-GAATACTTTAAGGAACT-GAA
* ** * * * * * * *
27020 GTTAAAAAATAGTTCATAAAAGTTTGTTAACTTCATAAGTTCAGCCGAGAACCAAGAGAGAAACT
63 GTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTGA-AAGTTCGGCCGAGAACCTAGAAAGAAA-T
* ** * * *
27085 ATTACCACCTAAATAAGTTTTTAATTTGAAGAACAAATGTTCTTTATAAAATGACAACTTATTTA
126 ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAC-TATTTA
* * * * * *
27150 GACCA-AATGATGCGATTT-ATGAGCATAGAATGTTCAAAAAAATTGATCGAAGGAATGGATTGT
190 GA-CATAATGATGCGATTTCCTAAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGT
* * * *** * * * *
27213 CTTGAATAATTTATGGAACCGGAGTTATAAAAGAGCTCGTAAAAGTTTGTCAACTTCGGATGTTC
253 ATTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
** * * * * * * *
27278 GGTCGTGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTG
318 GACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTG
* *
27343 TTTACAAAATGACAA-CTATTTAG-ACGAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAA
383 TTTACAAAATGACAATCTATTTAGAAC-AAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAA
* * * * * * *
27406 ATTGCTTGAAGGAGTGGATCGTCCTAAATACTTTAATGAACTGAAGTTATAAAAGAACTCGTAAA
446 ATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAA
* * * * **
27471 AGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGA-A-AAAATAATTCTCACATAAATAACAT
509 AGTTTGTCAAGTTCGAAAGTTCG-CTGAGAACCAAGAGAGAAACT-ATTATCACCTAAATAAGTT
** * * * * * * * *
27534 TTTAATTTGAAGAACATAAGTTTTTTTTACAAAATGACAAGCTATTTAGAACAATTGATGCGATT
572 TTTAATTCAAAGACCA-AA-ATTTGTTTATAAAATGACAA-CTATTTAGACCAAATGATACAATT
* * * * * * * * *
27599 TCCCGAACATGGAATGTTCGAAAAATTGCACAAAGGAATGGATCATCTTAAATAATTTAAGGAAC
634 TCCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
** * * * * ** *
27664 CGAAGTTAAAAAAGAACTTGTAAAAGTTTTTGAAGTTCAAAAGTTCGGCCGAGAACCAA-AAGAG
699 AAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAA-AG
* * * * * * * *
27728 AAACTATTATCACCTAAA-AAGTTTTTAATTCAAAGATCGAATGTTGTTTATAAAATGACAA-CT
763 AAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCT
* * * ** *
27791 ACTTAGACCGAATGATGTGATTTCCTGAG
828 ATTTAGAACAAATGATACGATTTCCCGAG
* * * * * * * * * * * *
27820 CACGAAATATTCAAAAAATTGCTCGAAGGAATAGATCGACTTGAATA-ATTATGGACCCGATGTT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * * * * * * * *
27884 ATAAAAGAATTCGTAAAAGTTTGTCAACTTCGGAAGTTTGACCGTGAACCAAGAGAGAAATTATT
66 AAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TATT
* *
27949 CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
129 ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-C
* * * * *
28014 A-AATGATGTGATTT-CTCGAGCATGGAATGTTCGAAAATTTTC-CTGAAGGAATGGATCGTCTT
193 ATAATGATGCGATTTCCT-AAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCGTATT
* ** * * **
28076 AAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGTCAAGTTCGAAATTTCGGT
256 GAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC
* * * * * * *
28141 CGAGAACCAAGAAAGAAGCAATTCACACCTAAGTAA-TATTTTAATTCAAAGACCAAAAGTAGTC
321 CGAGAACCAAGAAAGAAACAATTCTCACATAAATAACT-TTTTAATTTAAAGACCAAAAGTTGTT
* * * *
28205 TACAAAATGACAA-CTATTT-G-ACATAATGATGCAGTTTCCCAAGCATGGACTGTTTGAAAAAT
385 TACAAAATGACAATCTATTTAGAACA-AATGATGCAATTTCCCGAGCATGGAATG-TTCAAAAAT
* ** * ***
28267 GGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAATAAAAGTTATAAAAGAACTCGTAAAAG
448 TG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAAG
* * ** * * * * *
28332 TTTGTCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTT
511 TTTGTCAAGTTCGAAAGTTCG-CTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTT
* * * * * * * * *
28397 TATTTAATGGCCAAAAGTTGTTTACAAAATGACAATCTATTTAGAAC-AAT--T--GATTTCCCG
575 AATTCAAAGACCAAAATTTGTTTATAAAATGACAA-CTATTTAGACCAAATGATACAATTTCCAG
* * * ***
28457 AGCATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAG
639 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAG
* * * * ** * * *
28522 TTAAAAAAGAACTCGTAAATGTTTTTCAAGTTCAGAAGTTCTG-CCGAGAACTTAGAGAGGAACT
704 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GACCGAGAACCAAGAAAGAAACA
* * * * *
28586 ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAA-CTATTT-
768 ATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTA
* *
28649 GAACGAAATGATATGATTTCCAGAG
833 GAAC-AAATGATACGATTTCCCGAG
* * * * * * * **
28674 CATGGATTATTCGGAAAATGGCTCGGAGGAATGGATCGTCTTGAATACTTTAAGGAA-TAAAACT
1 AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
* * * * * *
28738 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGACCGAAAACCTAGAAGGAAACAATT
66 AAAAAAGAACTCGTAAAAGTTTGTCAAGTT-GAAAGTTCGGCCGAGAACCTAGAAAGAAA-TATT
* * * * *
28803 CTTACATAAATAAGTTTTT-ATTCCAAAGACCAAAAGTTGTTTAGAAAACGACAATCTATTTAGA
129 ATCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTATAAAATGACAA-CTATTTAG-
* * * * * * * *
28867 ACA-ATTGATGCGATTTCCCAAGAATTGAATGTTTGAAAAATTGCTCGAAGGTATAGATCGTCTT
191 ACATAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATT
* * * * * * *
28931 GAATAATTTAAGGAATC-GAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGGAAGTTCGG
256 GAATACTTTAAGGAA-CAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-G
* * * * * * *
28995 TCC-A-AAACATAGAGAGAAACTATTATCA-ACTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
319 ACCGAGAACCA-AGAAAGAAACAATTCTCACA-TAAATAACTTTTTAATTTAAAGACCAAAAGTT
* * * ** * * * * * *
29057 GTGTATAAAATGACAA-CTATTTAGACCAACCGAAGCGATTTCCTGGGCTTGAAATGTTCAAAAA
382 GTTTACAAAATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTC-AAAA
* * * * *
29121 ATTGCTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAATAAGTCGTAAA
446 ATTG-TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAA
29186 AGT
509 AGT
29189 ATGGAATGTT
Statistics
Matches: 16578, Mismatches: 3379, Indels: 2380
0.74 0.15 0.11
Matches are distributed among these distances:
818 128 0.01
819 55 0.00
820 143 0.01
821 4 0.00
823 3 0.00
825 4 0.00
826 3 0.00
827 6 0.00
828 2 0.00
829 2 0.00
830 34 0.00
831 217 0.01
832 693 0.04
833 303 0.02
834 133 0.01
835 300 0.02
836 135 0.01
837 558 0.03
838 1156 0.07
839 1371 0.08
840 1279 0.08
841 428 0.03
842 73 0.00
843 84 0.01
844 9 0.00
845 10 0.00
846 7 0.00
847 4 0.00
848 28 0.00
849 5 0.00
850 12 0.00
851 18 0.00
852 141 0.01
853 434 0.03
854 850 0.05
855 395 0.02
856 408 0.02
857 235 0.01
858 1057 0.06
859 948 0.06
860 1222 0.07
861 696 0.04
862 201 0.01
863 461 0.03
864 92 0.01
865 147 0.01
866 153 0.01
867 5 0.00
868 11 0.00
869 3 0.00
870 9 0.00
871 15 0.00
872 25 0.00
873 11 0.00
874 29 0.00
875 42 0.00
876 40 0.00
877 12 0.00
878 11 0.00
879 11 0.00
880 19 0.00
881 30 0.00
882 23 0.00
883 5 0.00
884 5 0.00
885 1 0.00
886 1 0.00
887 6 0.00
888 5 0.00
889 8 0.00
890 11 0.00
891 24 0.00
892 44 0.00
893 25 0.00
894 27 0.00
895 15 0.00
896 12 0.00
897 22 0.00
898 25 0.00
899 14 0.00
900 9 0.00
901 12 0.00
902 9 0.00
903 11 0.00
904 6 0.00
905 8 0.00
906 11 0.00
907 16 0.00
908 14 0.00
909 16 0.00
910 6 0.00
911 6 0.00
912 17 0.00
913 11 0.00
914 10 0.00
915 12 0.00
916 212 0.01
917 96 0.01
918 28 0.00
919 170 0.01
920 66 0.00
921 9 0.00
922 3 0.00
923 4 0.00
924 5 0.00
926 1 0.00
927 2 0.00
929 3 0.00
930 1 0.00
931 1 0.00
932 4 0.00
933 2 0.00
934 1 0.00
937 3 0.00
938 4 0.00
939 5 0.00
940 10 0.00
941 6 0.00
942 18 0.00
943 19 0.00
944 9 0.00
945 5 0.00
946 4 0.00
947 6 0.00
948 10 0.00
949 5 0.00
950 2 0.00
951 2 0.00
952 3 0.00
953 1 0.00
954 9 0.00
955 6 0.00
956 2 0.00
957 2 0.00
958 6 0.00
959 3 0.00
960 10 0.00
961 4 0.00
962 3 0.00
963 3 0.00
964 3 0.00
965 1 0.00
966 8 0.00
967 12 0.00
968 12 0.00
969 5 0.00
970 12 0.00
971 12 0.00
972 12 0.00
973 11 0.00
974 13 0.00
975 12 0.00
976 5 0.00
977 13 0.00
978 12 0.00
979 8 0.00
980 9 0.00
981 6 0.00
982 8 0.00
983 9 0.00
984 9 0.00
985 15 0.00
986 21 0.00
987 10 0.00
988 17 0.00
989 17 0.00
990 10 0.00
991 5 0.00
992 3 0.00
993 7 0.00
994 3 0.00
995 8 0.00
996 9 0.00
997 11 0.00
998 16 0.00
999 15 0.00
1000 1 0.00
1001 12 0.00
1002 26 0.00
1003 14 0.00
1004 7 0.00
1005 3 0.00
1008 8 0.00
1009 3 0.00
1010 5 0.00
1011 3 0.00
1012 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (856 bp):
AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
AAAAAAGAACTCGTAAAAGTTTGTCAAGTTGAAAGTTCGGCCGAGAACCTAGAAAGAAATATTAT
CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACATA
ATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTATTGAATA
CTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGA
ACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAA
ATGACAATCTATTTAGAACAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAATTGTCGAAG
GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGT
TCGAAAGTTCGCTGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGAC
CAAAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATACAATTTCCAGAGCATGGAATGT
TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAAC
TCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAA
TAAGCTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAAATGATAC
GATTTCCCGAG
Found at i:12567 original size:12 final size:12
Alignment explanation
Indices: 12550--12576 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
12540 TAGATCATCT
12550 TGAATAATTTAA
1 TGAATAATTTAA
12562 TGAATAATTTAA
1 TGAATAATTTAA
12574 TGA
1 TGA
12577 TACGGCCACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (12 bp):
TGAATAATTTAA
Found at i:12968 original size:37 final size:38
Alignment explanation
Indices: 12921--12993 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 38
12911 CTGGACATTT
*
12921 TTATTAAATAG-GGTTTTAATGTGTCTTAGTTTGATAC
1 TTATTAAATAGTGGTTTTAATGTGTCTAAGTTTGATAC
* *
12958 TTATTTAATAGTTGTTTTTAATGTGTCTAAGTTTGA
1 TTATTAAATAG-TGGTTTTAATGTGTCTAAGTTTGA
12994 GACAAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 10 0.32
39 21 0.68
ACGTcount: A:0.26, C:0.04, G:0.18, T:0.52
Consensus pattern (38 bp):
TTATTAAATAGTGGTTTTAATGTGTCTAAGTTTGATAC
Found at i:14423 original size:215 final size:214
Alignment explanation
Indices: 14041--29188 Score: 12785
Period size: 215 Copynumber: 71.1 Consensus size: 214
14031 TTAACGAATA
* * * * ***
14041 GAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGTTGAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
14106 ACTATTATTACCTAAATAAGTTTTTAATTCAAAGA-TAGAATGTTGTTTATAAAATGACAACTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAACTAT
* ** * *
14170 TTAGACCAAATGATGTGATTTCTTGAGCACGGAATGTTCAGAAAATTGCTCAAAGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
* *
14235 TCTTGAATAATTTATGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * *
14256 GATGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCAACCGTGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
*
14321 ATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * *
14386 TAGACCAAATGATGTGATTTCTCGAGCATGCAATGTTCGAAAAATTGCTTGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGT
* *
14451 CTTAAATACTTTACGGAACC
195 CTTGAATACTTTAAGGAACC
* * ** *
14471 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * *
14536 ACAATTCACACCTAAATAAGTTTTTAATTCAAAGATCAAAAGTGGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * * *
14601 TAG-CCATAATGATGCAATTTCCCAAGCATGG-ACGTTCGGAAAATGGCTCGAAGGAATGGATTG
131 TAGACCA-AATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
* * **
14664 TATTGAATGCTTTAAGGAATA
194 TCTTGAATACTTTAAGGAACC
* * * * * * *
14685 AAAGATATTAAACAACTCGTAAAAATTTGTCAAGTTCAAAAGTTCGACCGAAAACCAAGA-AGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * * *
14749 ACAATTCTCACATAAATAACTTTTTAATTTAAAGACAAAAAGTTGATTACAAAATGCCAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* ** * * * *
14814 TTAGAACAAATGATAAGATTTCCCTAGCATGGAATGTTTGGAAAAATGAGT-GAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTG-CTCGAAGGAATGGATC
* *
14878 ATCTTGAATACTTTAAGGAATC
193 GTCTTGAATACTTTAAGGAACC
* * * * *
14900 GAAGTCA-ACAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTG-TCGAGAACCTAGAGAG
1 GAAGTTATA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GACCGAGAACCAAGAGAG
** * * * *
14963 GTACTATTATCACCTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTATAATATGACAACTA
64 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * ** * * * * * *
15028 TTT-GAAGCAAATGATACGATTTCCAAAGCATAGATTGTTTGGAAAATGGCTGGGAGGAATGGAT
129 TTTAG-ACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGGAT
* **
15092 CGTCTTGAATACTTTAAGAAATA
192 CGTCTTGAATACTTTAAGGAACC
* * * * **
15115 AAAGTTATAAAATAACTCATAAAAGTTTGTCAAGTTCGGAAGTTC-AGCCGAGAACCTTGA-ACG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAGA-G
* * * * *
15178 AAACAATTCTTACATAAATAAGCTTTTAATTCAAAGACCAAAAGTCGTTTACAAAATGACAATCT
64 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CT
* * * * * *
15243 ATTTAGAACAATTGATGCGATTTCCCGAGAATGGAATGTTTGAAAAATTGCTCGAAGGTATAGAT
128 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGAT
*
15308 CGTCTTGAATAATTTAAGGAACC
192 CGTCTTGAATACTTTAAGGAACC
* * * * *
15331 GAAATTA-AAGAAGAACTCGTAAATGTTTTTTAAGTTCGAAAGTTC-AGCTC-AGAACCTAGAGA
1 GAAGTTATAA-AAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA-C-CGAGAACCAAGAGA
* * * * *
15393 GAAACTATTATCACCTTAATAAGTTTTTTAATTCAAAGACCAAAAGTTTTTTTATAAAATGATAA
63 GAAACTATTCTCACCTAAATAAG-TTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAA
* * ** * *
15458 CTATTTAGACCAAATGATTCAATTTCCTAAGCTTGGAGTGTTCAGAAAATTGCTC----GAA-GG
126 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGG
*
15518 ATCTTCTTGAATACTTTAAGGAACC
190 ATCGTCTTGAATACTTTAAGGAACC
* * * * * * * *
15543 AAAATTATAAAAGAAGTCGTAAAAGTTTGTTAACTTTGAAAGTTC-AGCCTAGAACCAAAAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAGAGA
* *
15607 AACTATTCTCACCTAAATATGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * **
15672 TTAGACCAAATTATGCGATTTCTCGTGCATGGAATGTTCGGAAAATTGCTTAAAGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
*
15737 TCTTGAATACTTTAAGGAATC
194 TCTTGAATACTTTAAGGAACC
* * * * * *
15758 GAAGTTATGAAAGAACTCATAAAAGTTTTTCAGGTTCGTAAGTTCGACCGAGAACCAAAAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * *
15823 ACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTAAAAAATGACAACTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * *
15887 TTAGACCTAATGATGTGATTTTCCAAGCATGGACTGTACAGAAAATTGCTCGAAGGAATGG-TC-
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
*
15950 -CTTGAATACTTTAAGGAATC
194 TCTTGAATACTTTAAGGAACC
* * * *
15970 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTCCGAAAGTTCAACCGAGAACAAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
16035 ACAATTCTTACATAAATAA--CTTT--TT-------------TT-TTTACAAAATGAAAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * * *
16082 TTAGAACAATTGATGCGATTTCCCGAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
* * **
16147 TCTTGAATTCTTTATGGAAAA
194 TCTTGAATACTTTAAGGAACC
* * * *
16168 AAAGTT-TAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAATAGAGA
1 GAAGTTAT-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGA
* * * * *
16232 AACAATTCTCACCTAAATAAGGTTTTAATTGAAAAACCAAAAGTAGTTTACAAAATGACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * * *
16297 TTAAACCTAATGATGTGATTTTCCAAGCAT-GAATTGTACAATAAATTACT-AAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTCGA-AAATTGCTCGAAGGAATGGATC
* * *
16360 GTCTTGAATAATTTAATGAA-A
193 GTCTTGAATACTTTAAGGAACC
* * * * * *
16381 AAAATTATAAAAGAACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCGACTGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * ** * * *
16445 ACAATTCTCACATAAAGGATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAACTAAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * *
16510 TAGACCAAATGATGCGATTTCCCAAGCATGAAATGTTCGAAAAATTCCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGT
*
16575 CTTGCATACTTTAAGGAACC
195 CTTGAATACTTTAAGGAACC
* * * *
16595 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTC-AGAAGTTCGACCGTGAACAAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGA
* * *
16659 AATTATTCTCACCTAAATAAGTTTTTAATTCACAGA-CAAAAGTTGTTTACAAAATAACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
** *
16723 TTAGACCAAATGATGCGATTTCTAGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
*
16788 TCTTAAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * * *
16809 AAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGAAAGCTCGATCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * *
16874 ACAATTCACACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * * *
16939 TAGA-CATAATGATGCGATTTCCCAAGCATGGATTGTTTAGAAAATGGCTCGAAGGAATGGATTG
131 TAGACCA-AATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGGATCG
* **
17003 TCTTGAATGCTTTAAGGAATA
194 TCTTGAATACTTTAAGGAACC
* * * * *
17024 AAAGTTATAAAAGAACAACTCATAAACGTTTGTCAAGTTTGAAAGTTCGACCGAGAACCAAGAAA
1 GAAGTTATAAAAG---AACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGA
* * * * * * *
17089 TAAACAATTCTCTCATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGCCAATC
63 GAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-C
* * * ** *
17154 TATTTAGAACAAATGATACGATTTCTCGAGTGTGGAATGTTGGGAAAATTG-TGCGAAGGAATGG
127 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT-CGAAAATTGCT-CGAAGGAATGG
* *
17218 ATCATCTTGAATACTTTAAGGAATC
190 ATCGTCTTGAATACTTTAAGGAACC
* * * * * * * **
17243 GAAGTCA-ACAAAGAACTCTTAAATGTTTGTCAAGTTTGAAAGTTTTG-TCGAGAACCTAGATTG
1 GAAGTTATA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG-TTCGACCGAGAACCAAGAGAG
* * * *
17306 GAACTATTATCACCTAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTA
64 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * * * * *
17371 TTT-GAACCAAATGATACAATTTCCAGAGCATGGATTGTTCGAAAAATGGTTCGGAGGAATGGAT
129 TTTAG-ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGAT
**
17435 CGTCTTGAATACTTTAAGGAATA
192 CGTCTTGAATACTTTAAGGAACC
* * * * ** * *
17458 AAAGTTATAAAAGAACTCATAAAAGTTTATCAAGTTCGGAAGTTCGGTCGAGAACCTAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * *
17523 ACAATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * * * * * * * * * *
17588 TTAGAACAACTTATGTGATTTCCTGAGAATGGGATGTTCGAAAAGTTGTTCAAAGGTATAGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA-TTGCTCGAAGGAATGGATCG
* * * *
17653 TGTTAAATAATTAAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * * * * *
17674 GAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGCCCAAAACCTAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
17739 ACTATTATCACCTAAATAAGTTTTTTAATTCAAAGACCGAAAGTTTTTTATAAAATGAGAACTAT
66 ACTATTCTCACCTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * *
17804 TTAGACCAAATGATGCGATTTCCTGAGCTTGGAATGTTCAGAAAATTGCTC----GAA-GGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
*
17864 TCTTGAATACTTTAAGGAATC
194 TCTTGAATACTTTAAGGAACC
* * * * * *
17885 TAAGTTATAAAAGAAGTCGTAAAAGTTTGTTAACTTCGAAAGTTC-AGCCTAGAACCAAGAGAGT
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAGAGA
* * *
17949 AACTATTCTCACCTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTCACAAAATTACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * *
18014 TCAGACCAAATTG-TGCGATTTCTCGAGCATGGAATGTTCGGGAAATTGCTCAAAGGAATGGATC
130 TTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATC
* *
18078 GTCTTGAATACTTTACGGAATC
193 GTCTTGAATACTTTAAGGAACC
* * * * * * * *
18100 GTAGTTATGAATGAACTCGTAAAGGTTTTTCAGGTTCGTAAGTTCTACCGAGAACCAA-AGGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGA-GAGA
* * * * *
18164 AACAATTCTCACCTAAATAAG-TTTTAATTGAAAAACCAAAAATAGTTTACAAAATGACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * *
18228 TTAGACCTAATGATGTGATTTTCCAAGCATGGACTGTATAGAAAATTGCTCAAAGGAATGGATTG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TCGAAAATTGCTCGAAGGAATGGATCG
* *
18293 TCTTGAATACTTTAATGAACA
194 TCTTGAATACTTTAAGGAACC
* * * * * *
18314 AAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCAACCGAGAACCAATAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* ** * * *
18378 ACAATTCTCAGATAAAGAATTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* ** * * * *
18443 TAGACCAAATGATGAGATTTCCTAAGCTTGGAATGTTCAGAAAATTGCTGGAAGGAATGGTTCAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
*
18508 CTTGAATACTTTAAAGAACC
195 CTTGAATACTTTAAGGAACC
* * * *
18528 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGGCCTAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * *
18593 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACATAATGGCAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * ** * *
18658 TAGACTAAATGATGTGATTTCTAGAGCATGGAATGTTCTTAAAATTGCT-AAAGCGAATGGATCG
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAG-GAATGGATCG
* *
18722 TCTTGAATAGTTTAAGGAATC
194 TCTTGAATACTTTAAGGAACC
* * *
18743 AAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTC-AGAAGTTCGACCGAGAACCAAAAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGA
* * * *
18807 AA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTAAAAAATAACAACAA
65 AACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * * * * *
18871 TTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTATGGAAAATTGCTTGAAAGAATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TCGAAAATTGCTCGAAGGAATGGATC
* *
18936 GTCTTGAATACTTTAATGAACA
193 GTCTTGAATACTTTAAGGAACC
* * * *
18958 AAAGTTATAAAAGAACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCGATCGAGAA-CATAGAAAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCA-AGAGAGA
* * *
19022 AA-TAATTCTAACATAAATAA-TTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTA
65 AACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
** * *
19066 TTTAGAATAATTGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATC
* * *
19131 GTCTTGAATTCTTTATGGAACA
193 GTCTTGAATACTTTAAGGAACC
* * * ** *
19153 GAAGTTA-AAAAGGTACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGGCTAAGAACCAATAGAGA
1 GAAGTTATAAAA-GAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGA
** * * *
19217 AACTATGATCACCTAAATAAGTTTTTAATTCAATGTCCAAAAGTTGTTTATAAAATGACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * **
19282 TTAGACCAAGTGAAT-CGATTTCCTGAGCTTGGAATGTTTCGAGGATTGCTCGAAGGAATGGATC
130 TTAGACCAAATG-ATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGGATC
* *
19346 ATCTTGAATACTTTAAGGAATC
193 GTCTTGAATACTTTAAGGAACC
* * * * * * * ** * *
19368 AAAGTTATAAAATAACTTGTAAAAGTTTGACAACTTTGAAAGTTTGGGCGTGAACCAAGAGAGGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* *
19433 ACTATTGTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * ** **
19498 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTG-TTAAAGGAATGGATCAC
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGT
*
19562 CTTGAATACTTTTAAGGAATC
195 CTTGAATAC-TTTAAGGAACC
* * * * * * * * *
19583 GAAGTTATGAAAGAGCTCGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * *
19648 ACAATTCTCACCTAAATAAGTTTATAATTGGAAA-ACCAAAAGTAGTTTACAAAATAACAACCAT
66 ACTATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * * *
19712 TTAGACCTAATGATGTGATTTCCCAAGCATAGACTGTACAAAAAATTGGTCGAAGGAATGGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
*
19777 TCTTGAATACTTTAATGAA-C
194 TCTTGAATACTTTAAGGAACC
* * * * * * *
19797 GAAAGTTATAAAAGCACTTGTAAAAGTTTTTCAACTT-TAAAGTTCGACCAAGAACCAAGAAAGA
1 G-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGA
* ** * ** *
19861 AACAATTCTCAGATAAA-GAGTTTTTTTAATTCAAAGATAAAAAGTTGTTTACAAAAGTTCGGCC
65 AACTATTCTCACCTAAATAAG--TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA--T--G-A
* * * * ** * * **** ** * * *
19925 CAAAGGCAACTGAGA-AATAATTCTCACCTAAATTAGTTTTTA--ATTCAAAG-ACCAAAACTAT
123 C-AA--CTATTTAGACCA-AATGAT--GC--GATT--TCCCGAGCATGGAATGTTCGAAAA-T-T
* * * * ** **
19986 -TTAGACGAAAT-GATGCGAT-TT---T-C-TCGAGG-ATT
176 GCTCGAAGGAATGGAT-CG-TCTTGAATACTTTAAGGAACC
* *** * * * ** * * * *
20018 GAATGTTCAAAAAATTGCTCG--AAGGACTGGATCATCTT-GAATACTT-TA-AG-GAATCGAAG
1 GAA-GTT-ATAAAAGAACTCGTAAAAG-TTTG-TCAAGTTCGAA-AGTTCGACCGAGAA-CCAAG
* * *** ** *** ** * ** * **
20077 TTATGAAAGAACTAGTAAAAGTTTTTTTGGTTTGTAAGTTTGGCCGAGAACCAAAAG-AG-AAAC
60 --A-GAGA-AACTATTCTCACCTAAATAAGTTTTTAA--TT--CAAAG-ACCAAAAGTTGTTTAC
** * * ** ** * * * ** * *
20140 AATTCTCACCTAAATAAGTTTTTAATTGAAAAAACAAAAG-TATTT-AC-AAAATGACAACTATT
116 AA-AATGA-C-AACT-A---TTT-A--GACCAAA-TGATGCGATTTCCCGAGCATG-GAA-T-GT
* * * * * * *
20202 TAGACCTAATGATGTGATTTCCCAA-GCATGGA-CTGTAC--GAAAAATTGCTCGAAGGAA-T
167 TCGA---AA--AT-TG--CT-CGAAGGAATGGATC-GT-CTTGAATACTT--T--AAGGAACC
* * * *
20260 GAATCGTCTTAAATACTTTAAGAAACAAAT-GTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTC
1 GAA--G--TT--ATA---AAAG-AAC---TCG---TAAAAG--TTTGT--CA--------AGTTC
* * * * * *
20324 GGAAGTTCGATCGAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAACAC
38 GAAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAA-GTTTTTAATTCAAAGAC
* * ** * *
20388 CAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTTTTGCGATTTCCCAAGTATGGAATG
102 CAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* ** * * * *
20453 TTTGAAAATTGCTTAAAGGAATGGACCGTGTTGAATTCTTTAA--AACA
166 TTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * *
20500 AAAGTTATAAAAGAACTTGTAAAAGTTT-TCCAAGTT-TAATA-TTCGATCGAGAACCAAGAAAG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGT-CAAGTTCGAA-AGTTCGACCGAGAACCAAGAGAG
* * * * * *
20562 AAACAATTCTCACATAAAGAATTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATCACAACTA
64 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
** * *
20627 TTTAGACCAAATGATGCGATTTCCTAAGCATGTAATGTTCGAAAAACTGCTCGAAGGAATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATC
* * *
20692 GTCTTAAATACTTTAAGGATCA
193 GTCTTGAATACTTTAAGGAACC
* * * *
20714 AAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTTGGCCGAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * *
20779 A-TAATTCTCACATAAATAACATTTTT-ATTCAAAGAACAAAAGTTGTTTACAAAATGACAATCT
66 ACT-ATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CT
* * * * * * *
20842 ATTTGGAACAATTTATGCGATTTTCCAAGCATAGAATGTTCGAAAAATTGCTCGAAGGAATGG-T
128 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGAT
* * *
20906 -G--TTGAATACTTTATGGAGCT
192 CGTCTTGAATACTTTAAGGAACC
* * * * * * *
20926 GAAGTTA-AAAAAAAGCTCGTAAAAGTTTGTCAACTTCAAAAGTTTGGCTGAGAACCAAGAGAGG
1 GAAGTTATAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGA
* * * * * * *
20990 AACTATTATCACTTAAATATGGTTTTAATACAAAGACCAAAAGTTGTTTATAAAATGAGAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
** * * *
21055 TTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTTGAAAAATTG-TGCGAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCT-CGAAGGAATGGATC
* * * *
21119 GTTTTAAATACTTTAATGAACT
193 GTCTTGAATACTTTAAGGAACC
* * * * ** * *
21141 GATGTTATAGAAGAATTCGTAAAAGTTTCTCAAGTTCGGTAGTTCGACTGGGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* *
21206 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* *
21271 TAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGT
* * *
21336 CTTGAATACTTTATGAAACA
195 CTTGAATACTTTAAGGAACC
* * * * *
21356 AAAGTT-T----G---TC----AAGTTCGT-AAGTTCG--A---CTA---AGAACAAAGA-AAAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * ** * *
21399 ACAATTCTCTCATAAATAACATTTTAATTTC-AAG-CACATAAGTTTTTTTTACAAAATGACAAT
66 ACTATTCTCACCTAAATAAGTTTTTAA-TTCAAAGAC-CAAAAG--TTGTTTACAAAATGACAA-
* * * * *
21462 CTATTTAGAACAATTGATGCGATTTCCCGAACATGGAATGTTCAAAAAATTGCACGAAGGAATGG
126 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGG
* *
21527 ATTGTCTTGAATACTTTAAGGAGCC
190 ATCGTCTTGAATACTTTAAGGAACC
* * * * *
21552 GAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTTGGCCGAGAACCAAGAGTGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * *
21617 ACTATTATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAATGGCAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * *
21682 TAGACCAAATGATGCGATTTCCTGAGCAAGGAATGTTCATAAAATTGCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
* * * *
21747 CTTGAAAAATTTATGGAATC
195 CTTGAATACTTTAAGGAACC
* * * * ** *
21767 G-A-TTATAAAAGAACTCATAAAAGTTTGTCAACTTTGGAAGTTCGACTTTA-AACAAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC-CGAGAACCAAGAGAGA
* *
21829 AATTATTCTCACCTAAATAAGTTTTTAATTCACAGA-CAAAAGTTGTTTACAAAATGACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
** * *
21893 TTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTTGAAAAATTGCTTGAAGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
* * *
21958 CCTTAAATACTTGAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * ** *
21979 -AATGTTATAAAAGAACTTGTAAAATTTTGACAAGTTCAAAAGTTCGATAGAGAACCAAGAAAGA
1 GAA-GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGA
* ** ** * * * * *
22043 AACAATTAGCAGATAAATAACTTTTAAATTTAAAAACCAAAAGTTGTTTACAAAATGACAAATAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * *
22108 TTAGACCAAATGATTCGATTTCCCAAGTATGGAATGTTCAGAAATTTGCTTGAAGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
*
22173 TCTTGAATACTTT-ATG----
194 TCTTGAATACTTTAAGGAACC
* * * * * * * *
22189 G-A---ATAAAAG--TTTGT-CAAGTTCG-AAAGTTCG--A---CCA-AGA--ACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * * *
22238 ACAATTCTCACATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAATGACAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * *
22303 TTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGCGAAGGAATGGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
22363 TCTTGAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * * * * * * *
22384 CAAGTTAAAAAAGAACTTGTAAATGTTTTTCAAGTT-TAAAGTTCGGCCTAGATCCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
22448 ACAATTCTCACATAAACAATTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * ** * *
22513 TAGACCAAACGATACGATTTCCAAAGCATGAAATGTTTAGAAAATTGCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGGATCGT
* **** *
22578 GTTGAATACTTTCTTAAACT
195 CTTGAATACTTTAAGGAACC
* * * * * *
22598 GAAGTTAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTG-CTGAGAACCAAGAGAGG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG-TTCGACCGAGAACCAAGAGAGA
* * * * * *
22662 AACTATTATCACTTAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTATAAAATGAGAAC-AT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
** * *
22726 TTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTCGAAAAATTG-TGCGAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCT-CGAAGGAATGGATC
* * *
22790 GTCTTAAATA-TTTAATGAACT
193 GTCTTGAATACTTTAAGGAACC
* * * * * *
22811 GATGTTATAGAAGAATTCATAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* *
22876 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * * *
22941 TAGACCAAATGATTCGATTTCCCAAGTATGGAATGTTCAGAAATTTGCTTGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
*
23006 CTTGAATACTTT-ATG----
195 CTTGAATACTTTAAGGAACC
* * * * * * * *
23021 G-A---ATAAAAG--TTTGT-CAAGTTCG-AAAGTTCG--A---CCA-AGA--ACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * *
23070 ACAATTCTCACATAAATAACTTTTTAATTTAAAGGCCAAAAGTTGTTTACAAAATGACAATTTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
*
23135 TTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGT-GAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGC-TCGAAGGAATGGATC
*
23194 ATCTTGAATACTTTAAGGAACC
193 GTCTTGAATACTTTAAGGAACC
* * * * ** ** * *
23216 CAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTCGAAAGTTTTACCGAGAACTTAGAGGGGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * *
23281 ACTATTATCACCTAATTAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* ** * * * * * * *
23346 T-GAACGAAATGATATGATTTCCAGAGTATGGATTGTTCGAAAAATGGATCGGAGGAATGGTTCG
131 TAG-ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
*** *
23410 TCTTGAATACTTTAACTCA-T
194 TCTTGAATACTTTAAGGAACC
* ** * * * * * *
23430 AAAACTATAAAAGAACTCATAAAAGTTTGTCACGTTCAAAAGTTAGACCGAGAACCTAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
23495 ACAATTCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * * * * * * * * * *
23560 TTAGAACAATTGATGCGACTTCCCAAGAATTGAATGTTTGAAAAATTGCTCAAAGGTATAGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
*
23625 TCTTGAATAATTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * * * *
23646 AAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGATCCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
23711 ACTATTATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTAAAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * *
23776 TAGACCAAATGATGCGATTTCCTGACCAAGGAATGTTCAGAAAATTGCTCGAAGGAATGAATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
* * *
23841 CTTGAATAATTTATGGAATC
195 CTTGAATACTTTAAGGAACC
* * * * *** *
23861 GATGTTATAACAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTCGACTTTGAACAAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
*
23926 ATTATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* ** *
23990 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTAAAGGAATGGATCGC
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGT
* *
24055 CTTAAATACTTTAAGGAACA
195 CTTGAATACTTTAAGGAACC
* * * * * * *
24075 AAAGTTATAAAAGAACTTGTAAAATTTTGTCAAGTCCAAAAGTTCGATCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * * * *
24140 ACAATTATCACATAAATAACTTTTAAATTTAAAGACCAAAAGTTTTTTACAAAATGACAAATATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* ** * *
24205 TAGACCAAATGATTCGATTTCCTAAGCATGGAATGTTCAAAAAATTACTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
* *
24270 CTTGAATAATTT-ATG----
195 CTTGAATACTTTAAGGAACC
* * * *** * * *
24285 G-A---ATAAAAG--TTTGT-CAAG-TTCAAAAGTTCG--A---CCA-AGA--ACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
24334 ACAATTCTCACATAAAT-AGCTTTTTAATTTAAAGGA-CAAAAGCCT-TTTACAAAATGATAATC
66 ACTATTCTCACCTAAATAAG-TTTTTAATTCAAA-GACCAAAAG-TTGTTTACAAAATGACAA-C
* * * * * * *
24396 TATTTAGAACAATTGATGCAATTTCCCGAACAAGGAA-GCTTCGAGTAATTGCACGAAGGAATGG
127 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGA-AAATTGCTCGAAGGAATGG
*
24460 ATCGTCTTTG-ATACTTTATGGAACC
190 ATCGTC-TTGAATACTTTAAGGAACC
* * * * *
24485 GAAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTC-AGAAGTTCGGCCGAGAACCAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGA
* * * * * * * *
24549 AACTATTATCTCCTAAA-AAGTTTTTAATTCAAAAATCGAATGTTGTTTATAAAATGACAACTAC
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * *
24613 TTAGACCAAATGATGTGATTTCCTGAGCACGAAATATTTAGAAAATTGCTCGAAGGAATAGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAAT-GTTCGAAAATTGCTCGAAGGAATGGATCG
* * * *
24678 ACTTGAATAATTTATGGACCC
194 TCTTGAATACTTTAAGGAACC
* * * *
24699 GATGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAAAAGTTCGACCGTGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
*
24764 ATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * *
24829 TAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAATT-TTCCAGAAGGAATGGATCG
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCT-C-GAAGGAATGGATCG
*
24893 TCTTAAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * ** *
24914 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGCTCGGTCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * *
24979 ACAATTCACACCTAAATAA-TATTTTAATTCAAAGACCAAAAGTAGTCTACAAAATGACAACTAT
66 ACTATTCTCACCTAAATAAGT-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * *
25043 TT-GA-CATAAAGATGCAATTTCCCAAGCATGGACTGTTCGAAGAATGGCTCGAAGGAATGGATT
130 TTAGACCA-AATGATGCGATTTCCCGAGCATGGAATGTTCGAA-AATTGCTCGAAGGAATGGATC
* **
25106 GTCTTGAATGCTTTAAGGAATA
193 GTCTTGAATACTTTAAGGAACC
* * * *
25128 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * * *
25193 ACAATTCTCACATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAATGACAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * *
25258 TTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGCGAAGGAATGGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
25318 TCTTGAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * * * * * * *
25339 CAAGTTAAAAAAGAACTTGTAAATGTTTTTCAAGTT-TAAAGTTCGGCCTAGATCCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
25403 ACAATTCTCACATAAACAATTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * ** * *
25468 TAGACCAAACGATACGATTTCCAAAGCATGAAATGTTTAGAAAATTGCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGGATCGT
* **** *
25533 GTTGAATACTTTCTTAAACT
195 CTTGAATACTTTAAGGAACC
* * * * * *
25553 GAAGTTAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTG-CTGAGAACCAAGAGAGG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAG-TTCGACCGAGAACCAAGAGAGA
* * * * * *
25617 AACTATTATCACTTAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTATAAAATGAGAAC-AT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
** * *
25681 TTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTCGAAAAATTG-TGCGAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCT-CGAAGGAATGGATC
* * *
25745 GTCTTAAATA-TTTAATGAACT
193 GTCTTGAATACTTTAAGGAACC
* * * * * *
25766 GATGTTATAGAAGAATTCATAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* *
25831 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * *
25896 TAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCGAGAAATTGCTCGAACGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAATTGCTCGAAGGAATGGATCGT
* *
25961 CTTGAATACTTTATGGAACA
195 CTTGAATACTTTAAGGAACC
* * * * ** ** *
25981 AAAGTT-T----G---TC----AAGTTCG-GAAGTTCG--ACTGAGAACAAAGAA--AA-A-A-C
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG-ACCGAGAACCAAGAGAGA
** *** * ** * * * *
26026 AA-TTCTCTCATAAATAACATTTTAATTTAA---AGA-A-CATAAGTTTTTTTTTACAAAATCAC
65 AACTATTCTCACCTA-AATAAGTT--TTTAATTCAAAGACCAAAAG---TTGTTTACAAAATGAC
* * * *
26085 AATCTATTTAGAACAATTGATGCGATTTCCCGAACATGGAATGTTCGAAAAATTGCACGAAGGAA
124 AA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAA
* *
26150 TGGATCGTCTTGAATACTTTAGGGAGCC
187 TGGATCGTCTTGAATACTTTAAGGAACC
* * * * *
26178 GAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
26243 ACTATTGTCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * *
26308 TAGACCAAATGATGCGATTTCCTGAGCAAGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
* *
26373 CTTGAATAATTTATGGAACC
195 CTTGAATACTTTAAGGAACC
* * * ** *
26393 GATGTTATAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTCGACTTTA-AACAAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAC-CGAGAACCAAGAGAGA
*
26457 AATTATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAATGACAACTAT
65 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * *
26521 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATTG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCG
* *
26586 CCTTAAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * ** * *
26607 AAAGTTATAAAAGAACTTGTAAATTTTTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * * *
26672 ACAATTATCACATAAATAACTTTTAAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAATATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
** * *
26737 TAGACCAAATGATTTGATTTCTCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
*
26802 CTTGAATACTTT-----A-T
195 CTTGAATACTTTAAGGAACC
* * * * * * * * *
26816 GAA---ATAAAAG--TTTGT-CAAGTTCG-AAAGTTCG--A---CCA-AGA--ACTAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * *
26866 ACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAATGACAATCTA
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAA-CTA
* * ** * * * * *
26930 TTTAGAACAATTGATGTAATTTCTCGAACATGGAAGGTTCGAGTAATTGCACGAAGGAATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAATTGCTCGAAGGAATGGATC
* *
26995 GTCTTCG-ATACTTTATGGAATC
193 GTCTT-GAATACTTTAAGGAACC
* * ** * * *
27017 GAAGTTAAAAAATAGTTCATAAAAGTTTGTTAACTTC-ATAAGTTC-AGCCGAGAACCAAGAGAG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGA-CCGAGAACCAAGAGAG
** * * * *
27080 AAACTATTAC-CACCTAAATAAGTTTTTAATTTGAAGAACAAATGTTCTTTATAAAATGACAACT
64 AAACTATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC-
** * * *
27144 TATTTAGACCAAATGATGCGATTT-ATGAGCATAGAATGTTCAAAAAAATTGATCGAAGGAATGG
127 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC--GAAAATTGCTCGAAGGAATGG
* * *
27208 ATTGTCTTGAATAATTTATGGAACC
190 ATCGTCTTGAATACTTTAAGGAACC
* * * * * ** *
27233 GGAGTTATAAAAGAGCTCGTAAAAGTTTGTCAACTTCGGATGTTCGGTCGTGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
*
27298 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * * *
27363 TAGACGAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAGTGGATCGT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
* * * *
27428 CCTAAATACTTTAATGAACT
195 CTTGAATACTTTAAGGAACC
27448 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGA-A-AA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * ** ** * * *
27511 AATAATTCTCACATAAATAACATTTTAATTTGAAGAACATAAGTTTTTTTTACAAAATGACAAGC
66 ACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAA-C
* * * * *
27576 TATTTAGAACAATTGATGCGATTTCCCGAACATGGAATGTTCGAAAAATTGCACAAAGGAATGGA
127 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGA
* * *
27641 TCATCTTAAATAATTTAAGGAACC
191 TCGTCTTGAATACTTTAAGGAACC
* * * * * * *
27665 GAAGTTAAAAAAGAACTTGTAAAAGTTTTTGAAGTTCAAAAGTTCGGCCGAGAACCAAAAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * *
27730 ACTATTATCACCTAAA-AAGTTTTTAATTCAAAGATCGAATGTTGTTTATAAAATGACAACTACT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * * * * * * * *
27794 TAGACCGAATGATGTGATTTCCTGAGCACGAAATATTCAAAAAATTGCTCGAAGGAATAGATCGA
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGT
* * *
27859 CTTGAATA-ATTATGGACCC
195 CTTGAATACTTTAAGGAACC
* * * * * *
27878 GATGTTATAAAAGAATTCGTAAAAGTTTGTCAACTTCGGAAGTTTGACCGTGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
*
27943 ATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* * *
28008 TAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAATT-TTCCTGAAGGAATGGATCG
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCT-C-GAAGGAATGGATCG
*
28072 TCTTAAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * ** *
28093 GAAGTTATAAAAGAACTCGTAAATGTTTGTCAAGTTCGAAATTTCGGTCGAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * *
28158 GCAATTCACACCTAAGTAA-TATTTTAATTCAAAGACCAAAAGTAGTCTACAAAATGACAACTAT
66 ACTATTCTCACCTAAATAAGT-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * *
28222 TT-GA-CATAATGATGC-AGTTTCCCAAGCATGGACTGTTTGAAAAATGGCTCGAAGGAATGGAT
130 TTAGACCA-AATGATGCGA-TTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGAT
* * **
28284 TGTCTTGAATGCTTTAAGGAATA
192 CGTCTTGAATACTTTAAGGAACC
* * * * *
28307 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
* * * * * * *
28372 ACAATTCTCACATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAATGACAATCTAT
66 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * *
28437 TTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCG
28497 TCTTGAATACTTTAAGGAACC
194 TCTTGAATACTTTAAGGAACC
* * * * **
28518 CAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTC-AGAAGTTCTG-CCGAGAACTTAGAGAG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTC-GACCGAGAACCAAGAGAG
* * * *
28581 GAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTA
64 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* ** * * * * *
28646 TTT-GAACGAAATGATATGATTTCCAGAGCATGGATTATTCGGAAAATGGCTCGGAGGAATGGAT
129 TTTAG-ACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGAT
*
28710 CGTCTTGAATACTTTAAGGAA-T
192 CGTCTTGAATACTTTAAGGAACC
* ** * * *
28732 AAAACTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGACCGAAAACCTAGA-AGGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGA-GA
* * * * *
28796 AACAATTCTTACATAAATAAGTTTTT-ATTCCAAAGACCAAAAGTTGTTTAGAAAACGACAATCT
65 AACTATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAA-CT
* * * * * * * *
28860 ATTTAGAACAATTGATGCGATTTCCCAAGAATTGAATGTTTGAAAAATTGCTCGAAGGTATAGAT
128 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGAT
* *
28925 CGTCTTGAATAATTTAAGGAATC
192 CGTCTTGAATACTTTAAGGAACC
* * * * * * *
28948 GAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGGAAGTTCGGTCC-A-AAACATAGAGAG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC-GACCGAGAACCA-AGAGAG
* * * *
29011 AAACTATTATCAACTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTGTATAAAATGACAACTA
64 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
** * * * * * * *
29076 TTTAGACCAACCGAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGGAATGTATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATC
*
29141 GTCTTGAATACTTTAAGGAACT
193 GTCTTGAATACTTTAAGGAACC
* *
29163 GAAGTTATAAAATAAGTCGTAAAAGT
1 GAAGTTATAAAAGAACTCGTAAAAGT
29189 ATGGAATGTT
Statistics
Matches: 12020, Mismatches: 2323, Indels: 1180
0.77 0.15 0.08
Matches are distributed among these distances:
189 1 0.00
190 109 0.01
191 5 0.00
192 3 0.00
193 37 0.00
194 296 0.02
195 364 0.03
196 130 0.01
197 94 0.01
198 97 0.01
199 14 0.00
200 16 0.00
201 18 0.00
202 53 0.00
203 46 0.00
204 28 0.00
205 6 0.00
206 32 0.00
207 19 0.00
208 25 0.00
209 39 0.00
210 314 0.03
211 535 0.04
212 634 0.05
213 601 0.05
214 2513 0.21
215 4026 0.33
216 1105 0.09
217 288 0.02
218 159 0.01
219 87 0.01
220 12 0.00
221 16 0.00
222 19 0.00
223 20 0.00
224 14 0.00
225 24 0.00
226 18 0.00
227 16 0.00
228 5 0.00
229 12 0.00
230 7 0.00
231 5 0.00
232 1 0.00
233 2 0.00
234 8 0.00
235 3 0.00
236 2 0.00
238 2 0.00
239 2 0.00
240 2 0.00
241 2 0.00
242 7 0.00
243 5 0.00
244 9 0.00
245 8 0.00
246 4 0.00
247 2 0.00
249 4 0.00
250 1 0.00
252 6 0.00
253 11 0.00
254 3 0.00
255 5 0.00
256 3 0.00
257 4 0.00
258 4 0.00
259 4 0.00
260 10 0.00
261 5 0.00
262 4 0.00
263 2 0.00
265 9 0.00
266 7 0.00
267 6 0.00
268 3 0.00
269 5 0.00
270 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (214 bp):
GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA
ACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTC
TTGAATACTTTAAGGAACC
Found at i:14930 original size:429 final size:429
Alignment explanation
Indices: 14030--48720 Score: 15324
Period size: 429 Copynumber: 80.2 Consensus size: 429
14020 GATCATATCA
* * * * * **
14030 TTTAACGAATAGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGTTGAGAA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * * *
14095 CCAAGAGAGAAACTATTATTACCTAAATAAGTTTTTAATTCAAAGA-TAGAATGTTGTTTATAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAA
* *** * *
14159 ATGACAACTATTTAGACCAAATGATGTGATTTCTTGAGCACGGAATGTTC-AGAAAATTGCTCAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGA
* * * *
14223 AGGAATGGATCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * **
14288 ACTTCGGAAGTTCAACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * *
14353 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGCA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* *
14418 ATG-TTCGAAAAATTGCTTGAAGGAATGGATCGTCTTAAATAC
388 ATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
14460 TTTACGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGGTCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
14525 CCAAGAAAGAAACAATTCACACCTAAATAAGTTTTTAATTCAAAGATCAAAAGTGGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * *
14590 TGACAACTATTTAG-CCATAATGATGCAATTTCCCAAGCATGG-ACGTTCGGAAAATGGCTCGAA
130 TGACAACTATTTAGACCA-AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * ** * * * *
14653 GGAATGGATTGTATTGAATGCTTTAAGGAATAAAAGATATTAAACAACTCGTAAAAATTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * *
14718 GTTCAAAAGTTCGACCGAAAACCAAGA-AGAAACAATTCTCACATAAATAACTTTTTAATTTAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * * * ** *
14782 GACAAAAAGTTGATTACAAAATGCCAATCTATTTAGAACAAATGATAAGATTTCCCTAGCATGGA
324 GACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* * *
14847 ATGTTTGGAAAAATGAGT-GAAGGAATGGATCATCTTGAATAC
388 ATGTTTCGAAAAATG-CTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
14889 TTTAAGGAATCGAAGTCAACAAAGAACTCTTAAATGTTTGTCAAGTTCGAAAGTTCTGTCGAGAA
1 TTTAAGGAATCGAAGTTAA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * ** * * * * *
14954 CCTAGAGAGGTACTATTATCACCTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTATAATA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * * * * *
15019 TGACAACTATTT-GAAGCAAATGATACGATTTCCAAAGCATAGATTGTTTGGAAAATGGCTGGGA
130 TGACAACTATTTAG-ACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* ** * *
15083 GGAATGGATCGTCTTGAATACTTTAAGAAATAAAAGTTATAAAATAACTCATAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* ** * * *
15148 GTTCGGAAGTTC-AGCCGAGAACCTTGA-ACGAAACAATTCTTACATAAATAAGCTTTTAATTCA
259 GTTCGAAAGTTCGA-CCGAGAACCAAGAGA-GAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * * *
15211 AAGACCAAAAGTCGTTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAGAATG
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* * *
15276 GAATGTTT-GAAAAATTGCTCGAAGGTATAGATCGTCTTGAATAA
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
15320 TTTAAGGAACCGAAATTAAAGAAGAACTCGTAAATGTTTTTTAAGTTCGAAAGTTCAGCTC-AGA
1 TTTAAGGAATCGAAGTTAAA-AAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC-CGAGA
* * * * * * *
15384 ACCTAGAGAGAAACTATTATCACCTTAATAAGTTTTTTAATTCAAAGACCAAAAGTTTTTTTATA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAG-TTTTTAATTCAAAGACCAAAAG-TTGTTTACA
* * * * * *
15449 AAATGATAACTATTTAGACCAAATGATTCAATTTCCTAAGCTTGGAGTGTTC-AGAAAATTGCTC
127 AAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTC
* * *
15513 ----GAA-GGATCTTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAAGTCGTAAAAGTTTGT
191 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * *
15573 TAACTTTGAAAGTTC-AGCCTAGAACCAAAAGAGAAACTATTCTCACCTAAATATGTTTTTAATT
256 CAAGTTCGAAAGTTCGA-CCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * * **
15637 CAAAGACCAAAAGTTGTTTACAAAATTACAACTATTTAGACCAAATTATGCGATTTCTCGTGCAT
320 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCAT
* **
15702 GGAATG-TTCGGAAAATTGCTTAAAGGAATGGATCGTCTTGAATAC
385 GGAATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
15747 TTTAAGGAATCGAAGTTATGAAAGAACTCATAAAAGTTTTTCAGGTTCGTAAGTTCGACCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
15812 CCAA-AAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTAAAA
65 CCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAA
* * * * *
15875 AATGACAACTATTTAGACCTAATGATGTGATTTTCCAAGCATGGACTGTAC-AGAAAATTGCTCG
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCG
* *
15939 AAGGAATGG-TC--CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * * * *
16001 AAGTCCGAAAGTTCAACCGAGAACAAAGAAAGAAACAATTCTTACATAAATAA--CTTT--TT--
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * * *
16060 -----------TT-TTTACAAAATGAAAATCTATTTAGAACAATTGATGCGATTTCCCGAGTATG
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* *
16113 GAATG-TTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATTC
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* *** *
16157 TTTATGGAAAAAAAGTTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAA
1 TTTAAGGAATCGAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * *
16222 CCAATAGAGAAACAATTCTCACCTAAATAAGGTTTTAATTGAAAAACCAAAAGTAGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * *
16287 TGACAACTATTTAAACCTAATGATGTGATTTTCCAAGCAT-GAATTGTAC-AATAAATTACT-AA
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA-TGTTCGAA-AAATTGCTCGA
* * * * *
16349 AGGAATGGATCGTCTTGAATAATTTAATGAA-AAAAATTATAAAAGAACTTGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * ** *
16413 AGTT-TAAAGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAGGATTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * *
16477 AGACCAAAAGTTGTTTACAAAATGATAACTAATTAGACCAAATGATGCGATTTCCCAAGCATGAA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* *
16542 ATG-TTCGAAAAATTCCTCGAAGGAATGGATCGTCTTGCATAC
388 ATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
16584 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTC-AGAAGTTCGACCGTGA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGA
* * ** *
16648 ACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCACAGA-CAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
16712 ATAACAACTATTTAGACCAAATGATGCGATTT-CTAGAGCATGGAATGTTCGAAAAATTGCTTGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCGA
* *
16776 AGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * *
16841 AGTTTGAAAGCTCGATCGAGAACCAAGAAAGAAACAATTCACACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
*
16906 AGACCAAAAGTAGTTTACAAAATGACAACTATTTAGA-CATAATGATGCGATTTCCCAAGCATGG
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AATGATGCGATTTCCCAAGCATGG
* * * *
16970 ATTGTTTAG-AAAATGGCTCGAAGGAATGGATTGTCTTGAATGC
387 AATGTTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATAC
** * * * *
17013 TTTAAGGAATAAAAGTTATAAAAGAACAACTCATAAACGTTTGTCAAGTTTGAAAGTTCGACCGA
1 TTTAAGGAATCGAAGTTA-AAAAG---AACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGA
* * * * *
17078 GAACCAAGAAATAAACAATTCTCTCATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACA
62 GAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * ** * *
17143 AAATGCCAATCTATTTAGAACAAATGATACGATTTCTCGAGTGTGGAATGTTGGGAAAATTG-TG
127 AAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-
* * * * * *
17207 CGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTCA-ACAAAGAACTCTTAAATGTTT
190 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA-AAAGAACTCGTAAAAGTTT
* * * * ** * * * *
17271 GTCAAGTTTGAAAGTTTTG-TCGAGAACCTAGATTGGAACTATTATCACCTAAATAAGCTTTTAA
254 GTCAAGTTCGAAAG-TTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAA
* * *
17335 TTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTT-GAACCAAATGATACAATTT-CCAGA
318 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGCGATTTCCCA-A
* * *
17398 GCATGGATTG-TTCGAAAAATGGTTCGGAGGAATGGATCGTCTTGAATAC
381 GCATGGAATGTTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATAC
** * * * *
17447 TTTAAGGAATAAAAGTTATAAAAGAACTCATAAAAGTTTATCAAGTTCGGAAGTTCGGTCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
17512 CCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * ** * * * * *
17577 TGACAATCTATTTAGAACAACTTATGTGATTTCCTGAGAATGGGATGTTCGAAAAGTTGTTCAAA
130 TGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * * * * * *
17642 GGTATAGATCGTGTTAAATAATTAAAGGAACCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * *
17707 GTTCGAAAGTTCGGCCCAAAACCTAGAGAGAAACTATTATCACCTAAATAAGTTTTTTAATTCAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG-TTTTTAATTCAA
* * * * ** *
17772 AGACCGAAAGTTTTTTATAAAATGAGAACTATTTAGACCAAATGATGCGATTTCCTGAGCTTGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* *
17837 ATG-TTCAGAAAATTGCTC----GAA-GGATCATCTTGAATAC
388 ATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
17874 TTTAAGGAATCTAAGTTATAAAAGAAGTCGTAAAAGTTTGTTAACTTCGAAAGTTCAGCCTAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
17939 CCAAGAGAGTAACTATTCTCACCTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTCACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * ** *
18004 TTACAACTATTCAGACCAAATTG-TGCGATTTCTCGAGCATGGAATGTTCGGGAAATTGCTCAAA
130 TGACAACTATTTAGACCAAA-TGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * ** * * * * *
18068 GGAATGGATCGTCTTGAATACTTTACGGAATCGTAGTTATGAATGAACTCGTAAAGGTTTTTCAG
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * *
18133 GTTCGTAAGTTCTACCGAGAACCAA-AGGAGAAACAATTCTCACCTAAATAAG-TTTTAATTGAA
259 GTTCGAAAGTTCGACCGAGAACCAAGA-GAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * * *
18196 AAACCAAAAATAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTTCCAAGCATGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* * * * * *
18261 CTGTATAGAAAATTGCTCAAAGGAATGGATTGTCTTGAATAC
388 ATGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * **
18303 TTTAATGAA-CAAAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCAACCGAGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* ** * * *
18366 ACCAATAAAGAAACAATTCTCAGATAAAGAATTTTTTAATTCAAAGATCAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * *
18431 ATGACAACTATTTAGACCAAATGATGAGATTTCCTAAGCTTGGAATGTTC-AGAAAATTGCTGGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGA
* * * *
18495 AGGAATGGTTCATCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * *
18560 ACTTCGGAAGTTCGGCCTAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * * *
18625 AGAGCAAAAGTTGTTTACATAATGGCAACTATTTAGACTAAATGATGTGATTT-CTAGAGCATGG
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGG
* * * *
18689 AATG-TTCTTAAAATTGCT-AAAGCGAATGGATCGTCTTGAATAG
387 AATGTTTC-GAAAAATGCTCGAAG-GAATGGATCGTCTTGAATAC
* * *
18732 TTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTC-AGAAGTTCGACCGAGA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGA
* * *
18796 ACCAA-AAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTAAAA
64 ACCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * * * *
18860 AATAACAACAATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAATTGCTTG
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT-TCGAAAAATTGCTCG
* * * *
18924 AAAGAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTCGTTAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * *
18989 AAGTTCGAAAGTTCGATCGAGAA-CATAGAAAGAAATAATTCTAACATAAATAA-TTTTT--TT-
257 AAGTTCGAAAGTTCGACCGAGAACCA-AGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
* ** * * *
19049 ---TA-CAAAA--TG---AC--AAT-----CTATTTAGAATAATTGATGTGATTTCCCGAGCATG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
*
19098 GAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTC
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * **
19142 TTTATGGAA-CAGAAGTTAAAAAGGTACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGGCTAAGA
1 TTTAAGGAATC-GAAGTTAAAAA-GAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * ** * * *
19206 ACCAATAGAGAAACTATGATCACCTAAATAAGTTTTTAATTCAATGTCCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** * **
19271 ATGACAACTATTTAGACCAAGTGAAT-CGATTTCCTGAGCTTGGAATGTTTCG-AGGATTGCTCG
129 ATGACAACTATTTAGACCAAATG-ATGCGATTTCCCAAGCATGGAATG-TTCGAAAAATTGCTCG
* * * * *
19334 AAGGAATGGATCATCTTGAATACTTTAAGGAATCAAAGTTATAAAATAACTTGTAAAAGTTTGAC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * ** * * * * *
19399 AACTTTGAAAGTTTGGGCGTGAACCAAGAGAGGAACTATTGTCACCAAAATAAGTTTTTAATTCA
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* *
19464 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGG
322 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
** **
19529 AATGTTT-GAAAAATTG-TTAAAGGAATGGATCACCTTGAATAC
387 AATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
19571 TTTTAAGGAATCGAAGTTATGAAAGAGCTCGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGA
1 -TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * *
19636 ACCAA-AAGAGAAACAATTCTCACCTAAATAAGTTTATAATTGGAAA-ACCAAAAGTAGTTTACA
64 ACCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACA
* * * * * * * * *
19699 AAATAACAACCATTTAGACCTAATGATGTGATTTCCCAAGCATAGACTGTACAAAAAATTGGTCG
127 AAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG
* * * * * *
19764 AAGGAATGGATCATCTTGAATACTTTAATGAACGAAAGTTATAAAAGCACTTGTAAAAGTTTTTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * ** *
19829 AACTT-TAAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCAGATAAA-GAGTTTTTTTAATT
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG--TTTTTAATT
** * * * * * **
19892 CAAAGATAAAAAGTTGTTTACAAAAGTTCGGC--CCA--AAG-GCAACTGA-GAAATAATTCTCA
320 CAAAGACCAAAAGTTGTTTACAAAA--T-GACAACTATTTAGACCAAATGATG---CGATT-TC-
* ** * ** * * *
19951 CCTAA--ATTAGTTTTTAATTCAAAGACCAAAACTATTTAGACGAAAT-GATGCGAT-TT---T-
377 CC-AAGCA-TGGAATGT--TTC---GA--AAAA-T-GCTCGAAGGAATGGAT-CG-TCTTGAATA
20008 C
429 C
** * * * * * ** * *
20009 -TCGAGG-ATTGAATGTTCAAAAA-ATTGCTCG--AAGGACTGGATCATCTT-GAATACTTTAAG
1 TTTAAGGAATCGAA-GTT-AAAAAGA--ACTCGTAAAAG-TTTG-TCAAGTTCGAA-A-GTT-CG
* *** * * **** *** ** **
20068 GAATCGAAGTTATGAAAGAACTAGTAAA-AGTTTTTTTGGTTTGTAAGTTTGGCCGAGAACCAAA
57 G--CCG-AG--AACCAAGAA--AG-AAACA-ATTCTCACCTAAATAAGTTT---TTA-ATTC--A
** * *
20132 AGAGAAACAATTCTCACCTAAATAAGTT-TTTA-ATTGAAAAAACAAAAGTATTT--ACAAAATG
107 A-AG-----------ACC--AA-AAGTTGTTTACA---AAATGAC--AACTATTTAGACCAAATG
** * * * * ** *** **
20193 ACAACTATTTAGACCTA--AT-GATGTGATTTCCCAAGCATGGACTGTACGAAAAATTGCTCGAA
152 A-TGCGATTT--CCCAAGCATGGA-ATG--TTCGAAAAATTGCT-----------------CGAA
* * * *
20255 GGAATGAATCGTCTTAAATACTTTAA-GAAACAAATGTTTTAAAAGAACTCGTAAAAGTTTGTCA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAA-GTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * *
20319 AGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCA
* * * ** *
20383 AACACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTTTTGCGATTTCCCAAGTATG
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* ** * * *
20448 GAATGTTT-GAAAATTGCTTAAAGGAATGGACCGTGTTGAATTC
386 GAATGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * **
20491 TTTAA--AA-CAAAAGTTATAAAAGAACTTGTAAAAGTTT-TCCAAGTT-TAATA-TTCGATCGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGT-CAAGTTCGAA-AGTTCGGCCGA
* * * *
20550 GAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAATTCGAAGACCAAAAGTTGTTTACA
62 GAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * *
20615 AAATCACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGTAATGTTCGAAAAACTGCTCG
127 AAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG
* * * *
20680 AAGGAATGGATCGTCTTAAATACTTTAAGGATCAAAAGTTTTAAAAGAACTCGTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * *
20745 AAGTTCGAAAGTTTGGCCGAGAACCAAGAGAGAAATAATTCTCACATAAATAACATTTTT-ATTC
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTC
* * * * * *
20809 AAAGAACAAAAGTTGTTTACAAAATGACAATCTATTTGGAACAATTTATGCGATTTTCCAAGCAT
321 AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCAT
*
20874 AGAATG-TTCGAAAAATTGCTCGAAGGAATGG-T-G--TTGAATAC
385 GGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
20915 TTTATGG-AGCTGAAGTTAAAAAAAAGCTCGTAAAAGTTTGTCAACTTCAAAAGTTTGGCTGAGA
1 TTTAAGGAATC-GAAGTTAAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * * * * *
20979 ACCAAGAGAGGAACTATTATCACTTAAATATGGTTTTAATACAAAGACCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** * ** *
21044 ATGAGAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTTGAAAAATTG-TGCGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-CGA
* * * ** * * * *
21108 AGGAATGGATCGTTTTAAATACTTTAATGAACTGATGTTATAGAAGAATTCGTAAAAGTTTCTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
** * * *
21173 AGTTCGGTAGTTCGACTGGGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * *
21238 AGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
21303 ATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
388 ATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * **
21345 TTT-----AT----G------A-AA--C--AAAAGTTTGTCAAGTTCGTAAGTTCGACTAAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * ** * *
21390 AAAGAAA-AAACAATTCTCTCATAAATAACATTTTAATTTC-AAG-CACATAAGTTTTTTTTACA
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAA-TTCAAAGAC-CAAAAG--TTGTTTACA
* * * *
21452 AAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAA-CATGGAATGTTCAAAAAATTGCA
127 AAATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAAAAATTGCT
* * * *
21516 CGAAGGAATGGATTGTCTTGAATACTTTAAGGAGCCGAAGTTAAAAAAGAACTCGTAAAAGTTTG
190 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * * *
21581 TCAACTTCGAAAGTTTGGCCGAGAACCAAGAGTGAAACTATTATCACCTAAATAAGTTTTTAGTT
255 TCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * * * ** *
21646 CAAAGACCGAATGTTGTTTATAAAATGGCAACTATTTAGACCAAATGATGCGATTTCCTGAGCAA
320 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCAT
* *
21711 GGAATG-TTC-ATAAAATTGCTCGAAGGAATGGATCGTCTTGAAAAA
385 GGAATGTTTCGA-AAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * **
21756 TTTATGGAATCG-A-TTATAAAAGAACTCATAAAAGTTTGTCAACTTTGGAAGTTCGACTTTA-A
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC-CGAGA
* * ** *
21818 ACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCACAGA-CAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
*** * *
21882 ATGACAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTTGAAAAATTGCTTGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * *
21947 GGAATGGATCGCCTTAAATACTTGAAGGAACCAATGTTATAAAAGAACTTGTAAAATTTTGACAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* ** * ** ** * * *
22012 GTTCAAAAGTTCGATAGAGAACCAAGAAAGAAACAATTAGCAGATAAATAACTTTTAAATTTAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * * *
22077 AACCAAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGTATGGAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
** *
22142 TG-TTCAGAAATTTGCTTGAAGGAATGGATCGTCTTGAATAC
389 TGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* *
22183 TTT-----AT----G-------GAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * * * *
22228 CAAGAAAGAAACAATTCTCACATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAAT
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * *
22293 GACAATCTATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGCGAAG
131 GACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * *
22353 GAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTTGTAAATGTTTTTCAAG
195 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * * * * * * *
22418 TT-TAAAGTTCGGCCTAGATCCAAGAAAGAAACAATTCTCACATAAACAATTTTTTAATTCAAAG
260 TTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAG
* * * * *
22482 ACCAAAATTTGTTTACAAAATGACAACTATTTAGACCAAACGATACGATTTCCAAAGCATGAAAT
325 ACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
* * *
22547 GTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATAC
390 GTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
*** * * * ** *
22587 TTT-CTTAAACTGAAGTTAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTGCTGAGA
1 TTTAAGGAATC-GAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * * * *
22651 ACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** * **
22716 ATGAGAAC-ATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTCGAAAAATTG-TGCGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-CGA
* * ** * * * *
22779 AGGAATGGATCGTCTTAAATA-TTTAATGAACTGATGTTATAGAAGAATTCATAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * *
22843 AGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * *
22908 AGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGTATGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
** *
22973 ATG-TTCAGAAATTTGCTTGAAGGAATGGATCGTCTTGAATAC
388 ATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* *
23015 TTT-----AT----G-------GAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * *
23060 CAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGCCAAAAGTTGTTTACAAAAT
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * *
23125 GACAATTTATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGT-GAA
131 GACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGC-TCGAA
* * * * *
23184 GGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
** ** * * * * *
23249 GTTCGAAAGTTTTACCGAGAACTTAGAGGGGAACTATTATCACCTAATTAAGTTTTTAATTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * * ** *
23314 GACCAAAAGTTGTTTATAAAATTACAACTATTT-GAACGAAATGATATGATTT-CCAGAGTATGG
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGCGATTTCCCA-AGCATGG
* * * *
23377 ATTG-TTCGAAAAATGGATCGGAGGAATGGTTCGTCTTGAATAC
387 AATGTTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATAC
*** * ** * * * * *
23420 TTTAACTCAT-AAAACTATAAAAGAACTCATAAAAGTTTGTCACGTTCAAAAGTTAGACCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * *
23484 CCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * * *
23549 CGACAATCTATTTAGAACAATTGATGCGACTTCCCAAGAATTGAATGTTTGAAAAATTGCTCAAA
130 TGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * *
23614 GGTATAGATCATCTTGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * * * *
23679 CTTCGGAAGTTTGGCCGAGATCCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAGTTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * * ** * *
23744 GACCGAATGTTGTTTAAAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTGACCAAGGAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* * *
23809 TG-TTCAGAAAATTGCTCGAAGGAATGAATCGTCTTGAATAA
389 TGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * ***
23850 TTTATGGAATCGATGTTATAACAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTCGACTTTGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * **
23915 CAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * **
23979 TGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTAAAG
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * *
24044 GAATGGATCGCCTTAAATACTTTAAGGAACAAAAGTTATAAAAGAACTTGTAAAATTTTGTCAAG
195 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * * * * * * * *
24109 TCCAAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACATAAATAACTTTTAAATTTAAAG
260 TTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAG
* * * *
24174 ACCAAAAGTTTTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCTAAGCATGGAAT
325 ACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT
* * *
24239 G-TTCAAAAAATTACTCGAAGGAATGGATCGTCTTGAATAA
390 GTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * *
24279 TTT-----AT----G-------GAA----TAAAAGTTTGTCAAGTTCAAAAGTTCGACCAAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * *
24324 CAAGAAAGAAACAATTCTCACATAAAT-AGCTTTTTAATTTAAAGGA-CAAAAGCCT-TTTACAA
66 CAAGAAAGAAACAATTCTCACCTAAATAAG-TTTTTAATTCAAA-GACCAAAAG-TTGTTTACAA
* * * * * ** *
24386 AATGATAATCTATTTAGAACAATTGATGCAATTTCCCGAA-CAAGGAA-GCTTCGAGTAATTGCA
128 AATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATG-TTCGAAAAATTGCT
* * * * *
24449 CGAAGGAATGGATCGTCTTTG-ATACTTTATGGAACCGAAGTTAAAAAATAACTCATAAAAGTTT
190 CGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
24513 GTCAACTTC-AGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTATCTCCTAAA-AAGTTTTTAA
254 GTCAAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAA
* * * * * * * **
24576 TTCAAAAATCGAATGTTGTTTATAAAATGACAACTACTTAGACCAAATGATGTGATTTCCTGAGC
318 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGC
* * * * * * * *
24641 ACGAAATATTTAGAAAATTGCTCGAAGGAATAGATCGACTTGAATAA
383 ATGGAATGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* ** * * * * *
24688 TTTATGGACCCGATGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAAAAGTTCGACCGTGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* **
24753 CCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * *
24818 TGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAATTTTC-CAGAA
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTC-GAA
* *
24882 GGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * ** * *
24947 GTTCAAAAGCTCGGTCGAGAACCAAGAAAGAAACAATTCACACCTAAATAA-TATTTTAATTCAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGT-TTTTAATTCAA
* * * *
25011 AGACCAAAAGTAGTCTACAAAATGACAACTATTT-GA-CATAAAGATGCAATTTCCCAAGCATGG
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AATGATGCGATTTCCCAAGCATGG
* * * *
25074 ACTG-TTCGAAGAATGGCTCGAAGGAATGGATTGTCTTGAATGC
387 AATGTTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATAC
** * * *
25117 TTTAAGGAATAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * *
25182 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * *
25247 TGACAATCTATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGCGAA
130 TGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * *
25307 GGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTTGTAAATGTTTTTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * * * *
25372 GTT-TAAAGTTCGGCCTAGATCCAAGAAAGAAACAATTCTCACATAAACAATTTTTTAATTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * * * *
25436 GACCAAAATTTGTTTACAAAATGACAACTATTTAGACCAAACGATACGATTTCCAAAGCATGAAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* * *
25501 TGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATAC
389 TGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
*** * * * ** *
25542 TTT-CTTAAACTGAAGTTAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTGCTGAGA
1 TTTAAGGAATC-GAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * * * *
25606 ACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** * **
25671 ATGAGAAC-ATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTCGAAAAATTG-TGCGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-CGA
* * ** * * * *
25734 AGGAATGGATCGTCTTAAATA-TTTAATGAACTGATGTTATAGAAGAATTCATAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * *
25798 AGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * *
25863 AGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* *
25928 ATG-TTCGAGAAATTGCTCGAACGAATGGATCGTCTTGAATAC
388 ATGTTTCGA-AAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * *
25970 TTT-----AT----G-------GAA--C--AAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * ** * * * *
26015 AAAGAAA-AAACAATTCTCTCATAAATAACATTTTAATTTAAAGAACATAAGTTTTTTTTTACAA
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG---TTGTTTACAA
* * * *
26079 AATCACAATCTATTTAGAACAATTGATGCGATTTCCCGAA-CATGGAATGTTCGAAAAATTGCAC
128 AATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAAAAATTGCTC
* * * *
26143 GAAGGAATGGATCGTCTTGAATACTTTAGGGAGCCGAAGTTAAAAAAGAACTCGTAAAAGTTTGT
191 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * *
26208 CAACTTCGGAAGTTTGGCCGAGAACCAAGAGAGAAACTATTGTCACCTAAATAAGTTTTTAGTTC
256 CAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
* * * ** *
26273 AAAGACCGAATGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCAAG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* *
26338 GAATG-TTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAA
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * **
26382 TTTATGGAACCGATGTTATAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTCGACTTTA-A
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC-CGAGA
* * **
26446 ACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * *
26510 ATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTTGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * **
26575 GGAATGGATTGCCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAATTTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * * *
26640 GTTCGAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACATAAATAACTTTTAAATTTAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* ** *
26705 GACCAAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTTGATTTCTCAAGCATGGAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
*
26770 TG-TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
389 TGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* *
26811 TTT-----AT----G------A-AA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * * *
26856 TAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAA
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAA
* * ** * * ** *
26920 TGACAATCTATTTAGAACAATTGATGTAATTTCTCGAA-CATGGAAGGTTCGAGTAATTGCACGA
130 TGACAA-CTATTTAGACCAAATGATGCGATTTC-CCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * ** * *
26984 AGGAATGGATCGTCTTCG-ATACTTTATGGAATCGAAGTTAAAAAATAGTTCATAAAAGTTTGTT
193 AGGAATGGATCGTCTT-GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* *
27048 AACTTC-ATAAGTTC-AGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAAT
257 AAGTTCGA-AAGTTCGA-CCGAGAACCAAGAGAGAAACAATT-CTCACCTAAATAAGTTTTTAAT
** * * * * ***
27110 TTGAAGAACAAATGTTCTTTATAAAATGACAACTTATTTAGACCAAATGATGCGATTT-ATGAGC
319 TCAAAGACCAAAAGTTGTTTACAAAATGACAAC-TATTTAGACCAAATGATGCGATTTCCCAAGC
* * * * *
27174 ATAGAATG-TTCAAAAAAATTGATCGAAGGAATGGATTGTCTTGAATAA
383 ATGGAATGTTTC-GAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * * * *
27222 TTTATGGAACCGGAGTTATAAAAGAGCTCGTAAAAGTTTGTCAACTTCGGATGTTCGGTCGTGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
27287 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * *
27352 TGACAACTATTTAGACGAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTTGAAG
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * **
27417 GAGTGGATCGTCCTAAATACTTTAATGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
195 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * * ** **
27482 TTCGAAAGTTCGACCGAGAACCAAGA-AAAAATAATTCTCACATAAATAACATTTTAATTTGAAG
260 TTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAG
* * * * *
27546 AACATAAGTTTTTTTTACAAAATGACAAGCTATTTAGAACAATTGATGCGATTTCCCGAA-CATG
325 ACCAAAAG--TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATG
* * * * *
27610 GAATG-TTCGAAAAATTGCACAAAGGAATGGATCATCTTAAATAA
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
27654 TTTAAGGAACCGAAGTTAAAAAAGAACTTGTAAAAGTTTTTGAAGTTCAAAAGTTCGGCCGAGAA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * *
27719 CCAA-AAGAGAAACTATTATCACCTAAA-AAGTTTTTAATTCAAAGATCGAATGTTGTTTATAAA
65 CCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * ** * * * *
27782 ATGACAACTACTTAGACCGAATGATGTGATTTCCTGAGCACGAAATATTCAAAAAATTGCTCGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * * *
27847 GGAATAGATCGACTTGAATA-ATTATGGACCCGATGTTATAAAAGAATTCGTAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * **
27911 CTTCGGAAGTTTGACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * *
27976 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
** *
28041 TG-TTCG-AAAATTTTCCTGAAGGAATGGATCGTCTTAAATAC
389 TGTTTCGAAAAATGCT-C-GAAGGAATGGATCGTCTTGAATAC
* * * *
28082 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGTCAAGTTCGAAATTTCGGTCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
28147 CCAAGAAAGAAGCAATTCACACCTAAGTAA-TATTTTAATTCAAAGACCAAAAGTAGTCTACAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGT-TTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
28211 ATGACAACTATTT-GA-CATAATGATGC-AGTTTCCCAAGCATGGACTGTTTGAAAAATGGCTCG
129 ATGACAACTATTTAGACCA-AATGATGCGA-TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG
* * **
28273 AAGGAATGGATTGTCTTGAATGCTTTAAGGAATAAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * * * * *
28338 AAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTTATTTA
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * *
28403 ATGGCCAAAAGTTGTTTACAAAATGACAATCTATTTAGAAC-AAT--T--GATTTCCCGAGCATG
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* *
28463 GAATG-TTCGAAAAATTGCACGAAGGAATGGATCATCTTGAATAC
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
28507 TTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTC-AGAAGTTCTGCCGAGA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGA
** * * * * *
28571 ACTTAGAGAGGAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * ** * * * *
28636 ATTACAACTATTT-GAACGAAATGATATGATTT-CCAGAGCATGGATTATTCGGAAAATGGCTCG
129 ATGACAACTATTTAG-ACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCG
* * **
28699 GAGGAATGGATCGTCTTGAATACTTTAAGGAA-TAAAACTATAAAAGAACTCGTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * *
28763 AAGTTCAAAAGTTCGACCGAAAACCTAGA-AGGAAACAATTCTTACATAAATAAGTTTTT-ATTC
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGA-GAAACAATTCTCACCTAAATAAGTTTTTAATT-
* * * * *
28826 CAAAGACCAAAAGTTGTTTAGAAAACGACAATCTATTTAGAACAATTGATGCGATTTCCCAAGAA
320 CAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCA
* * * *
28891 TTGAATGTTT-GAAAAATTGCTCGAAGGTATAGATCGTCTTGAATAA
384 TGGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * *
28937 TTTAAGGAATCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGGAAGTTCGGTCC-A-A
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGG-CCGAGA
* * * * * * *
29000 AACATAGAGAGAAACTATTATCAACTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTGTATAA
64 ACCA-AGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
** * *** * * *
29065 AATGACAACTATTTAGACCAACCGAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGA
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* ** * * * *
29130 AGGAATGTATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAATAAGTCGTAAAAGTATG-GA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * ** * * * * *
29194 ATGTTTGAAAATT-GCTCCAAGGAATGGACCGTGTTGAATAC--TT-T-A-ATGAACAAAAG-TT
258 A-GTTCGAAAGTTCG-ACCGA-GAA-CCA-AGAG-AGAA-ACAATTCTCACCT-AA-ATAAGTTT
* *** ***** * * * * * **
29252 ATAAAAGAACTTGTAAAAGTT-TGT-CAAGTTTAATGTTCGACCA---AGAACCAAGAAAGAAAC
314 TTAATTCAAAGACCAAAAGTTGTTTACAA----AATG-ACAACTATTTAG-ACC-A-AATGATGC
* * * ** *
29312 AATTCTCACATA-AAT--AAT-TTTTTAATTCAAA-GAC-C-AA--AA--G-TTGT-TT-ACA-A
371 GATT-TCCCA-AGCATGGAATGTTTCGAA---AAATG-CTCGAAGGAATGGATCGTCTTGA-ATA
29362 -
429 C
** * * * * ** ** * **
29362 AATCA-CAA-C-TATTTACACCAAATG-A-TGCGATTTCCCAAGCATG-GAATGTTCGAAA-AAC
1 TTTAAGGAATCGAAGTTA-A--AAA-GAACT-CG---T-AAAAGTTTGTCAA-GTTCGAAAGTTC
* ** ** **** * * *** *
29420 TGCTC-A-AAGGAATGGATCGTTTTGAATACTTTAAGGAACAAAAG-TTTT-A---AAAGATTCG
56 GGC-CGAGAACCAA--GAAAG-AAACAATTC-TCACCTAA-ATAAGTTTTTAATTCAAAGA--C-
* * ** ** * * * ** * * *
29478 TAAAAGTT-TGT-CAAGTTCGGA-AGTTCAGCTGAGAACCAAGAGAGAAACAATTCTCACATA-A
112 CAAAAGTTGTTTACAAAAT--GACAACT-A-TTTAG-ACCAA-A-TGATGCGATT-TCCCA-AGC
* * * * * *
29539 AT-AACATTTTTATTCAAAGACCAAAAGTTGTTTAC-AA--AATGGCAATC-TATTTGGAACAAT
168 ATGGA-A----TGTTC---GA--AAAA-TTG-CT-CGAAGGAATGG--ATCGT-CTT-GAATACT
* * ** * * * * * * * ** *
29599 TTATGCGATTTCCCGAG-CATAGAATG--TTCG-AAAAATTTCTCGAAGAAATGGATTGTGTTGA
216 TTAAG-GA--ACCAAAGTTATA-AAAGAACTCGTAAAAGTTTGTC-AAG--TTCGAAAGT-TCG-
** * ** * * *
29660 ATACTTTATGGAACTGAAGTTA-AAA-AATAACT--CGT-AA-AAGTTTGTCAACTTCGAAAGTT
272 --AC-CGA--GAAC-CAAGAGAGAAACAAT-TCTCACCTAAATAAGTTT-TTAA-TTC--AA---
* * **** * *
29719 TGGCTGAGAACCAAGAGAGGAACTATTATGACTTAAATATG-GTTTTAATTCAAAGACCAAAAG-
323 ------AG-ACCAA-A-A-G--TTGTT-T-AC--AAA-ATGACAACT-ATT--TAGACCAAATGA
** ** * * * * ** *
29782 TTTG-TTT-ATAA-AATGAAAACTTTTTAGACCATGTGATGCAATTTCCTG-A-GCATGGAAT-G
368 TGCGATTTCCCAAGCATG-GAA-TGTTTCGA--A--AAATGC----T-C-GAAGGAATGG-ATCG
*
29841 T-TTGGAA-AA
420 TCTT-GAATAC
* * *
29850 TTGTGCAAAGGAAT-GATCGTCTTAAATACTTTAATAAACTGATGTCATAGAAGAATTCGTAAAT
1 TT-T---AAGGAATCGA-AG--TT-AA-A----AA-GAACT--CGT-A-A-AAG---T-------
* * ** * ** *
29914 GTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACTTTTCTCGCCTAAATAAGTTTT
37 --TTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTT
* * *
29979 TAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCA
100 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCA
* * * *
30044 AGCATGGAATGTTCTAAAAATTACTCGAAGGAATGGATCGTCTTGAATAGTTTATGGAA-C----
165 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAG
*
30104 ----------A--C----AAGTTTGTCAAGTTCGAAAGTTCGACCGAGAA-CAA-AGAAAATACA
230 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA-ACA
* * * * * * * *
30151 ATTCTCGCATAAATAACTTTTTAATTTAAAGAACATAAGTTTTTTTTACAAAGTGACAATCTATT
294 ATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAA-CTATT
* * *
30216 TAGAACAATTGATGCGATTTCCCGAA-CATGGAATG-TTCGAAAAATTGCACGAAGGAATGGATC
356 TAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATC
30279 GTCTTGAATAC
419 GTCTTGAATAC
* * * * * *
30290 TTTAAGGAACCGAAGTTAAAAAAGAACTCCTAAATGTTTGTTAACTTCGAAAGTTCGACCGAGAA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * * *
30355 CCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
** *
30420 TGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCAAGGAATGTTC-AGAAAATTGCTCGAA
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * * * *
30484 GGAATGGATCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCATAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * *** * **
30549 CTTCGGATGTTCGACTTTGAACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
*** *
30614 GA-CAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTGAGCGTGGAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* *
30678 TG-TTCGAAAAATTGCTTGAAGGAATGGATCGTCTTAAATAC
389 TGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * ***
30719 TTTAAGGAACCAAAGTTATAAAAGAACTTGAAAAATTTTGTCAAGTTCGAAAGTTCAATCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * * * *
30784 CCAAGAAAGAAACAATTATCACATAAATAACTTCTAAATTTAAAGATCAAAAGCTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * *
30849 TGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTC-AGAAAATTGCTCTAA
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAA
*
30913 GGAATGGATCGTCTTGAATAC--T------------TTAT---GGAA----TAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * *
30957 GTTCGAAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* ** * * *
31022 GAACAAAAGCTT-TTTACAAAATGACAATCTATTTAGAATAATTGATGCAATTTCCTGAA-CATG
324 GACCAAAAG-TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCC-CAAGCATG
* * * * *
31085 GAA-GGTTCGAGTAATTAG-ACGAAGGAATTGATCGTCTTCG-ATAC
386 GAATGTTTCGA-AAAAT-GCTCGAAGGAATGGATCGTCTT-GAATAC
* * * * *
31129 TTTATGGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTC-AGAAGTTCGGCCGAGA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGA
* * * * * *
31193 ACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAA
64 ACCAAGAAAGAAACAATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* *** * *
31257 AATGACAACTATTTAGACCAAATGATGCAATTTCTTGAGCGTGGAATGTTCAAAAAATTGCTCGA
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * * *
31322 AGGAATGGATTGTCTTGAATAATGTATGGAACCGAAGTTATAAAAGAGCTCGTAAAAGTTTGCCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * ** *
31387 ACTTCGGATGTTCGACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTGAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* ***
31452 AGGCCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTGGAGCATGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* * * * *
31517 ATG-TTCAAAAAATTACTTGAAGGAGTGGATCGTCTTAAATAC
388 ATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
31559 TTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCGAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
31624 CTAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * **
31689 TGACAACTATTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA--ATTCGGAA-G
130 TGACAACTATTT-A-G-ACCAAA-TGAT----G----CG----A-TTTCCCAAGCA-T-GGAATG
* ** * *** * * ** *
31751 TTCGACCAAGAA--CCAAGAAAGAAACAATTC-TCACATAAATAACTTTTTAATTTAAAGGGCAA
176 TTCGA--AA-AATTGCTCGAAGGAATGGA-TCGT--CTTGAAT-AC--TTTAA--GGAA---CCA
* ** ** * * * *
31813 AAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATTTCCCGAGCATGGAATGTTCGA---
227 AA---G-TTATAAAA-G--AA-CT-CGT--AA-AA--G-TTTGTCAAG-TTCGAAAGTTCGACCG
* * * ** ** * ***** *
31875 A-AA--ATTGCGTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACT
276 AGAACCA-AGAGAGAAACAAT-TCTCA-CCT-AA-A---TAA-GTTTTTAA-TT--CAAAG-AC-
* ** * * * * * * *
31937 CGTAAATGTT-TTT-CAAGTTCGGA-AGTTCTACTGAGAACTTAGAGAGGA-ACTATTATCACCT
327 C--AAAAGTTGTTTACAAAAT--GACA--ACTATTTAG-AC-CA-A-ATGATGCGATT-TC-CC-
** * * * * **** *
31998 AA--AT--AA-GTTTTTAATTCAAA-GAC-CAAAAG-TTGTTTATAAAAATTACAACTA-
379 AAGCATGGAATGTTTCGAA---AAATG-CTCGAAGGAATG--GAT-CGTCTT-GAA-TAC
* *** * * ** * ** *
32049 TTTGAACGAAAT-GATATGATT-TCCAGAGCAT-G-GATTGTTCGGAAAATGGCTCGGAGGAATG
1 TTT-AA-GGAATCGA-A-G-TTAAAAAGAAC-TCGTAAAAGTT-TGTCAA--GTTC-GA--AA--
* * * * * * * * ** *
32110 GATT-GTCTTGA-ATACTTTAAGGAA-TAA-AA--CT-A--TAAAAGAACTCGTAAAAGTTTATC
52 G-TTCGGC-CGAGA-AC--CAAGAAAGAAACAATTCTCACCT-AAATAAGT-TTTTAA-TTCA--
** * * * * * * * ***
32166 AAGTTCAAAAG-T-TTGACCGAGAACCTAGAAAGAAACAATTCT-TACATAAATAAGTTTTTATT
107 AAGACCAAAAGTTGTTTA-C-A-AA-AT-G--A-CAACTATT-TAGAC-CAAAT--GATGCGATT
* * * ** * * * *
32228 T-CAAAGACCA--AAAGTTGTTTACAAAACGACAATCTATTTAGAA-CAATTGAT-G---TGATT
160 TCCCAAG--CATGGAA--TG-TT-C-GAA--A-AAT-T-GCTCGAAGGAATGGATCGTCTTGAAT
* ** ** * * * * * *
32285 TC-CCAA-GAATTGAATGTT-TGAAAA-ATTTCTCG--AAGGTATAGATC--GTCTTGAATAATT
213 ACTTTAAGGAA-CCAAAGTTAT-AAAAGA--ACTCGTAAAAGT-TTG-TCAAGT-TCGAA-AGTT
* * * * * * * * *
32342 -TA-AG-GAACCGAAGTTA-AAAAAGAA--CT--CGTAAA-GA-TTTTTGAAGTTCGGAAGTTCG
270 CGACCGAGAACC-AAG--AGAGAAACAATTCTCACCTAAATAAGTTTTT-AA-TTC-AAAG-ACC
** **** * * * * *** * * *
32397 ATCCAG-AACCTA-GAGA-GA-AACTA-TTATCACCTAAAT-AAGTTTTTAATTCAAAG-ACT-A
328 A-AAAGTTGTTTACAAAATGACAACTATTTA-GACC-AAATGATGCGATT--TCCCAAGCA-TGG
** * * ** * *
32454 ACAGTTGTTT--ATAAAATGACTACG-A--TTTAGACCAAC--CAAAAC
387 A-A--TGTTTCGA-AAAATG-CT-CGAAGGAATGGATCGTCTTGAATAC
** ** * * * * * *
32496 GATTTCCTGGGCTTGAAATGTTCAAAAA-ATTGCTCG-AAGGAATGTATCGTC---TTGGATACT
1 --TTT-AAGGAATCG-AA-GTT-AAAAAGA--ACTCGTAA--AA-GT-TTGTCAAGTTCGAAAGT
*** * * * * * **
32556 T--TAAG-GAACTGAAGTTATA-AAATAA--GT--CGT-AA-AAGTTTATTAACTTCGAAAGTTC
54 TCGGCCGAGAAC-CAAG--AAAGAAACAATTCTCACCTAAATAAGTTT-TTAA-TTC-AAAGACC
**** * * * * *** * *
32611 -GGCCTAG--AACCAAGAGA-GA-AACTATTTTCAG-CTAAAT-AAGTTTTTAATTCAAAGACCA
113 AAAAGTTGTTTA-CAA-A-ATGACAACTA-TTT-AGACCAAATGATGCGATT--TCCCAAG--CA
* * * *** * * *
32669 --AAAGTTGTT-TACAAAATTACAACTACCAGACCAAAT-GATGCAATTTCTCGAGCATCGAATG
169 TGGAA--TGTTCGA-AAAATT---GCT--C-GAAGGAATGGAT-C---GTCTTGA--AT--ACT-
* * ** * * * * * *
32730 TT-CGGAA-TATTGTCAAAAGAATGGAC-CGCCTTGAATACTTTAAGGAATCAAAGTTATGAAAG
216 TTAAGGAACCAAAGTTATAA-AA-GAACTCG---T-AAAAGTTT---G--TC-AAGTT-CGAAAG
* ** *** * ** * * ****
32792 AACTCGTA-TAAGTTTTTC-AG-GTTGGTA-AGTTCGGCCAAGAACC-AAA-AGAG-AAACAATT
268 --TTCG-ACCGAG--AACCAAGAG-AGAAACAATTC--TC----ACCTAAATA-AGTTTTTAATT
** * ** * * *
32850 C--TCACCTAAATAAGTT-TTTAATTGGAAAACCAAAAGTAGTTTACAAAATAACAACTATTTAG
320 CAAAGACC--AA-AAGTTGTTT-A---CAAAATGACAACTA-TTT-----A-GAC--C-------
* * * * * * *
32912 ACCTAATGATGTGATTTCCCAAGCATGGACT-ATACAGAAAATTTG-TCGAAGAAATGTATCGTC
362 A---AATGATGCGATTTCCCAAGCATGGAATGTTTC-GAAAA-ATGCTCGAAGGAATGGATCGTC
32975 TTGAATAC
422 TTGAATAC
* * * *
32983 TTTAATGAA-CGAAAGTTATAAAAGCACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCGGCCGAGA
1 TTTAAGGAATCG-AAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * *
33046 TCCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
33111 ATGACAACTATTTAGACCAAATGATACGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTCGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* *
33176 GGAATGGATCGTCTTGTATACTTTAAGGAACCAAAGTTATAAAAGAACTCG-AGAAAGTTTTTCA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTA-AAAGTTTGTCA
* * * * *
33240 ACTTCGAAAGTTCGGCCCA-AAGCCTAGAGAGAAACAATTCTCACCTAAATTAGTTTTTAATTCA
258 AGTTCGAAAGTTCGACCGAGAA-CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * *
33304 AAGA-C------------C---A--A-AACTATTTAGACCAAATGATGCGATTTCTCGAGGATTG
322 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* *
33350 AATG-TTCGAAAAATTGCTCGAAGGAATGGATTGTCTTGAATAA
387 AATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * * * * * *
33393 TTTATGGAACCGATGTTATAAAAGAACTCATTAAATTTTGTTAACTTCGGAAGTTCGACAC-TGA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC-CGAGA
* * ** *
33457 ACAAAGAGAGAAATTATTCTCACCTAAGTAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * *
33521 ATGAAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTTGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * * * ***
33586 GAAATGGATCGTCTTAAATACTTTAAGGAATCGAAGTTCTGAAAGAACTCGTAAAATTTTTTTTG
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * *
33651 GTTTGTAAGTTCGGCCGATAACCAAAAGAGAAACAATTCTCACCTAAATCAGTTTTTAATTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * * ** *
33716 GTCCTAAAGTTGTTTACAAAATCACAACTATTTAGACCAAATGATATGATTTCCCAAGCATGTAA
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* *
33781 TG-TTCGAAAAACTGCTTGAAGGAATGGATCATCTTGAATAC
389 TGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
33822 TTTAAGGAA-CAAAAGTTTTAAAAGAACGCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCTGAGA
1 TTTAAGGAATC-GAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * *
33886 ACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAAGACCAAAAAGTTGTTTACA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACC-AAAAGTTGTTTACA
* * * * *
33950 AAATGACAATCTATTTGGAACAATTTATGCGATTTCCCAAGCATAGAATGTTCGAAAAATTGCTC
127 AAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTC
* * * * * *
34015 GAAGGAATGGATCGTGTTGAATACTTTATGGAACTAAAATTAAAAAAGAACTCGTAAAAGTTTAT
191 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
** * *** * * *
34080 -AAAAT-GACAA---CTATTTAG-ACCATGTGATG---CAATT-T--CCTGAGCATGGAATGTTC
256 CAAGTTCGA-AAGTTCGACCGAGAACCAAGAGA-GAAACAATTCTCACCT-A-AAT--AA-GTT-
*** **** ** ** ** * ** *
34133 GAAAAATTGTGCGAAGAATGGATCATCTTAAAGACTTTAATG--AACTGATGTTATAGAAGAATT
313 -TTTAATTCAAAGACCAAAAG-TTGT-TTACA-A----AATGACAACT-A--TT-TAGACCAAAT
*** ** * * * ** * *
34196 CG-TAAAAGTTTGTCAAG-TTCGGAA-G-TTCGACTGAGAA-CCAAGAGAGAAAT-TATTC-TCA
366 -GATGCGA-TTTCCCAAGCAT-GGAATGTTTCGA---AAAATGCTCGA-AGGAATGGA-TCGT--
* * *
34254 CCTAAATAAGTTTT
421 CTTGAAT-A----C
* ** * * * * * *
34268 TAATTCAAAGACCCAAAGTTGTTTACAA-AA-T-G-ACAAATATTTAGACCAAATGATTCG--AT
1 T--TT-AAGGAATCGAA---GTTAAAAAGAACTCGTA-AAA-GTTT-G-TC-AA-G-TTCGAAAG
* *** *** * *** * * * ***
34327 TTC--CCAAGCATGGAATGTTCGAAA-AATTGCTTGA-AGGAATGGATCGTCTTGAATACTTTTT
53 TTCGGCCGAG-AACCAA-GAAAGAAACAATT-C-TCACCTAAAT--A-AGT-TT--TTAATTCAA
* * * ** * *** * ** *
34388 GGAACAAAAGTT-TGT-CAAGTTTGA-AAGTTCGACCGAGAACAAA-GAAAAAACAATTCTCGCA
108 AGACCAAAAGTTGTTTACAA-AATGACAA---CTATTTAGACCAAATG---ATGCGATT-TC-C-
* * ** * ** ** * * *
34449 TAAATAACATTTTAAT-TTAAAGAACATAAGTTTTTTTTACA-AAATGACAATC-TATTTAGAAT
163 --CA-AGCA-TGGAATGTT--CGAA-A-AA--TTGCTCGA-AGGAATG--GATCGT-CTT-GAAT
* * * * *
34511 AGTTGATGCGATTTACCGAACATGGAATGT-TCGAAAA-ATTACACG-AAGGAA--TGGATC--G
213 ACTTTAAG-GA---ACC-AA-A--G--T-TAT--AAAAGA--ACTCGTAA--AAGTTTG-TCAAG
* * * * * * * *
34569 -TCTGAATACTT-TA-AG-GAACCGAAGTTA-AAAAAGAA--CT--CGT-AA-AACTTTGTCAAC
260 TTC-GAA-AGTTCGACCGAGAACC-AAG--AGAGAAACAATTCTCACCTAAATAAGTTT-TTAA-
**** ** *** * * ** *
34623 TTCAGAAG---TTTGGCCGAGAACCAAGAGA-GA-AACTA-TTATCACCTAAATAAGTTTTGAGT
318 TTCA-AAGACCAAAAGTTGTTTA-CAA-A-ATGACAACTATTTA-GACC-AAAT--GATGCGATT
* ** ** * * * * * *
34682 T-CAAAG-ACCGAATGTTGTTTATAAAACGACAACTATTTAGACCAAAT-GAT-G-C--GATTTC
375 TCCCAAGCATGGAATGTT-TCGA-AAAATG-C-TCGA---AG---GAATGGATCGTCTTGAATAC
* * * * *** * * * * **
34740 -CTGAGCAA-GGAATGTTTGAAAAATTGCTCG--AAGGTATAGATC--GTCTTGAATAATT--TA
1 TTTAAGGAATCGAA-G-TT-AAAAAGAACTCGTAAAAGT-TTG-TCAAGT-TCGAA-AGTTCGGC
* * * * ** *
34797 AG-GAACCGAAGTTAAA-AAAGAA--CT--CGT-AA-AAGTTTTTGAATTTCGGAAGTTC---GG
59 CGAGAACC-AAG--AAAGAAACAATTCTCACCTAAATAAGTTTTT-AA-TTC-AAAGACCAAAAG
***** * * *** * * *
34851 TCCAAAACATAGAGA-GA-AACTA-TTATCACCTAAAT-AAGTTTTTAATTCAAAGACCA--AAA
118 TTGTTTACA-A-A-ATGACAACTATTTA-GACC-AAATGATGCGATT--TCCCAAG--CATGGAA
* * ** * * * ** ** * * ** * *
34910 GTTGTT-TATAAAA-TG-AC-AACTATTTAGACCAAC-CAAAGCAATTTCCTGG-GCTTGAAATG
174 --TGTTCGA-AAAATTGCTCGAAGGA-ATGGATCGTCTTGAA-TACTTT-AAGGAAC--CAAA-G
* ** * * * * * *
34969 TTCAAAAAATTACTCGAAAGAATGTATCGTC---TT-GAATACTT-TA-AG-GAACCGAAGTTAT
230 TT-ATAAAAGAACTCGTAA-AA-GT-TTGTCAAGTTCGAA-AGTTCGACCGAGAACC-AAG--AG
* * * ** *** * *
35027 A-AAATAA--GT--CGT-AA-AAGTTTTTTAACTTCAAAAGTTC-AGCCTAG--AACCAAGAGA-
287 AGAAACAATTCTCACCTAAATAAG-TTTTTAA-TTC-AAAGACCAAAAGTTGTTTA-CAA-A-AT
* * * *** * * *** * **
35081 GA-AAATATTCT-CACCTAAAT-AAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAAT--T
346 GACAACTATT-TAGACC-AAATGATGCGATT--TCCCAAGCATGGAATGTT-TCGA-AAAATGCT
** * * * * **
35140 AC-AACTATTAGACCAAATGATGCAAT--
405 -CGAAGGAATGGATC--GTCTTG-AATAC
* * ** * * * * *** * *
35166 TTCT-CGAGCATCGAATGTTTGAAA-AA-TTGTCAAAGGAATGGATCGCCTT-GAATACTTTAAG
1 TT-TAAG-GAATCGAA-GTTAAAAAGAACTCGT-AAAAG-TTTG-TCAAGTTCGAA-A-GTT-CG
* * ** * * * * *
35227 GAATCGAAGTTATGAAGGAACTTGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGAACCAAAA
57 G--CCG-AG-AACCAA-GAA--AG-A-AA------CA-ATTC------TC-ACC--TAA--ATAA
***** ** * ** * * *
35292 GAGAAACAATTC--TCACCTAAATAAGTT-TTTAATTGGAAAACCAAAAGTAGTTT--ACAAAAT
95 G-TTTTTAATTCAAAGACC--AA-AAGTTGTTT-A---CAAAATGACAACTA-TTTAGACCAAAT
* ** * * * *
35352 AAAAACTATTTAGACCTAATG-ATGTGATTTCCCAAGCATGGACTGTACAGAAAATTTG-TCGAA
151 -GATGCGATTT---CCCAA-GCATG-G--------A--AT-GT---T-C-GAAAAATTGCTCGAA
* * * * * * *
35415 GGAATGTATCATCTTGAATACTTTAATGAACGAAAGGTATAAAAGCACTTGTAAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * ** * *
35480 GTT-TAAAGTTCGGCCGAGATCCAGGAAAGAAACAATTCTCACAAAAAGAATTTTTTAATTCAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* *** * ****
35544 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATACGATTTGTAAAG-TTTTTC
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* ** * ** * * * * *
35608 TGGTTT-GTAAGTTCGGTCGAGAACCAAAAGTGAAACAATTCTCACCTAAATAAGTT
389 T-GTTTCGAAAAAT-GCTC--GAA--GGAA-TGGATC--GTCT----TGAAT-A--C
* * * ** * ** * ** * *
35664 TTTAATTGAAAAACCAAAAGTATTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCA
1 TTTAA--G--GAATC-GAAG---TTA-AAAA-G--AACT-CGTAAAAGT-TTG-T-CAAGTTCGA
** * * * * * * *
35729 AAGTATGAACTGTACGAAAAATTGCTCGAAGGAATGAATCATCTTAAAT-ACTCTAAGGAACAAA
50 AAGT-T---C-GGCCG-AGAA---C-C-AA-GAAAGAAACA-ATT--CTCAC-CT-A--AATAAG
* ** * * *
35793 TGTTTT-A---AAAGAACTCGTAAAAGTT-TGT-CAAGTTCAGAAGT-TTGATCGAGAACCAAGA
96 T-TTTTAATTCAAAG-AC-C--AAAAGTTGTTTACAAAATGACAACTATT--T--AG-ACCAA-A
* ** * * * * * * *
35851 GAGAAACAATTCTCACATA-AAT-AACATTTTTATTCAAACACCAAAGGTTGTTTAC-AA--AAT
150 -TGATGCGATT-TCCCA-AGCATGGA-A----TGTTC-GA-A--AAA--TTG-CT-CGAAGGAAT
* * * * * * * * * * *
35911 GACAATC-TATTTAGAACAATTTATGCGATTTCCCAAG-TATGGAATG--TTTG-AAAA--TTGC
199 G--GATCGT-CTT-GAATACTTTAAG-GA--ACCAAAGTTAT-AAAAGAACTCGTAAAAGTTTG-
* * ** * ** * * * * * ** *
35969 TCGAAGGACTGGACCGTGTTGAATACTTTAATGAA-CAAAAGTTATAAAAGAACTTGTAAAAGTT
255 TC-AA-G-TTCGAAAGT-TCG---AC--CGA-GAACCAAGAG--A-GAAACAA-TTCT-CACCTA
** * *** * **
36033 TGTCAAG--TTTAATGTTCGATCGAGAACCAAGAAAGAAACAACTCTCACATAAA-GA-ATTTTT
305 AAT-AAGTTTTTAA--TTC-A--AAG-ACC-A-AAAG----TTGT-TTACA-AAATGACA---AC
* * * * ** *
36094 TAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGACCAAAGG-ATGCGATTTCCC
352 T-ATT--TAGACC-AAA--TG-ATGCGATTTC-C--C-A---AG--C-ATGGAAT--G-TTT---
*
36158 AAGCATGTAATGTTTGAAAAACTGCTCGAAGGAATGGATCGCCTTGAATAC
394 ---C--G-AA------A--AA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
36209 TTTAAGGAA-CAAAAGTTTCAAAAGAACTTGTAAAAGTTTTTCAAGTTC-AGAAGTTTGGCCGAG
1 TTTAAGGAATC-GAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAG
* * * * *
36272 AACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTTAAAGACCAAAAGTTGTTTTCA
63 AACCAAGAAAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
36336 AAATGACAATCTATTTGGAACAATTTATGCAATTTCCCAAGCATAGAATGTTCGAAAAATTGCTC
127 AAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTC
* * ** *
36401 GAAGGAATGGATCGTGTTGAATACTTTATGGAACTGAAGTTAAAAAAGAACTCGTAAAAGTTTGT
191 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * * * * *
36466 CAACTTCGAAAGTTTGGCTGAGAACCAAGAGAGGAAA-TATTATTACTTAAATATGTTTTTAATC
256 CAAGTTCGAAAGTTCGACCGAGAACCAAGAGA-GAAACAATTCTCACCTAAATAAGTTTTTAATT
* ** * **
36530 CAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCATGTGATGCAATTTCCTGAGCAT
320 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCAT
* * *
36595 GGAATG-TTCGGAAAATTG-TACGAAGGAATGGATCATCTTAAATA-
385 GGAATGTTTC-GAAAAATGCT-CGAAGGAATGGATCGTCTTGAATAC
* * * * * * * *
36639 TTTAATGAA-CTGATGTTATAGAAGAATTCGTAAACGTTTGTCAAGTTTGAAAGTTCGACTGAGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* ** * *
36703 ACCAAGAGAGAAACTGTTCTCACCTAAATAAGTTTTTAATTCAAAGAACGAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * * *
36768 ATGACAATCTATTTGGAACAATTTATGCGATTTCCCAAGCATAGAATGTTTGAAAAATTGCTCGA
129 ATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * * *** * * *
36833 AGGAATGGATCGTGTTGAATACTTTATGAAATTGAAGTTAAAAAAGAAATTGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * *** * * * * * *
36898 ACTTCGAAAGTTTGGGTGAGAACCAAGAGAGGAAA-TATTATTACTTAAATATGTTTTTAATCCA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGA-GAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * ** * **
36962 AAGACCAAAAGTTGTTTATAAAATGAGAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGG
322 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* *
37027 AATG-TTCGAAAAATTG-TACGAAGGAATGGATCATCTTAAATA-
387 AATGTTTCGAAAAA-TGCT-CGAAGGAATGGATCGTCTTGAATAC
* * * * * * * **
37069 TTTAATGAA-CTGATGGTATAGAAGAATTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGACTAAGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * *
37133 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGAACGAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * *
37198 ATGACAATCTATTTGGAACAATTTATGCGATTT-CCAAGCATAGAATGTTCGAAAAATTGCTCGA
129 ATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * ** *
37262 AGGAATGGATCGTGTTGAATACTTTACGGAACTGAAGTTAAAAAAGAACTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * ** * * * * * *
37327 ACTTCCAAAGTTTGGCTAAGAACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCGA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * ** * **
37392 AGACAAAAAGTTGTTTATAAAATGACAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGGA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* * * * *
37457 ATGTTTGGAAAATTG-TGCGAAGGAATGGGTCATCTTAAATA-
388 ATGTTTCGAAAAATGCT-CGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
37498 TTTAATGAA-CTGATGTTATAGAAGAATTCGTAAAAGTTTGTCAAGTTCGAAAGTTTGACTGAGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * *
37562 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* *
37627 ATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
*
37692 GGAATGGATCGTCTTGAATAC--T------------TTAT---GGAA--C--AAAAGTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * ** *
37736 GTTCGAAAGTTCGACCGAGAACAAAGATA-AAACAATTCTCTCATAAATAACATTTTAATTTAAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* ** * * *
37800 GAACTTAAGTTTTTTTTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAA-CA
324 GACCAAAAG---TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCA
* * *
37864 TGGAATG-TTCAAAAAATTTCACGAAGGAATGGATCGTCTTGAATAC
384 TGGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
37910 TTTAAGGAA-CTAAAGTTAAAAAAGTACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGA
1 TTTAAGGAATC-GAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * * *
37974 ACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * * * *
38039 ATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGAAAAGTTCAAAAAATTGCTTGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * *
38104 GGAATGGAT-GCCTTAAATACTTTAAGGAACGAAAGTTATAAAAGAACTTC-TAAAATTTTGTTA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC-TCGTAAAAGTTTGTCA
* * * * * *
38167 AGTTCGAAAGTTCGATCGAGAACCAAGAAAGAAACAATTAC-CACATAAATAACTTTTAAATTTA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATT-CTCACCTAAATAAGTTTTTAATTCA
* * * * *
38231 AAGACCAAAAGTAGTTTACAAAATGAAAAATATTTAGACCAAATGATTCTATTTCCCAAGCATGG
322 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* * *
38296 AATG-TTCAGAAAATTGCTTC-AAGGAATAGATCGACTTGAATAC
387 AATGTTTC-GAAAAATGC-TCGAAGGAATGGATCGTCTTGAATAC
*
38339 TTT-----AT----G-------GAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * *
38384 TAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGAT
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * * * * *
38449 GACAACTATCTAGACCTAATGATGCGATTTCTCAAGCATGGACTGTACGTAAAATGGATCGAAGG
131 GACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGG
* *
38514 AATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAAT
196 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGT
* ** * * * * *
38579 TC-AGAAGCTCGATTGAGAAGCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAG
261 TCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA-
* * *
38643 GA-CAAAAGTTGTTTACAAAATGACAATCTATTTAGAAC-AAT--T--GATTTCCCGAGCATGCA
324 GACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* * *
38702 ATG-TTCGGAAAATTGCGCGAAGGAATGGATCATCTTGAATAC
388 ATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
38744 TTTAAGGAACCCAAGTTAAAAAAGAACTCATAAATGTTTTTCAAGTTCGGAAGTT-GTGCCGAGA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG-GCCGAGA
** * * ** * *
38808 ACTTAGAGAGGAATTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** ** * * * * *
38873 ATTACAACTATTT-GAATGAAATGATATGATTTCCAAAGCATGGATTGTTCGGAAAATGGCTCGG
129 ATGACAACTATTTAG-ACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* ** * **
38937 AGGAATGGATTGTCTTGAATACTTTAAGTTA-TAAAACTATAAAAGAACTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * * * *
39001 AGTTCAAAAGTTCGACCGAAAACCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTATTTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * * *
39066 AGACCAATAGTTGTTTACAAAACGACAATCTATTTAGAACAATTGATGCGATTTCCCAAGAATTG
323 AGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* * * *
39131 AATGTTT-GAAAAATTTCTCGAAGGTATAGATCGTCTTGAATAA
387 AATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * *
39174 TTTAAGGAACCGAAGTTAAAAAAGAACTCGT-AAAGTCTTTTGAAGTTCGAAAGTTCGGTCC-AA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGT-TTGTCAAGTTCGAAAGTTCGG-CCGAG
* * * * *
39237 AACCTAGAGAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAA
63 AACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
*** * *** * * *
39302 AATGACAACTATTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGA
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * * *
39367 AGGAATGTATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAATG---TCGTAAAAGTTTGTT
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA-GAACTCGTAAAAGTTTGTC
* * * * * ** *
39429 AACTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTTAACTC
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG-TTTTTAATTC
* * * * * *
39494 AAAGACCAAAAGTTGTTTACAAAATTACAACTA-TTAGACCGAATGATGCAATTTCTCGAGCATC
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* * *
39558 GAATG-TTCGGAAAATTG-TCAAAGGAATGGATCGCCTTGAATAC
386 GAATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
39601 TTTAAGGAATCGAAGTTATGAAAGAACTCGTATAAGTTTTTTAGGTTCGTAAGTTCGGCCAAGAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
*
39666 CCAA-AAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCGAAA-ACCAAAAGTAGTTTACAA
65 CCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAA
* * * * * * *
39729 AATAACCACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTACAGAAAATTTG-TCG
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC-GAAAAATTGCTCG
* * * * * *
39793 AAGAAATGTATCGTCTTGAATACTTTAATGAACGAAAGTTATAAAAGCACTTGTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * * *
39858 AAGTT-TAAAGTTCGGCCGAGATCCAAGAAAGAAACAATTCTCACATAAAGT-ATTTTTTAATTC
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAA-TAAGTTTTTAATTC
*
39921 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATACGATTTCCCAAGCATG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* * * * *
39986 AAATGTTTAGAAAATTGTTTGAAGGAATGGATCGTCTTGAATAC
386 GAATGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
40030 TTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAACTTCGAAATTTTGGCCCA-AA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
40094 GCCAAGAGAGAAATAATTCTCACCTAAATTAGTTTTTAATTCAAAGA-C------------C---
65 -CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
40143 A--A-AACTATTTAGACCAAATGATGCGATTTCTCGAGGATTGG-ATGTTCGAAAAATTGCTCGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCA-TGGAATGTTCGAAAAATTGCTCGA
* * * * *
40204 AGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATGAAAGAACTCGTAAAAATTTTTCT
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * * * *
40269 GGTTTGTAAGTTCGGCCGAGAACCAAAAGAGAAACAATTCCCACCTAAATAAGTTTTTAATTGAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * *
40334 AAACCAAAAG-TATTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCCAAGTAT-GA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* * * *
40397 ACTG-TACGAAAAATTGCTCGAAGGAATGAATCATCTTAAATAC
388 A-TGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
40440 TCTAAGGAA-CAAATTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCTGTCGAGAA
1 TTTAAGGAATCGAA-GTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
40504 CCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTGAAACACC-AAAGTTGTTTACAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * * *
40567 ATGACAATCTATTTAGAACAATTTAT-CTGATTTCCCAAGAATGAAATGTTTG-AAAATTGCTCG
129 ATGACAA-CTATTTAGACCAAATGATGC-GATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG
* * * * **
40630 AAGGAATGGACCGTGTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTTTTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * * * *
40695 AAGTT-TACTA-TTCGACCGAGAACCAGGAAAGAAACAATTCTCACATAAAGAATTTTTTAATTC
257 AAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
* * *
40758 AAAGACCAAAAGTTGTTTACAAAATCACAACTGTTTAGACCAAATGATACGATTTCCCAAGCATG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* *
40823 TAATG-TTCGAAAAACTGCACGAAGGAATGGATCGTCTTGAATAC
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
40867 TTTAAGGAA-CAAAAGTTTTAAAAGAACTCGTAAAAGTTTGTTAAGTTCAAAAGTTCGGTCAAGA
1 TTTAAGGAATC-GAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * *
40931 ACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAACACCAAAATTTATTTACAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * * * *
40995 AATGACAATATATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGTTTG-AAAATTGCTCA
128 AATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG
* * * * * * *
41059 AAGGAATGGACCGTGTTGAATACTGTAATGAACAAAAGTTATAAAAGAATTTGTAAAAGTTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * *
41124 AAGTT-GAATGTTCGACCGAGAACCACGAAAGAAACAATTCTCACATAAAGAA-TTTGTTAATTC
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTT-TTAATTC
* * *
41187 AAAGACCAAAAGTTGTTTACAAAATCATAACTATTTGGACCAAATGATGCGATTTCCCAAGCATG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* ** *
41252 TAATG-TTCGAAAAACTGCTCGAAGGAATGGATTATCTTGAATTC
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * *
41296 TTTAAGGAATAGAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAA
1 TTTAAGGAATCGAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
41361 CCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAAGACCAAAAGTTGTTTACAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * * * *
41425 ATGACAATCTATTT-GAAACAATTTATGGGATTTCTCAAGCATAGAATGTTCGAAAAATTGCTCA
129 ATGACAA-CTATTTAG-ACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG
* * ** * *
41489 AAGGAATGGATCGTGTTGAATACTTTATGGAACTGAAGTTAAAAAAGAACTCGTAAAAGTTTGCC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * ** ** ** * * * * * *
41554 AACTTCG-AACTTAAATATGTTTTTAATTCAA-AGACCAAA-AGTTGTTTA--TAAAATGAGAAC
257 AAGTTCGAAAGTTCGA-CCG---AGAA-CCAAGAGA-GAAACAATT-CTCACCT-AAAT---AAG
* *** ** * * ** * * * ** * ***
41614 TATTTAGGCCATGTGATGC--AATTTCCTGAGCATGGAATGTTCAGAAAATTGTGCGAAGGAATG
311 TTTTTAATTCA-AAGA-CCAAAAGTTGTTTA-CA--AAATG-ACA-ACTATT-T-AGACCAAAT-
* * * * * *
41677 GATCGTCTTAAATATT--TAATGAACT-G-ATGTTATAGAAGAAT--TCGTAA--AAGTTTG-TC
366 GAT-G-C---GAT-TTCCCAA-GCA-TGGAATGTT-TCGAAAAATGCTCG-AAGGAA--TGGATC
* * *
41733 AAGT-TCGGA-AG
419 --GTCTTGAATAC
* * ** ** * * * * **
41744 TTTGACTGAGAA-CTAAGAGAGAAACTATTCTCACCTAAATAAGTTT-TTAA-TTCAAAAGACCC
1 TTT-A-AG-GAATCGAAGTTA-AAAAGA-ACT--CGT-AA-AAGTTTGTCAAGTTCGAAAG-TTC
* ** *** * * * *
41806 AAAGTTGTTTA-CAA-AATGACAA-ATATT-TAGACC-AAATGA-TTCGATTTCCCAA-GCATGG
56 --GGCCGAGAACCAAGAAAGA-AACA-ATTCT-CACCTAAATAAGTT---TTT---AATTCA---
* * * * * * * *
41864 AATGTTCGAAAAATTG-CT-CGAAGGAATGGTTCGTCTTGAA-TACTTTATGGAACAAAAGTTTG
107 AA-G-ACCAAAAGTTGTTTAC-AA--AA----T-GAC---AACTA-TTTA--GACCAAATG-ATG
* * ** * * ** * * ** * *
41926 TCAAGTTCGAAAG-ATCGACCAAGAGCAAAGAAAAACAATT-CGCGCATAAAT--AACAT-TT--
155 -CGATTTCCCAAGCATGGA--ATGTTC---G--AAA-AATTGCTCGAAGGAATGGATCGTCTTGA
* * ** * * *
41984 -TAATTTAAAGAA-CATAAGTTTTTTTTATAAAATGACAACTATTTAGAACA-ATTGATGCGATT
211 ATACTTTAAGGAACCA-AAG------TTATAAAA-G--AACT-CGTA-AA-AGTTTG-T-CAAGT
* * ** * * * *** * * *
42046 TCCCGAACATGGAAT-GTTCAAAAAATTACACGA-AGGAATGGATCGTCTTGAATACTTTAAAGA
261 T--CGAA-A--G-TTCG-ACCGAGAA--CCAAGAGA-GAAACAAT--TC-T---CAC-CTAAA-T
*** * * * ** *
42109 AAGCGAAGTTAA--AAAAGAACTCGTAAAACTT-TGT-CAACTTCGA-AAGCT-TGGCTGAGAAC
308 AA--GTTTTTAATTCAAAG-AC-C--AAAAGTTGTTTACAAAAT-GACAA-CTAT---TTAG-AC
* ** * ** ** ** * * * *
42168 CAAGAGAGAAACTATTATCACCAAAAAAAGTTTTTAGTTCAAAGACCGAATG-TTGTTTATA-AA
361 CAA-A-TGATGCGATT-TC-CCAAGCATGGAATGT--TTCGAA-A---AATGCTCG---A-AGGA
* * *
42231 ATGACAAC-TATTTAGACCAAATGATGC
412 ATG-GATCGT-CTT-G----AAT-A--C
* * *** * *
42258 GATTTCCTAAGCAA-GGAATGTTTAGAAAATTTCTCG-AAGGAA--TGGATC--GTCTTGAATAA
1 ---TT--TAAGGAATCGAA-G-TTA-AAAAGAACTCGTAA--AAGTTTG-TCAAGT-TCG-A-AA
* * * * *** * * *** * *
42317 TTTATGGAACCGATGTTATA-AAAGAACTCATAAATGTTTGTCAACTTCGTAAG-TTTGACTTTG
52 GTT-CGG--CCGA-G--A-ACCAAGAA---AGAAACAATTCTCACCTAAATAAGTTTTTA-ATT-
* * * * ****
42380 GACAAAGA-GAGAAA-TTATTCTCACCTAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTAC
105 --CAAAGACCA-AAAGTTGTT-T-A-CAAAATGA-CAACTATTT---AGACC-AAA--TG-----
* * *** ** * * *
42443 AAAACGACAATCTATTTAGAAAAATTGATGTGATTTCCCAAGAATTGAATGTTTGAAAAATTACT
152 ---ATG-CGA--T-TTCCCAAGCATGGA-ATG--TT--C--GAA---AA--ATTG--------CT
* * * * * * * * *
42508 CGAAGGTATAGATCGTTTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTTGTAAAGGTTTT
190 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * * * *
42573 TGAAGTTCGGAAGTTTGGTCC-AAAACCTAGAGAGAAACTATTATCACCTAAATAAGTTTTTAAT
255 TCAAGTTCGAAAG-TTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAAT
* *** * *** *
42637 TCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAACCAAAGCGATTTCCTGGGCT
319 TCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCA
* * *
42702 TGAAATG-TTCAAAAAATTGCTCGAAGGAATGTATCGTCTTGAATAC
384 TGGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * * * * ** *
42748 TTTAAGCAACCAAAGTTATAAAATAAGTCGTAAAAGTTTTTTAACTTCGAAAGTTGGGCTTACAA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* *
42813 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * * *
42878 TTACAACTA-TTAGACCGAATGATGCAATTTCTCGAGCATCGAATGTTCGAAAATTTG-TCAAAG
130 TGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * * * * *
42941 GAATAGATCGCCTTGAATACTTTAAGGAATCGAAGTTATGAAGGAACTTGTATAAGTTTTTCAAG
195 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * * * *
43006 TTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGGAAA
260 TTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT-CAAA
* * * * * *
43071 -ACCAAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGAC
324 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
* * ** * * *
43135 TG-TACAGAAAATTTTTTGAAGGAATGTATCGTCTTGAATTC
389 TGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
43176 TTTAATGAA-CGAAAGCTATAAAAGCACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCGGCCGAGA
1 TTTAAGGAATCG-AAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * *
43239 TCCAGGAAAGAAACAATTCTCACATAAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACACA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
** * *
43304 ATGACAACTATTTAGACCAAATGATATGATTTCCCAAGCATGAAATGTT-TAGAAAATTGCTCGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGA
* *
43368 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAATTTATAAAAGAACTCGAAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * *
43433 ACTTCGAAAGTTCGGCCCA-AAGCCAAGAGAGAAACAATTCTCACCTAAATTAGTTTTTAATT--
258 AGTTCGAAAGTTCGACCGAGAA-CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * *
43495 -----C-AAAG--G----C--CA--A-AACTATTTAGACCAAATGATGCGATTTCTCGAGGATTG
322 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCA-TG
*
43543 G-ATG-TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
386 GAATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
43586 TTTAAGGAATCAAAGTTATGAAAGAACTCGTAAAAGTTTTTCTAGTTTGTAAA-TTCGGCCG-CA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCG-AAAGTTCGGCCGAGA
* * * * *
43649 A--AAG--CGAAACAATTCCCACCTAAATAAGTTTTTAATTGAAAAACCAAAAG-TATTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * *
43709 ATGACAACTATTTAGACCTAATGATGTGATTTCCCAAGTAT-GAACTGTAT-GAAAATTTGCTCG
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA-TGT-TCGAAAAATTGCTCG
* * * * *
43772 AAGGAATGAATCATCTTAAATACTCTAAGGAA-CAAATGTTTTAAAAGAACTCGTAAAAGTTTGT
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA-GTTATAAAAGAACTCGTAAAAGTTTGT
* * * *
43836 CAAGTTCGAAAGTTCGATCGAGAACTAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATT
256 CAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATT
* ** * * * *
43900 CAAACACCTGAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTTATGCGATTTCCCAAGTA
320 CAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCA
* * *
43965 TGGAATGTTT-GAAAATTGCTCGAAGGAATGGACCGTGTTGAATAC
384 TGGAATGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
44010 TTT-AGTGAA-CAAAATTTATAAAAGAACTTGTAAAA-TTTGTCAAGTT-TAATGTTCGACTGAG
1 TTTAAG-GAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAG
* * *
44071 AACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAATTCAAAGACCAAAA---G--T----
63 AACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * * *
44127 --T------T-TTTAGACCGAATGATACGATTTTCCAAGCATGTATTGTTCGAAAAACTGCTCGA
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
*
44183 AGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * ** *
44247 AGTTCGGAAGTTCGACAGAGAACCAAGAGAGAAACAATTCTCAGATAAATAACATTTTT-ATTCA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCA
* * * * * *
44311 AAGACCAAAAGTTGTTTACAAAATAACAATCTATTTAGAACAATTTATGCGATTTCCTAAGTATG
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* * * *
44376 GAATGTTT-GAAAATTGCTCAAAAGAATGGATCGTGTTGAATAC
386 GAATGTTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * **
44419 TTTAATGAA-CAAAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTT-TAACGTTCAACCGAGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * *
44482 ACCAAGAAAGAAACAATTCTCACATAAAGAA-TTTGTTAATTCAAAGAACAAAACTTGTTTACAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTT-TTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * *
44546 AATCACAACTATTTAAACGAAATGATGCGATTT-CCAAGCATGTAATGTTCGAAAAACTGCTCGA
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * *
44610 AGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* *** * ** *
44675 AGTTCGGAAGTTCGGTTGAGAACCAAGAGAGAAATAATTCTCAGATAAATAACATTTTT-ATTCA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCA
* * * * * * *
44739 AAGACCAAAAGTTGTTTACAAAATGACAATCTATTTGGAACAATTTATGTGATATCCCAAGCATA
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
*
44804 GAATG-TTC-AAAAATTGCTCGAAGGAATGGATCGTGTTGAATAC
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
44847 TTTATGGAA-CTGAAGTTAAAAAAGAACTCGTAAAAGTTTATCAACTTCGAAAGTTTGGCTGAGA
1 TTTAAGGAATC-GAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * * * *
44911 ACCAAGAGAGGAACTATTATCACATAAATATGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** * ** *
44976 ATGAGAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATTTTCGAAAAATTG-TACGA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-CGA
** * * * * *
45040 AGGAATGGATCGTCTCAAATACTTTAATGAACTAACGTTATAGAAGAATTCGTAAAAGTTTGTCA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * *
45105 AGTTC-ATAAATTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCA
258 AGTTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * * **
45169 AAGACCCAAAGTTGTTTACAAGATGGCAAATATTTAGACCAAATGATTTGATTTCCCAAGCATGG
322 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
*
45234 AATG-TTCGAAAAATTTCTCGAAGGAATGGATCGTCTTGAATAC
387 AATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* *
45277 TTT-----AT----G-------GAA--C--AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * * ** * * * *
45322 AAAGAAA-ATACAATTCTCGCATAAATAACATTTTAATTTAAAGAACATAAGTTTTTTTTACAAA
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAA
* * *
45386 ATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAA-CATGGAATGTTCGAAAAATTGCACG
129 ATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAAAAATTGCTCG
* * * *
45450 AAGGAATAGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCATAAAA-TTTGTC
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * * * *
45514 AACTTCGGAAGTT-TAGCCGAGAACCAAGAGAGAAACTATTATCACCAAAATAAGTTTTTAGTTC
257 AAGTTCGAAAGTTCGA-CCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
* * * * * **
45578 AAAGACCGAATGTTGTTTAAAAAATGACAACTATTTAGACCAATTGATGCAATTTCCTGAGCATG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* * * * *
45643 GAATG-TTCAGAAAATTACTTG-A-CAATGGATCGTCTTGAATAA
386 GAATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *****
45685 TTTATGGAACCGATGTTATTAAAGAACTCAG-AAAAGTTTGTCAACTTCGGAAGTTCGAATTTGA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * ** *
45749 ACAAAGAGAGAAATTATTCTCACCTAAATTAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * *
45813 ATGACAACTATTTAGACCAAATGATGCGATTTCTCTAGTATGGAATGTTCG-AAAATTGATTGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * *
45877 GGAATGGATCGTCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAAATTTTGTCAA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * * *
45942 GTTCGAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACAC-AAATAACTTTTAAATTTAA
259 GTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCAC-CTAAATAAGTTTTTAATTCAA
* * * *
46006 AGACCAAAACTTGTTTACAAAATGACATA-TATTTAGACCGAATGATTCGATTTCCTAAGCATGG
323 AGACCAAAAGTTGTTTACAAAATGACA-ACTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
46070 AATG-TTC-AGAAAATGGCTCGAAGGAATGGATCGTCTTGAATAC
387 AATGTTTCGA-AAAAT-GCTCGAAGGAATGGATCGTCTTGAATAC
* *
46113 TTT-----AT----G-------GAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAAAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * * *
46158 CAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGTTTTTTACAAAAT
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * * **
46223 GAAAATCTATTTAGAACAATTGATGCAATTTCCCGAA-CATGGAAGGTTCGAGTAATTGCAT-GA
131 GACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAAAAATTGC-TCGA
* * ** * * *
46286 AGGAATGGATCGTCTTCG-ATACTTTATGGCACTGAAGTTAAAAAATAACTCATAAAAGTTTGTC
193 AGGAATGGATCGTCTT-GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * *
46350 AACTTC-AGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAATT
257 AAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATT-CTCACCTAAATAAGTTTTTAATT
* * * * ***
46413 CAAAGAACAAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTGAGCAT
320 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCAT
* * * *
46478 GGAATG-TTCAAAAAATTGCTCAAAGGAATGGATTGTCTTGAATAA
385 GGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * * * *
46523 TTTATGG-ATCTAAAGTTATAAACGAACTTGTAAAAGTTTGTCAACTTCGGATGTTCGACCGTGA
1 TTTAAGGAATC-GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* ** * *
46587 ACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTTCAAA
64 ACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * *
46652 ATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGAAATGTTCAAAAAATTGCTTGAA
129 ATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * **
46717 GGAGTGTATCGTCTTAAATACTTTAATGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCGA
194 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC-A
* * * * * *
46782 A-CTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * *
46846 AGGCCAAAAGTTATTTACAAAATGACAATCTATTTAGAAC-AAT--T--GATTTCCCGAGCATGG
323 AGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGG
* * *
46906 AATG-TTCGGAAAATTGCGCGAAGGAATGGATCATCTTGAATAC
387 AATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * **
46949 TTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTTGTAAGTTCTACCGAGAA
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
** * * * * * * *
47014 CTTAGAGAGGAACTATTATCTCCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAACA
65 CCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * ** * * *
47079 TTACAACTATTT-GAACGAAATAATATGATTT-CCAGAGCATGGATTGTTC-AGAAAATGGTTCG
130 TGACAACTATTTAG-ACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGA-AAAATTGCTCG
* * * * **
47141 GAGGAATGAATCATCTTGAATACTTTAAGGAA-TAAAACTATAAAAGAACTCGT--AA-------
192 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * *
47196 AAG-T------TT-GACCGAGAACCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTATTTCA
257 AAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * * * *
47253 AAGACCAAAAGTTGTTTACAAAACGACAATCTATTTAGAACAATTGTTGCGATTTCCCAAGAATT
322 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* * *
47318 GAATGTTT-GAAAAATTGCTCGAAGGTATAGATCGTCTTGAATAA
386 GAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
47362 TTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTC-AGAAGATCAGTCC-AG
1 TTTAAGGAATCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTC-GGCCGAG
* * ** * *
47425 AACCTAGAGAGAAATTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAA
63 AACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* *** * *** * * *
47490 AATTACAACTATTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGA
128 AATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * * * * *
47555 AGTAATGTATCATCTTAAATACTTTAAGGAATCGAAGTTATAAAATAAGTCGTAAAAGTTTGTTA
193 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * * *
47620 ACTTCGGAAGTTCGGCCTAGAACCAAGAGAGGAACTATTCTCACCTAAATAAGTTTTTAATTCAA
258 AGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * * * **
47685 AGACCAAAAGTTGTTTACAAAATTAAAACTA-TTAGACCGAATGATGCAATTTCTCGAGCATCAA
323 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
* *
47749 ATG-TTCGAAAAAT--TGGAAAAGGAATGGATCGCCTTGAATAC
388 ATGTTTCGAAAAATGCTCG--AAGGAATGGATCGTCTTGAATAC
* * * *
47790 TTTAAGGAATCGAAGTTATGAAAGAACTCGTATAAGTTTTTC-AGATTC-ATAAGTTCGGCCAAG
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAG-TTCGA-AAGTTCGGCCGAG
* * *
47853 AACCAA-AAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGAAAAACCAAAAGTAGTTTACA
63 AACCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * * *
47917 AAATAACAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTATACAGAAAATTTG-TC
127 AAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC-GAAAAATTGCTC
* * ** * *
47981 GAAGGAATGTATCGTCTTGAATACTTTAATGAATGAAAGTTATAAAAGCACTTGTAAAAGTTTGT
191 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * * *
48046 CAAGTT-TAATGTTCGGCTGAGATCCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAATTC
256 CAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
** * *
48110 AAAGACCAAAAGTTGTTTTGAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATG
321 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG
* *
48175 GAATG-TTCAGAAAATTGCTCGAAGGAATGGATCTTCTTGAATAC
386 GAATGTTTC-GAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
* *
48219 TTT-----AT----G-------GAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAAC
1 TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
* * * * *
48264 CAGGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAA
66 CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAA
* * * * * *
48328 TGACAATCTATTTAGAACAATTGATGCAATTTCCCGAA-CATGGAAGGTTC-AAGTAATTGCACG
130 TGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAA-AAATTGCTCG
* * * * * *
48391 AAGGAATGGATCGTCTTCG-ATACATTACGGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGT
192 AAGGAATGGATCGTCTT-GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * *
48455 CAACTT-TAGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAAT
256 CAAGTTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATT-CTCACCTAAATAAGTTTTTAAT
* * * * * *** *
48518 TCAAAGAACAAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTCTTGAGCG
319 TCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCA
* * * ** *
48583 TGGAATG-TTCAAAAAATTGTTTGAAGGAATGGATTTTCTTGAATAA
384 TGGAATGTTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
48629 TTTATGGAACCGAAGTTATAAAAAAACTCGTAAAAGTTT-TACAAGTTCGGAAGTTCGTCCAAGA
1 TTTAAGGAATCGAAGTTA-AAAAGAACTCGTAAAAGTTTGT-CAAGTTCGAAAGTTCGGCCGAGA
*
48693 ACCAAGAGAGAAACAATTCTCA-CTAAAT
64 ACCAAGAAAGAAACAATTCTCACCTAAAT
48721 CAAATTTAAT
Statistics
Matches: 26335, Mismatches: 5489, Indels: 4874
0.72 0.15 0.13
Matches are distributed among these distances:
404 208 0.01
405 474 0.02
406 82 0.00
407 227 0.01
408 731 0.03
409 920 0.03
410 2359 0.09
411 907 0.03
412 418 0.02
413 241 0.01
414 29 0.00
415 18 0.00
416 6 0.00
417 6 0.00
418 6 0.00
419 7 0.00
420 13 0.00
421 21 0.00
422 26 0.00
423 50 0.00
424 273 0.01
425 1061 0.04
426 1026 0.04
427 2067 0.08
428 2228 0.08
429 3654 0.14
430 3188 0.12
431 1293 0.05
432 604 0.02
433 253 0.01
434 349 0.01
435 38 0.00
436 33 0.00
437 42 0.00
438 44 0.00
439 51 0.00
440 35 0.00
441 32 0.00
442 30 0.00
443 18 0.00
444 23 0.00
445 29 0.00
446 55 0.00
447 73 0.00
448 42 0.00
449 77 0.00
450 49 0.00
451 63 0.00
452 55 0.00
453 40 0.00
454 47 0.00
455 54 0.00
456 34 0.00
457 26 0.00
458 17 0.00
459 12 0.00
460 13 0.00
461 29 0.00
462 14 0.00
463 26 0.00
464 28 0.00
465 40 0.00
466 31 0.00
467 39 0.00
468 52 0.00
469 74 0.00
470 40 0.00
471 42 0.00
472 45 0.00
473 32 0.00
474 59 0.00
475 60 0.00
476 25 0.00
477 30 0.00
478 38 0.00
479 22 0.00
480 40 0.00
481 74 0.00
482 67 0.00
483 54 0.00
484 66 0.00
485 98 0.00
486 90 0.00
487 59 0.00
488 34 0.00
489 99 0.00
490 64 0.00
491 30 0.00
492 48 0.00
493 35 0.00
494 37 0.00
495 40 0.00
496 40 0.00
497 47 0.00
498 42 0.00
499 41 0.00
500 52 0.00
501 23 0.00
502 24 0.00
503 15 0.00
504 20 0.00
505 8 0.00
506 20 0.00
507 19 0.00
508 17 0.00
509 20 0.00
510 14 0.00
511 30 0.00
512 38 0.00
513 42 0.00
514 39 0.00
515 37 0.00
516 27 0.00
517 19 0.00
518 22 0.00
519 11 0.00
520 12 0.00
521 9 0.00
522 3 0.00
523 16 0.00
524 8 0.00
525 16 0.00
526 9 0.00
527 10 0.00
528 6 0.00
529 12 0.00
530 11 0.00
531 6 0.00
532 1 0.00
533 9 0.00
534 5 0.00
535 4 0.00
536 6 0.00
537 8 0.00
538 3 0.00
539 2 0.00
540 20 0.00
541 5 0.00
542 3 0.00
543 3 0.00
545 5 0.00
546 14 0.00
547 2 0.00
548 4 0.00
550 1 0.00
551 1 0.00
552 2 0.00
554 4 0.00
555 2 0.00
557 4 0.00
559 3 0.00
560 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (429 bp):
TTTAAGGAATCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAAC
CAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
GACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGG
AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGT
TCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGA
CCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG
TTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
Found at i:16586 original size:625 final size:627
Alignment explanation
Indices: 14030--29188 Score: 9309
Period size: 625 Copynumber: 23.7 Consensus size: 627
14020 GATCATATCA
* * * * * * **
14030 TTTAACGAATAGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGTTGAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
14095 CCAAGAGAGAAACTATTATTACCTAAATAAGTTTTTAATTCAAAGATAGAATGTTGTTTATAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-A-T------T---A-----TTTACAAAA
* * ** * *
14160 TGACAA-CTATTTAGACCAAATGATGTGATTTCTTGAGCACGGAATGTTC-AGAAAATTGCTCAA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGA-AAAATTGCTCGA
* * * * *
14223 AGGAATGGATCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCGTAAAAGTTTGTCA
179 AGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * ** * * **
14288 ACTTCGGAAGTTCAACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAA
244 AGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
*
14353 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGCA
309 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTC-CAAGCATG-A
** * * *
14418 ATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTAAATACTTTACGGAACCAAAGTTATAAAA
372 ATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAA
** *
14483 GAACTCGTAAAAGTTTGTCAAGTT-TGAAAGTTCGGTCGAGAACCAAGAAAGAAACAATTCACAC
436 GAACTCGTAAAAGTTTGTCAAGTTCT-AAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCAC
* * *
14547 CTAAATAAGTTTTTAATTCAAAGATCAAAAGTGGTTTACAAAATGACAACTATTTAG-CCATAAT
500 ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AAT
* * * * ** * *
14611 GATGCAATTTCCCAAGCATGG-ACGTTCGGAAAATGGCTCGAAGGAATGGATTGTATTGAATGC
564 GATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
** * * * * * * *
14674 TTTAAGGAATAAAAGATATTAAACAACTCGTAAAAATTTGTCAAGTTCAAAAGTTCGACCGAAAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
14739 CCAAGA-AGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACAAAAAGTTGATTACAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-A-TT----------A--T--TTACAAAA
** * ** ** * *
14803 TGCCAATCTATTTAGAACAAATGATAAGATTTCCCTAGCATGGAATGTTTGGAAAAA-TGAGT-G
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATG-TTCGAAAAATTG-CTCG
* * * * *
14866 AAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTCA-ACAAAGAACTCTTAAATGTTTGT
178 AAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATA-AAAGAACTCGTAAAAGTTTGT
* * ** * *
14930 CAAGTTCGAAAGTTCTG-TCGAGAACCTAGAGAGGTACTATTATCACCTAAATAAGTTTTTAATT
242 CAAGTTCGAAAGTTCGGCT-GAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * * * **
14994 CGAAGACCAAAAGTTGTTTATAATATGACAACTATTT-GAAGCAAATGATACGATTTCCAAAGCA
306 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGTGATTTCC-AAGCA
* ** * *** * *
15058 TAGATTGTTTGGAAAATGGCTGGGAGGAATGGATCGTCTTGAATACTTTAAGAAATAAAAGTTAT
369 T-GAATG-TTCAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTAT
* * ** ** *
15123 AAAATAACTCATAAAAGTTTGTCAAGTTCGGAAGTTC-AGCCGAGAACCTTGAACGAAACAATTC
432 AAAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGA-CCGAGAACCAAGAAAGAAACAATTC
* * * *
15187 TTACATAAATAAGCTTTTAATTCAAAGACCAAAAGTCGTTTACAAAATGACAATCTATTTAGAAC
496 TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACC
* * * * * * *
15252 AATTGATGCGATTTCCCGAGAATGGAATGTTTGAAAAATTGCTCGAAGGTATAGATCGTCTTGAA
560 AAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAA
*
15317 TAA
625 TAC
* * * * * *
15320 TTTAAGGAACCGAAATTA-AAGAAGAACTCGTAAATGTTTTTTAAGTTCGAAAGTTCAGCTC-AG
1 TTTAAGGAATCGAAGTTATAA-AAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC-CGAG
* * * *
15383 AACCTAGAGAGAAACTATTATCACCTTAATAAGTTTTTTAATTCAAAGACCAAAAGTTTTTTTAT
64 AACCAAGAGAGAAACTATTCTCACCTAAATAAG-TTTTT-ATT-----------A-----TTTAC
* * * * *
15448 AAAATGATAA-CTATTTAGACCAAATGATTCAATTTCCTA-AGCTTGGAGTGTTC-AGAAAATTG
111 AAAATGAAAATCTATTTAGACCAAATGATGCGATTTCC-AGAGCATGGAATGTTCGA-AAAATTG
* * * *
15510 CTC----GAA-GGATCTTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAAGTCGTAAAAGTT
174 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * * * * *
15570 TGTTAACTTTGAAAGTTCAGCCT-AGAACCAAAAGAGAAACTATTCTCACCTAAATATGTTTTTA
239 TGTCAAGTTCGAAAGTTC-GGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTA
* * * **
15634 ATTCAAAGACCAAAAGTTGTTTACAAAATTACAACTATTTAGACCAAATTATGCGATTTCTCGTG
303 ATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTC-CAAG
* * *
15699 CATGGAATGTTCGGAAAATTGCTTAAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGT
367 CAT-GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAAAAGT
* * * *
15763 TATGAAAGAACTCATAAAAGTTTTTCAGGTTCGT-AAGTTCGACCGAGAACCAA-AAGAGAAACA
429 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-TAAAGTTCGACCGAGAACCAAGAA-AGAAACA
* * * *
15826 ATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTAAAAAATGACAACTATTTA
492 ATTCTCACATAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTA
* * * * *
15890 GACCTAATGATGTGATTTTCCAAGCATGGACTGTAC-AGAAAATTGCTCGAAGGAATGG-TC--C
556 GACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATC
15951 TTGAATAC
620 TTGAATAC
* **
15959 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTCCGAAAGTTCAACCGAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * * *
16024 CAAAGAAAGAAACAATTCTTACATAAATAACTTTTT-TT-TTTACAAAATGAAAATCTATTTAGA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTATTATTTACAAAATGAAAATCTATTTAGA
* * * * *
16087 ACAATTGATGCGATTTCCCGAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTG
131 CCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * **
16152 AATTCTTTATGGAAAAAAAGTT-TAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC
196 AATACTTTAAGGAATCAAAGTTAT-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC
* * * * *
16216 TGAGAACCAATAGAGAAACAATTCTCACCTAAATAAGGTTTTAATTGAAAAACCAAAAGTAGTTT
260 TGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
16281 ACAAAATGACAACTATTTAAACCTAATGATGTGATTTTCCAAGCATGAATTGTACAATAAATTAC
325 ACAAAATGACAACTATTTAGACCAAATGATGTGA-TTTCCAAGCATGAA-TGTTCAA-AAATTGC
* * * *
16346 T-AAAGGAATGGATCGTCTTGAATAATTTAATGAA-AAAAATTATAAAAGAACTTGTAAAAGTTT
387 TCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTT
* ** *
16409 GTCAAGTT-TAAAGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAGGATTTTTTAAT
452 GTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAAT
* *
16473 TCAAAGACCAAAAGTTGTTTACAAAATGATAACTAATTAGACCAAATGATGCGATTTCCCAAGCA
517 TCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCA
* * * *
16538 TGAAATGTTCGAAAAATTCCTCGAAGGAATGGATCGTCTTGCATAC
582 TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * *
16584 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTC-AGAAGTTCGACCGTGA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGA
* * ***
16648 ACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCACAGACAAAAGTTGTTTACAAAA
65 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT-ATTTACAAAA--TG-----AAAA
* *
16713 TAACAACTATTTAGACCAAATGATGCGATTTCTAGAGCATGGAATGTTCGAAAAATTGCTTGAAG
121 T-----CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *
16778 GAATGGATCGTCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAG
181 GAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * * * *
16843 TTTGAAAGCTC-GATCGAGAACCAAGAAAGAAACAATTCACACCTAAATAAGTTTTTAATTCAAA
246 TTCGAAAGTTCGGCT-GAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* *
16907 GACCAAAAGTAGTTTACAAAATGACAACTATTTAGA-CATAATGATGCGATTTCCCAAGCATGGA
310 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-AATGATGTGATTT-CCAAGCAT-GA
* * * * * * *
16971 TTGTTTAGAAAATGGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAATAAAAGTTATAAAA
372 ATGTTCA-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAA
* * *
17036 GAACAACTCATAAACGTTTGTCAAGTT-TGAAAGTTCGACCGAGAACCAAGAAATAAACAATTCT
436 G---AACTCGTAAAAGTTTGTCAAGTTCT-AAAGTTCGACCGAGAACCAAGAAAGAAACAATTCT
* * * * *
17100 CTCATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGCCAATCTATTTAGAACA
497 CACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCA
* * * ** * *
17165 AATGATACGATTTCTCGAGTGTGGAATGTTGGGAAAATTG-TGCGAAGGAATGGATCATCTTGAA
561 AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCATCTTGAA
17229 TAC
625 TAC
* * * * ** *
17232 TTTAAGGAATCGAAGTCA-ACAAAGAACTCTTAAATGTTTGTCAAGTTTGAAAGTTTTGTCGAGA
1 TTTAAGGAATCGAAGTTATA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* ** * * * ***
17296 ACCTAGATTGGAACTATTATCACCTAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTATAAA
65 ACCAAGAGAGAAACTATTCTCACCTAAATAAG-TTTTTATT-ATTTA-CAAAA--TG-----AAA
* * * * * *
17361 ATGACAACTATTT-GAACCAAATGATACAATTTCCAGAGCATGGATTGTTCGAAAAATGGTTCGG
120 AT-----CTATTTAG-ACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGA
* * *
17425 AGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCATAAAAGTTTATCA
179 AGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * *
17490 AGTTCGGAAGTTCGG-TCGAGAACCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTAATTCA
244 AGTTCGAAAGTTCGGCT-GAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * * *
17554 AAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAACTTATGTGATTTCCTGAGAATG
308 AAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATTTCC-AAGCAT-
* * * * * * * * * ** *
17619 GGATGTTCGAAAAGTTGTTCAAAGGTATAGATCGTGTTAAATAATTAAAGGAACCGAAGTTAAAA
370 GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAA
* * * * * * * * * * *
17684 AAGAACTCGTAAAGGTTTTTGAAGTTCGAAAGTTCGGCCCAAAACCTAGAGAGAAACTATTATCA
434 AAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA
* * * * *
17749 CCTAAATAAGTTTTTTAATTCAAAGACCGAAAGTTTTTTATAAAATGAGAACTATTTAGACCAAA
499 CATAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAA
** *
17814 TGATGCGATTTCCTGAGCTTGGAATGTTC-AGAAAATTGCTC----GAA-GGATCATCTTGAATA
563 TGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATA
17873 C
627 C
* * * * * *
17874 TTTAAGGAATCTAAGTTATAAAAGAAGTCGTAAAAGTTTGTTAACTTCGAAAGTTCAGCCTAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * ***
17939 CCAAGAGAGTAACTATTCTCACCTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTCACAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTT-TATT-ATTTA-CAAAA--TG-----AAAA
* ** *
18004 TTACAACTATTCAGACCAAATTG-TGCGATTTCTC-GAGCATGGAATGTTCGGGAAATTGCTCAA
121 -T----CTATTTAGACCAAA-TGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGA
* ** * * * *
18067 AGGAATGGATCGTCTTGAATACTTTACGGAATCGTAGTTATGAATGAACTCGTAAAGGTTTTTCA
179 AGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * ** * *
18132 GGTTCGTAAGTTCTACCGAGAACCAA-AGGAGAAACAATTCTCACCTAAATAAG-TTTTAATTGA
244 AGTTCGAAAGTTCGGCTGAGAACCAAGA-GAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * * *
18195 AAAACCAAAAATAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTTCCAAGCATGG
308 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGA-TTTCCAAGCAT-G
* * *
18260 ACTGTAT-AGAAAATTGCTCAAAGGAATGGATTGTCTTGAATACTTTAATGAACAAAAGTTATAA
371 AATGT-TCA-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAA
* * *
18324 AAGAACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCAACCGAGAACCAATAAAGAAACAATTCTCA
434 AAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA
* * * *
18388 GATAAAGAATTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAT
499 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAT
* * * * *
18453 GATGAGATTTCCTAAGCTTGGAATGTTC-AGAAAATTGCTGGAAGGAATGGTTCATCTTGAATAC
564 GATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * *
18517 TTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGGCCTAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
***
18582 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACATAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT-ATTTA-CAAAA--TG---A-A-AA
* * * ** *
18647 TGGCAACTATTTAGACTAAATGATGTGATTTCTAGAGCATGGAATGTTCTTAAAATTGCT-AAAG
121 T-----CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* *
18711 CGAATGGATCGTCTTGAATAGTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAA
181 -GAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * *
18776 GTTC-AGAAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAA
245 GTTCGA-AAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * *
18840 AGACCAAAAGTAGTTTAAAAAATAACAACAATTTAGACCTAATGATGTGATTTCCCAAGCATGGA
309 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTT-CCAAGCAT-GA
* ** * *
18905 CTGTATGGAAAATTGCTTGAAA-GAATGGATCGTCTTGAATACTTTAATGAACAAAAGTTATAAA
372 ATGT-TCAAAAATTGC-TCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAA
* * * * *
18969 AGAACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCGATCGAGAA-CATAGAAAGAAATAATTCTAA
435 AGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCA-AGAAAGAAACAATTCTCA
* ** *
19033 CATAAATAA-TTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAATAATT
499 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAT
* * * *
19078 GATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTC
564 GATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * **
19142 TTTATGGAA-CAGAAGTTA-AAAAGGTACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGGCTAAG
1 TTTAAGGAATC-GAAGTTATAAAA-GAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAG
* ** * *
19205 AACCAATAGAGAAACTATGATCACCTAAATAAGTTTTTAATTCAATGTCCAAAAGTTGTTTATAA
64 AACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT--ATTTACAAAA--TG-----AA
* * * **
19270 AATGACAACTATTTAGACCAAGTGAAT-CGATTTCCTGAGCTTGGAATGTTTCG-AGGATTGCTC
119 AAT-----CTATTTAGACCAAATG-ATGCGATTTCCAGAGCATGGAATG-TTCGAAAAATTGCTC
* * * *
19333 GAAGGAATGGATCATCTTGAATACTTTAAGGAATCAAAGTTATAAAATAACTTGTAAAAGTTTGA
177 GAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * * *
19398 CAACTTTGAAAGTTTGGGC-GTGAACCAAGAGAGGAACTATTGTCACCAAAATAAGTTTTTAATT
242 CAAGTTCGAAAG-TTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* *
19462 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCAT
306 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTC-CAAGCAT
* * ** *
19527 GGAATGTTTGAAAAATTG-TTAAAGGAATGGATCACCTTGAATACTTTTAAGGAATC-GAAGTTA
370 -GAATG-TTCAAAAATTGCTCAAAGGAATGGATCGTCTTGAATAC-TTTAAGGAA-CAAAAGTTA
* * * * * * *
19590 TGAAAGAGCTCGTATAAGTTTTTCAGGTTCGT-AAGTTCGGCCAAGAACCAA-AAGAGAAACAAT
431 TAAAAGAACTCGTAAAAGTTTGTCAAGTTC-TAAAGTTCGACCGAGAACCAAGAA-AGAAACAAT
* * * * * *
19653 TCTCACCTAAATAAGTTTATAATTGGAAA-ACCAAAAGTAGTTTACAAAATAACAACCATTTAGA
494 TCTCACATAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGA
* * * * * * *
19717 CCTAATGATGTGATTTCCCAAGCATAGACTGTACAAAAAATTGGTCGAAGGAATGGATCATCTTG
558 CCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTG
19782 AATAC
623 AATAC
* * * * * * * *
19787 TTTAATGAA-CGAAAGTTATAAAAGCACTTGTAAAAGTTTTTCAACTT-TAAAGTTCGACCAAGA
1 TTTAAGGAATCG-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * ** * * * *
19850 ACCAAGAAAGAAACAATTCTCAGATAAA-GAGTTTTT-TTAATT-CAAAGATAAAAAGT-TGTTT
65 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTATTATTTACAAA-ATGAAAA-TCTATTT
* * ** * ***
19911 --A-CAAAAG-TTCG--GCCCA-A--A-GGCAACTG--AGAAATAATT-CTC-ACCTAA---ATT
128 AGACCAAATGATGCGATTTCCAGAGCATGG-AA-TGTTCGAAA-AATTGCTCGAAGGAATGGA-T
* * * * * * * * * * * *** * * *
19959 AGT-TT--TTAATTCAAAG-ACCAAAACTATTTAGACGAAAT-GATGCGATTTTCTCGAGGATT-
189 CGTCTTGAATACTTTAAGGAATC-AAAGT-TATAAAAGAACTCG-TAAAAGTTTGTC-AAG-TTC
* ***** ** * * * * * * *
20018 GAATGTTCAAAAAATTGCTCGAAG-GACTGGATCATCTTGAAT-ACTTTAAGGAATCGAAGTTAT
249 GAAAGTTCGGCTGA--GAACCAAGAGA--GAAACA-ATT--CTCAC-CT-A--AAT--AAGTTTT
* ** ** ** ****** * * * * **
20081 GAA-AGAACTAGTAAAAGTT-TTTTTGGTTTG-TAAGT-TTGGCCGAGAACCAAAAGA-GAAACA
301 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT----TAG-ACCAAATGATG--TGA
* * * *** *** ** * * * *
20141 ATTCTC-A-CCTAAATAAGTT-TTTAATTGAAAAAACAAAAGTAT-TTACAAAATGACA-ACTAT
359 TTTC-CAAGCATGAAT--GTTCAAAAATTGCTCAAAGGAATGGATCGT-C---TTGA-ATACT-T
* * * * * * ** *** *
20201 TTA-GACCTAATGATGTGATTTCCCAAGCATGGACT-GTACGAAAAATTGCTCGAAGGAATGAA-
415 TAAGGAAC-AA--AAGT--TAT---AA--AAGAACTCGTA--AAAGTTTG-TC-AAGTTCTAAAG
* ** * * * ** * * * * *
20263 -TCGTCTTAAATACTTTAAGAAACAAA-TGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGG
466 TTCGACCGAGA-AC--CAAGAAAGAAACAATTCTCACATAA-----ATAAG-TT-T----TT---
* *** * **
20326 AAGTTCGATCGAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTTTATTCAAACACCAA
514 AA-TTC-A--AAG-ACCAA-A-AG---TTGTT-T-ACA-AAATGACA--ACTATT----------
* * *
20391 AAGTTGTTTACAAAATGACAATCTATTTAGAACAATTTTTGCGATTTCCCAAGTATGGAATGTTT
554 ---TAG---AC-------CAA---A--T-G----A----TGCGATTTCCCAAGCATGGAATGTTC
** * * * *
20456 G-AAAATTGCTTAAAGGAATGGACCGTGTTGAATTC
592 GAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * **
20491 TTTAA--AA-CAAAAGTTATAAAAGAACTTGTAAAAGTTT-TCCAAGTT-TAATA-TTCGATCGA
1 TTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGT-CAAGTTCGAA-AGTTCGGCCGA
* * * * * **
20550 GAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAATTCGA-AGACCAAAAGTTGTTTAC
63 GAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT--ATTTA-CAAAA--TG-----
* *
20614 AAAATCACAACTATTTAGACCAAATGATGCGATTTCCTA-AGCATGTAATGTTCGAAAAACTGCT
117 AAAAT-----CTATTTAGACCAAATGATGCGATTTCC-AGAGCATGGAATGTTCGAAAAATTGCT
* *
20678 CGAAGGAATGGATCGTCTTAAATACTTTAAGG-ATCAAAAGTTTTAAAAGAACTCGTAAAAGTTT
176 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
20742 GTCAAGTTCGAAAGTTTGGCCGAGAACCAAGAGAGAAATAATTCTCACATAAATAACATTTTT-A
240 GTCAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAA
* * * * * *
20806 TTCAAAGAACAAAAGTTGTTTACAAAATGACAATCTATTTGGAACAATTTATGCGATTTTCCAAG
304 TTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGTGA-TTTCCAAG
* * * **
20871 CATAGAATGTTCGAAAAATTGCTCGAAGGAATGG-T-G--TTGAATACTTTATGGAGCTGAAGTT
367 CAT-GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTT
* * * * * * * * *
20932 A-AAAAAAAGCTCGTAAAAGTTTGTCAACTTCAAAAGTTTGGCTGAGAACCAAGAGAGGAACTAT
430 ATAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAAT
* * * * * * *
20996 TATCACTTAAATATGGTTTTAATACAAAGACCAAAAGTTGTTTATAAAATGAGAACTATTTAGAC
494 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAC
** * ** * * * *
21061 CATGTGATGCAATTTCCTGAGCATGGAATGTTTGAAAAATTG-TGCGAAGGAATGGATCGTTTTA
559 CAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCATCTTG
21125 AATAC
623 AATAC
* * * * * ** * * *
21130 TTTAATGAA-CTGATGTTATAGAAGAATTCGTAAAAGTTTCTCAAGTTCGGTAGTTCGACTGGGA
1 TTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
21194 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT-----------A----TTTACAAA
*
21259 ATGACAAA--TATTTAGACCAAATGATTCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTC
114 ATGA-AAATCTATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTC
21321 GAAGGAATGGATCGTCTTGAATACTTT-----AT----G-------A-AA--C--AAAAGTTTGT
177 GAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * * **
21365 CAAGTTCGTAAGTTCGACTAAGAACAAAGA-AAAAACAATTCTCTCATAAATAACATTTTAATTT
242 CAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAA-TT
* * * * *
21429 C-AAG-CACATAAGTTTTTTTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGA
306 CAAAGAC-CAAAAG--TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATTT-CC-A
* * * * **
21492 A-CATGGAATGTTCAAAAAATTGCACGAAGGAATGGATTGTCTTGAATACTTTAAGGAGCCGAAG
365 AGCAT-GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAG
* * * * * ** *
21556 TTAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTTGGCCGAGAACCAAGAGTGAAACTA
428 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAA
* * * * * * *
21621 TTATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAATGGCAACTATTTAGA
493 TTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGA
** * *
21686 CCAAATGATGCGATTTCCTGAGCAAGGAATGTTC-ATAAAATTGCTCGAAGGAATGGATCGTCTT
558 CCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTT
* *
21750 GAAAAA
622 GAATAC
* * * * * * **
21756 TTTATGGAATCG-A-TTATAAAAGAACTCATAAAAGTTTGTCAACTTTGGAAGTTCGACTTTA-A
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC-CGAGA
* *
21818 ACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCACAGACAAAAGTTGTTTACAAAA
65 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT----------A----TTTACAAAA
* ** * *
21883 TGACAA-CTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTTGAAAAATTGCTTGAA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * * *
21947 GGAATGGATCGCCTTAAATACTTGAAGGAACCAATGTTATAAAAGAACTTGTAAAATTTTGACAA
180 GGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * ** ** * * *
22012 GTTCAAAAGTTC-GATAGAGAACCAAGAAAGAAACAATTAGCAGATAAATAACTTTTAAATTTAA
245 GTTCGAAAGTTCGGCT-GAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * *
22076 AAACCAAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGAT-TCGATTTCCCAAGTATGG
309 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGT-GATTT-CCAAGCAT-G
* **
22140 AATGTTCAGAAATTTGCTTGAAGGAATGGATCGTCTTGAATAC--T------------TTAT---
371 AATGTTCA-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAA
* * *
22188 GGAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCAC
435 AGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCAC
* * * * * *
22249 ATAAATAACTTTTTTATTTAATGGCCAAAAGTTGTTTACAAAATGACAATCTATTTAGAAC-AAT
500 ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAAT
* *
22313 --T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGCGAAGGAATGGATCATCTTGAATAC
564 GATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * * * * *
22373 TTTAAGGAACCCAAGTTAAAAAAGAACTTGTAAATGTTTTTCAAGTT-TAAAGTTCGGCCTAGAT
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
22437 CCAAGAAAGAAACAATTCTCACATAAACAATTTTTTAATTCAAAGACCAAAATTTGTTTACAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT-----------A----TTTACAAAA
* * * * * *
22502 TGACAA-CTATTTAGACCAAACGATACGATTTCCAAAGCATGAAATGTT-TAGAAAATTGCTCGA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGA-AAAATTGCTCGA
* *** * * * *
22565 AGGAATGGATCGTGTTGAATACTTT-CTTAAACTGAAGTTAAAAAAGAACTCATAAAAGTTTGTC
179 AGGAATGGATCGTCTTGAATACTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* ** * * * * * *
22629 AACTTCGAAAGTTTTGCTGAGAACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCG
243 AAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* * ** ** *
22694 AAGACCAAAAGTTGTTTATAAAATGAGAAC-ATTTAGACCATGTGATGCAATTTCCTGAGCATGG
308 AAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCC-AAGCAT-G
* * * ** * *
22758 AATGTTCGAAAAATTG-TGCGAAGGAATGGATCGTCTTAAATA-TTTAATGAACTGATGTTATAG
371 AATGTTC-AAAAATTGCT-CAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAA
* * ** * * *
22821 AAGAATTCATAAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCA
434 AAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA
* * *
22886 CCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAAT
499 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAAT
* * * * *
22951 GATTCGATTTCCCAAGTATGGAATGTTC-AGAAATTTGCTTGAAGGAATGGATCGTCTTGAATAC
564 GATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* *
23015 TTT-----AT----G--------GAA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * *
23059 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGCCAAAAGTTGTTTACAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-A-TT----------A----TTTACAAAA
* * * * *
23124 TGACAATTTATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGT-GA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGC-TCGA
* * * * * *
23183 AGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCA
179 AGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
*** * ** * * * * *
23248 AGTTCGAAAGTTTTACCGAGAACTTAGAGGGGAACTATTATCACCTAATTAAGTTTTTAATTCAA
244 AGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * *
23313 AGACCAAAAGTTGTTTATAAAATTACAACTATTT-GAACGAAATGATATGATTTCCAGAGTATGG
309 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACCAAATGATGTGATTTCCA-AGCAT-G
* * * ** * *** * *
23377 ATTGTTCGAAAAATGGATCGGAGGAATGGTTCGTCTTGAATACTTTAACTCATAAAA-CTATAAA
371 AATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAA
* * * * * *
23441 AGAACTCATAAAAGTTTGTCACGTTCAAAAGTTAGACCGAGAACCTAGAAAGAAACAATTCTTAC
435 AGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCAC
* * * *
23506 ATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTATTTAGAACAATT
500 ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAAT
* * * * * * * *
23571 GATGCGACTTCCCAAGAATTGAATGTTTGAAAAATTGCTCAAAGGTATAGATCATCTTGAATAA
564 GATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * * * * * *
23635 TTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGAT
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* *
23700 CCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTAAAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTA-TT----------A-----TTTACAAAA
* * * *
23765 TGACAA-CTATTTAGACCAAATGATGCGATTTCCTGACCAAGGAATGTTC-AGAAAATTGCTCGA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGA-AAAATTGCTCGA
* * * * * * *
23828 AGGAATGAATCGTCTTGAATAATTTATGGAATCGATGTTATAACAGAACTCATAAAAGTTTGTCA
179 AGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * ** * **
23893 ACTTCGAAAGTTCGACTTTGAACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAA
244 AGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* *
23958 AGA-CAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGA
309 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTC-CAAGCAT-GA
* * *
24022 ATGTTCGAAAAATTGCTTAAAGGAATGGATCGCCTTAAATACTTTAAGGAACAAAAGTTATAAAA
372 ATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAA
* * * * * *
24087 GAACTTGTAAAATTTTGTCAAGTCCAAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACA
436 GAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACA
* * * * *
24152 TAAATAACTTTTAAATTTAAAGACCAAAAGTTTTTTACAAAATGACAAATATTTAGACCAAATGA
501 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGA
* * * *
24217 TTCGATTTCCTAAGCATGGAATGTTCAAAAAATTACTCGAAGGAATGG---ATC--G--T-C
566 TGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
** * * *
24271 -TT---GAAT--AA-TT-T-ATGGAA----TAAAAGTTTGTCAAGTTCAAAAGTTCGACCAAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
24323 CCAAGAAAGAAACAATTCTCACATAAAT-AGCTTTTTAATTTAAAGGACAAAAGCCTTTTACAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAG-TTTTT-A-TT----------A----TTTACAAA
* * * * * * * ** *
24387 ATGATAATCTATTTAGAACAATTGATGCAATTTCCCGAACAAGGAA-GCTTCGAGTAATTGCACG
114 ATGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATG-TTCGAAAAATTGCTCG
* * * * * *
24451 AAGGAATGGATCGTCTTTG-ATACTTTATGGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGT
178 AAGGAATGGATCGTC-TTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * *
24515 CAACTTC-AGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTATCTCCTAAA-AAGTTTTTAATT
242 CAAGTTCGA-AAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * * * * * * *
24578 CAAAAATCGAATGTTGTTTATAAAATGACAACTACTTAGACCAAATGATGTGATTTCCTGAGCAC
306 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCC-AAGCAT
* * * * * * * * ** *
24643 GAAATATTTAGAAAATTGCTCGAAGGAATAGATCGACTTGAATAATTTATGGACCCGATGTTATA
370 G-AATGTTCA-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATA
* * * * **
24708 AAAGAACTCGTAAAAGTTTGTCAACTTCAAAAGTTCGACCGTGAACCAAGAGAGAAATTATTCTC
433 AAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTC
*
24773 ACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAA
498 ACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAA
* * * * * * *
24838 TGATGTGATTTCTCGAGCATGGAATGTTCGAAAATTTTC-CAGAAGGAATGGATCGTCTTAAATA
563 TGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCATCTTGAATA
24902 C
627 C
* * * *
24903 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGCTCGGTCGAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * *
24968 CCAAGAAAGAAACAATTCACACCTAAATAA-TATTTTAATTCAAAGACCAAAAGTAGTCTACAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGT-TTTT-ATT-----------A-T--T-TACAAA
* * * * * *
25032 ATGACAA-CTATTT-GA-CATAAAGATGCAATTTCCCA-AGCATGGACTGTTCGAAGAATGGCTC
114 ATGAAAATCTATTTAGACCA-AATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTC
* * *
25093 GAAGGAATGGATTGTCTTGAATGCTTTAAGGAATAAAAGTTATAAAAGAACTCGTAAAAGTTTGT
177 GAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * * * * * * * *
25158 CAAATTCGGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTTATTT
242 CAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
* * * *
25223 AATGGCCAAAAGTTGTTTACAAAATGACAATCTATTTAGA--ACA--AT-TGATTTCCCGAGCAT
307 AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATTT-CCAAGCAT
* * * ** *
25283 GGAATGTTCGAAAAATTGCGCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAA
370 -GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATA
* * * * * *
25348 AAAGAACTTGTAAATGTTTTTCAAGTT-TAAAGTTCGGCCTAGATCCAAGAAAGAAACAATTCTC
433 AAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTC
* * *
25412 ACATAAACAATTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAACTATTTAGACCAAA
498 ACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAA
* * * * * * *
25477 CGATACGATTTCCAAAGCATGAAATGTT-TAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATA
563 TGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATA
25541 C
627 C
*** * * * * ** *
25542 TTT-CTTAAACTGAAGTTAAAAAAGAACTCATAAAAGTTTGTCAACTTCGAAAGTTTTGCTGAGA
1 TTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * * **
25606 ACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCGA-AGACCAAAAGTTGTTTATAA
65 ACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-ATT--ATTTA-CAAAA--TG-----AA
** * *
25670 AATGAGAAC-ATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTCGAAAAATTG-TGCG
119 AAT-----CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCT-CG
* * * * * * *
25733 AAGGAATGGATCGTCTTAAATA-TTTAATGAA-CTGATGTTATAGAAGAATTCATAAAAGTTTGT
178 AAGGAATGGATCGTCTTGAATACTTTAAGGAATC-AAAGTTATAAAAGAACTCGTAAAAGTTTGT
* * *
25796 CAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTC
242 CAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTC
* *
25861 AAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGAT-TCGATTTCCCAAGCAT
307 AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGT-GATTT-CCAAGCAT
* * * *
25925 GGAATGTTCGAGAAATTGCTCGAACGAATGGATCGTCTTGAATACTTTATGGAACAAAAGTT-T-
370 -GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATA
* * *
25988 ---G---TC----AAG--T-TC--G----GAAGTTCGACTGAGAACAAAGAAA-AAACAATTCTC
433 AAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTC
* ** * * * * * *
26033 TCATAAATAACATTTTAATTTAAAGAACATAAGTTTTTTTTTACAAAATCACAATCTATTTAGAA
498 ACATAAATAAGTTTTTAATTCAAAGACCAAAAG---TTGTTTACAAAATGACAA-CTATTTAGAC
* * *
26098 CAATTGATGCGATTTCCCGAA-CATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCGTCTTG
559 CAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTG
26162 AATAC
623 AATAC
* ** * * * *
26167 TTTAGGGAGCCGAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* *
26232 CCAAGAGAGAAACTATTGTCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTA-TT----------A-----TTTACAAAA
* * * *
26297 TGACAA-CTATTTAGACCAAATGATGCGATTTCCTGAGCAAGGAATGTTCAAAAAATTGCTCGAA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * *
26361 GGAATGGATCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCATAAAAGTTTGTCAA
180 GGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAA
* * * * **
26426 CTTCGAAAGTTCGACTTTA-AACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAA
245 GTTCGAAAGTTCGGC-TGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* *
26490 AGA-CAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGA
309 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTC-CAAGCAT-GA
** * * * *
26554 ATGTTCAAAAAATTGCTTGAAGGAATGGATTGCCTTAAATACTTTAAGGAACCAAAGTTATAAAA
372 ATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAA
* ** * * *
26619 GAACTTGTAAATTTTTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACA
436 GAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACA
* * * *
26684 TAAATAACTTTTAAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGA
501 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGA
** * *
26749 TTTGATTTCTCAAGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
566 TGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* *
26811 TTT-----AT----G-------A-AA----TAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
26855 CTAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTTTTTACAAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT-A-TT----------A----TTTACAAAA
* * * ** * * ** *
26920 TGACAATCTATTTAGAACAATTGATGTAATTTCTC-GAACATGGAAGGTTCGAGTAATTGCACGA
115 TGAAAATCTATTTAGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * ** * *
26984 AGGAATGGATCGTCTTCG-ATACTTTATGGAATCGAAGTTAAAAAATAGTTCATAAAAGTTTGTT
179 AGGAATGGATCGTCTT-GAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * *
27048 AACTTC-ATAAGTTCAGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAATT
243 AAGTTCGA-AAGTTCGGCTGAGAACCAAGAGAGAAACAATT-CTCACCTAAATAAGTTTTTAATT
** * * * * * ***
27111 TGAAGAACAAATGTTCTTTATAAAATGACAACTTATTTAGACCAAATGATGCGATTTATGAGCAT
306 CAAAGACCAAAAGTTGTTTACAAAATGACAAC-TATTTAGACCAAATGATGTGATTTCCAAGCAT
* * * * * ***
27176 AGAATGTTCAAAAAAATTGATCGAAGGAATGGATTGTCTTGAATAATTTATGGAACCGGAGTTAT
370 -GAATGTTC--AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTAT
* * ** * ** * * *
27241 AAAAGAGCTCGTAAAAGTTTGTCAACTTCGGATGTTCGGTCGTGAACCAAGAGAGAAACTATTCT
432 AAAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCT
* * *
27306 CACCTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATTTAGACGAA
497 CACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * * * *
27371 ATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAGTGGATCGTCCTAAATA
562 ATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATA
27436 C
627 C
* *
27437 TTTAATGAA-CTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGA
1 TTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGA
* * * *
27501 ACCAAGA-A-AAAATAATTCTCACATAAATAACATTTTAATTTGAAGAACATAAGTTTTTTTTAC
65 ACCAAGAGAGAAACT-ATTCTCACCTAAAT-A-A--GT--TTT--------T-A---TTATTTAC
* * * * * * *
27564 AAAATGACAAGCTATTTAGAACAATTGATGCGATTTCCCGAACATGGAATGTTCGAAAAATTGCA
111 AAAATGAAAATCTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCT
* * * * * * * * *
27629 CAAAGGAATGGATCATCTTAAATAATTTAAGGAACCGAAGTTAAAAAAGAACTTGTAAAAGTTTT
176 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * *
27694 TGAAGTTCAAAAGTTCGGCCGAGAACCAAAAGAGAAACTATTATCACCTAAA-AAGTTTTTAATT
241 TCAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * * * * * * *
27758 CAAAGATCGAATGTTGTTTATAAAATGACAACTACTTAGACCGAATGATGTGATTTCCTGAGCAC
306 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCC-AAGCAT
* * * * * * * ** *
27823 GAAATATTCAAAAAATTGCTCGAAGGAATAGATCGACTTGAATA-ATTATGGACCCGATGTTATA
370 G-AATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATA
* * ** * * * **
27887 AAAGAATTCGTAAAAGTTTGTCAACTTCGGAAGTTTGACCGTGAACCAAGAGAGAAATTATTCTC
433 AAAGAACTCGTAAAAGTTTGTCAAGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTC
*
27952 ACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAA
498 ACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAA
* * * * * * *
28017 TGATGTGATTTCTCGAGCATGGAATGTTCGAAAATTTTC-CTGAAGGAATGGATCGTCTTAAATA
563 TGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGGATCATCTTGAATA
28081 C
627 C
* * * *
28082 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGTCAAGTTCGAAATTTCGGTCGAGAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
28147 CCAAGAAAGAAGCAATTCACACCTAAGTAA-TATTTTAATTCAAAGACCAAAAGTAGTCTACAAA
66 CCAAGAGAGAAACTATTCTCACCTAAATAAGT-TTTT-ATT-----------A-T--T-TACAAA
* * * *
28211 ATGACAA-CTATTT-GA-CATAATGATGC-AGTTTCCCA-AGCATGGACTGTTTGAAAAATGGCT
114 ATGAAAATCTATTTAGACCA-AATGATGCGA-TTT-CCAGAGCATGGAATGTTCGAAAAATTGCT
* * *
28271 CGAAGGAATGGATTGTCTTGAATGCTTTAAGGAATAAAAGTTATAAAAGAACTCGTAAAAGTTTG
176 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * ** * * * *
28336 TCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTTATT
241 TCAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * * * *
28401 TAATGGCCAAAAGTTGTTTACAAAATGACAATCTATTTAGA--ACA--AT-TGATTTCCCGAGCA
306 CAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATTT-CCAAGCA
* * * ** *
28461 TGGAATGTTCGAAAAATTGCACGAAGGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAA
369 T-GAATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTAT
* * ** * * *
28526 AAAAGAACTCGTAAATGTTTTTCAAGTTC-AGAAGTTCTG-CCGAGAACTTAGAGAGGAACTATT
432 AAAAGAACTCGTAAAAGTTTGTCAAGTTCTA-AAGTTC-GACCGAGAACCAAGAAAGAAACAATT
* * * *
28589 ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTATTT-GAAC
495 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-AC
* ** * * * * * *
28653 GAAATGATATGATTT-CCAGAGCATGGATTATTCGGAAAATGGCTCGGAGGAATGGATCGTCTTG
559 CAAATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTG
28717 AATAC
623 AATAC
* ** * * *
28722 TTTAAGGAAT-AAAACTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGACCGAAAA
1 TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
* * * * *
28786 CCTAGA-AGGAAACAATTCTTACATAAATAAGTTTTTATTCCAAAGACCAAAAGTTGTTTAGAAA
66 CCAAGAGA-GAAACTATTCTCACCTAAATAAGTTTTTATT------------A----TTTACAAA
* * * * * * *
28850 ACGACAATCTATTTAGAACAATTGATGCGATTTCCCA-AGAATTGAATGTTTGAAAAATTGCTCG
114 ATGAAAATCTATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTCG
* * * * * * * *
28914 AAGGTATAGATCGTCTTGAATAATTTAAGGAATCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTG
178 AAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTC
* * * * * *
28979 AAGTTCGGAAGTTCGG-TCCA-AAACATAGAGAGAAACTATTATCAACTAAATAAGTTTTTAATT
243 AAGTTCGAAAGTTCGGCT-GAGAACCA-AGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT
* * ** * * ** *
29042 CAAAGACCAAAAGTTGTGTATAAAATGACAACTATTTAGACCAACCGAAGCGATTTCCTGGGCTT
306 CAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCC-AAGCAT
* * **
29107 GAAATGTTCAAAAAATTGCTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
370 G-AATGTTC-AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATA
* *
29172 AAATAAGTCGTAAAAGT
433 AAAGAACTCGTAAAAGT
29189 ATGGAATGTT
Statistics
Matches: 11607, Mismatches: 2131, Indels: 1553
0.76 0.14 0.10
Matches are distributed among these distances:
610 2 0.00
611 12 0.00
612 15 0.00
613 8 0.00
614 6 0.00
615 5 0.00
616 8 0.00
617 73 0.01
618 277 0.02
619 405 0.03
620 153 0.01
621 192 0.02
622 317 0.03
623 337 0.03
624 755 0.07
625 926 0.08
626 657 0.06
627 135 0.01
628 14 0.00
629 14 0.00
630 8 0.00
631 14 0.00
632 15 0.00
633 14 0.00
634 6 0.00
635 10 0.00
636 16 0.00
637 40 0.00
638 367 0.03
639 584 0.05
640 432 0.04
641 585 0.05
642 807 0.07
643 838 0.07
644 922 0.08
645 906 0.08
646 197 0.02
647 322 0.03
648 430 0.04
649 233 0.02
650 74 0.01
651 6 0.00
652 5 0.00
653 4 0.00
654 3 0.00
655 5 0.00
656 2 0.00
658 5 0.00
659 3 0.00
660 5 0.00
662 5 0.00
663 3 0.00
664 1 0.00
665 3 0.00
666 8 0.00
668 3 0.00
675 4 0.00
677 6 0.00
678 2 0.00
679 1 0.00
680 2 0.00
681 2 0.00
683 2 0.00
684 3 0.00
685 5 0.00
686 2 0.00
688 1 0.00
689 2 0.00
690 2 0.00
691 2 0.00
693 2 0.00
694 1 0.00
696 1 0.00
697 2 0.00
698 1 0.00
699 3 0.00
701 2 0.00
702 73 0.01
703 14 0.00
704 43 0.00
705 26 0.00
706 14 0.00
707 4 0.00
708 9 0.00
709 1 0.00
712 1 0.00
713 1 0.00
714 7 0.00
716 3 0.00
717 9 0.00
719 4 0.00
721 3 0.00
722 20 0.00
723 21 0.00
724 21 0.00
725 4 0.00
726 4 0.00
727 6 0.00
728 8 0.00
729 10 0.00
730 6 0.00
731 5 0.00
732 7 0.00
733 12 0.00
734 16 0.00
735 15 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (627 bp):
TTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTATTATTTACAAAATGAAAATCTATTTAGA
CCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
AATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCT
GAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
CAAAATGACAACTATTTAGACCAAATGATGTGATTTCCAAGCATGAATGTTCAAAAATTGCTCAA
AGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
AGTTCTAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGA
ATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
Found at i:19236 original size:195 final size:194
Alignment explanation
Indices: 18882--19242 Score: 455
Period size: 195 Copynumber: 1.9 Consensus size: 194
18872 TTAGACCTAA
* * *
18882 TGATGTGATTTCCCAAGCATGGACTGTATGGAAAATTGCTTGAAAGAATGGATCGTCTTGAATAC
1 TGATGTGATTTCCCAAGCATGGAATGTATGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATAC
* * *
18947 TTTAATGAACAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAAGTTCGAAAGTTCGATCGAGAA
66 TTTAATGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGATCAAGAA
** *
19012 CATAGAAAGAAATAATTCTAACATAAATAATTTTTTTTACAAAATGACAATCTATTTAGAATAAT
131 CATAG-AAGAAATAATGATAACATAAATAAGTTTTTTTACAAAATGACAATCTATTTAGAATAAT
* * *
19077 TGATGTGATTTCCCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATT
1 TGATGTGATTTCCCAAGCATGGAATGTAT-GAAAAATTGCTCGAAAGAATGGATCGTCTTGAATA
* * *
19141 CTTT-ATGGAACAGAAGTTA-AAAAGGTACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCG-GCTA
65 CTTTAAT-GAACAAAAGTTATAAAA-GAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGATC-A
* *
19203 AGAACCAATAG-AGAAACT-ATGATCACCTAAATAAGTTTTT
127 AGAA-C-ATAGAAGAAA-TAATGATAACATAAATAAGTTTTT
19243 AATTCAATGT
Statistics
Matches: 142, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
194 8 0.06
195 128 0.90
196 2 0.01
197 4 0.03
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (194 bp):
TGATGTGATTTCCCAAGCATGGAATGTATGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATAC
TTTAATGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAAGTTCGATCAAGAA
CATAGAAGAAATAATGATAACATAAATAAGTTTTTTTACAAAATGACAATCTATTTAGAATAAT
Found at i:29257 original size:83 final size:83
Alignment explanation
Indices: 29118--29271 Score: 218
Period size: 83 Copynumber: 1.9 Consensus size: 83
29108 AAATGTTCAA
* * * ** * *
29118 AAAATTGCTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAATAAGTCGT
1 AAAATTGCTCCAAGGAATGGACCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGT
29183 AAAAGTATGGAATGTTTG
66 AAAAGTATGGAATGTTTG
* * *
29201 AAAATTGCTCCAAGGAATGGACCGTGTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTTGT
1 AAAATTGCTCCAAGGAATGGACCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGT
29266 AAAAGT
66 AAAAGT
29272 TTGTCAAGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 61 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (83 bp):
AAAATTGCTCCAAGGAATGGACCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGT
AAAAGTATGGAATGTTTG
Found at i:29982 original size:215 final size:215
Alignment explanation
Indices: 29189--31701 Score: 1870
Period size: 215 Copynumber: 11.9 Consensus size: 215
29179 TCGTAAAAGT
* * *
29189 ATGGAATGTTTG-AAAATTGCTCCAAGGAATGGACCGTGTTGAATACTTTAATGAACAAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTA
* * *
29253 TAAAAGAACTT-GTAAAAGTTTGTCAAGTT--TAATGTTCGACCAAGAACCAAGAAAGAAACAAT
66 TAAAAGAA-TTCGTAAAAGTTTGTCAAGTTCGGAA-GTTCGACTAAGAACCAAGAGAGAAACAAT
* * * *
29315 TCTCACATAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTACAC
129 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTAGAC
29380 CAAATGATGCGATTTCCCAAGC
194 CAAATGATGCGATTTCCCAAGC
* * * *
29402 ATGGAATGTTCGAAAAACTGCTCAAAGGAATGGATCGTTTTGAATACTTTAAGGAACAAAAGTTT
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTA
*
29467 TAAAAG-ATTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-AGCTGAGAACCAAGAGAGAAACAATT
66 TAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CTAAGAACCAAGAGAGAAACAATT
* * * *
29530 CTCACATAAATAACATTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAATGGCAATCTATTTGGA
130 CTCACATAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-GAAAACTATTTAGA
* * * *
29594 ACAATTTATGCGATTTCCCGAGC
193 CCAAATGATGCGATTTCCCAAGC
* * * * * **
29617 ATAGAATGTTCGAAAAATTTCTCGAAGAAATGGATTGTGTTGAATACTTT-ATGGAACTGAAGTT
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAAT-GAACAAAAGTT
* * * * * * * * * *
29681 AAAAAATAACTCGTAAAAGTTTGTCAACTTCGAAAGTTTGGCTGAGAACCAAGAGAGGAACTATT
65 ATAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAATT
* * * * * * *
29746 ATGACTTAAATATGGTTTTAATTCAAAGACCAAAAGTTTGTTTATAAAATGAAAACTTTTTAGAC
130 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGAAAACTATTTAGAC
** * **
29811 CATGTGATGCAATTTCCTGAGC
194 CAAATGATGCGATTTCCCAAGC
* * * * * ** * *
29833 ATGGAATGTTTGGAAAATTG-TGCAAAGGAAT-GATCGTCTTAAATACTTTAATAAACTGATGTC
1 ATGGAATGTTCGAAAAATTGCT-CAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTT
* * **
29896 ATAGAAGAATTCGTAAATGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACTTTT
65 ATAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAATT
* * *
29961 CTCGCCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAA-TATTTAGAC
130 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-AAACTATTTAGAC
*
30025 CAAATGATTCGATTTCCCAAGC
194 CAAATGATGCGATTTCCCAAGC
* * * * * *
30047 ATGGAATGTTCTAAAAATTACTCGAAGGAATGGATCGTCTTGAATAGTTT-ATGGAACACAAGTT
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAAT-GAACAAAAGTT
** ** * * **
30111 -TGTCAAG--TTCG--AAAG--T-TC--GACCGAGAA---C-A--AAGAA--AATACA-ATTC--
65 AT-AAAAGAATTCGTAAAAGTTTGTCAAGTTCG-GAAGTTCGACTAAGAACCAAGAGAGAAACAA
* * * ** * * * * *
30155 -TCGCATAAATAACT-TTTTAATTTAA---AGA-A-CATAAGTTTTTTTTACAAAGTGACAATCT
128 TTCTC--ACATAAATAAGTT--TTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGA-AAACT
* *
30213 ATTTAGAACAATTGATGCGATTTCCCGAA-C
186 ATTTAGACCAAATGATGCGATTTCCC-AAGC
* * * * **
30243 ATGGAATGTTCGAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTA
* * * * * * * ** * *
30308 AAAAAGAACTCCTAAATGTTTGTTAACTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATTA
66 TAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAATTC
* * * * * *
30373 TCACCTAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAATGACAACTATTTAGACCA
131 TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTAGACCA
**
30438 AATGATGCGATTTCCTGAGC
196 AATGATGCGATTTCCCAAGC
* * * * ** *
30458 AAGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTT-ATGGAACCGATGT
1 ATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAAT-GAACAAAAGT
* * * * ** * **
30521 TATAAAAGAACTCATAAAAGTTTGTCAACTTCGGATGTTCGACTTTGAACAAAGAGAGAAATTAT
64 TATAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAAT
* *
30586 TCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAATGACAACTATTTAGAC
129 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTAGAC
***
30650 CAAATGATGCGATTTCTTGAGC
194 CAAATGATGCGATTTCCCAAGC
* ** * * * *
30672 GTGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTA
* * * * * *
30737 TAAAAGAACTT-GAAAAATTTTGTCAAGTTCGAAAGTTC-AATCGAGAACCAAGAAAGAAACAAT
66 TAAAAGAA-TTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACT-AAGAACCAAGAGAGAAACAAT
* * * * * * *
30800 TATCACATAAATAACTTCTAAATTTAAAGATCAAAAGCTGTTTACAAAATGACAAA-TATTTAGA
129 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-AAACTATTTAGA
*
30864 CCAAATGATTCGATTTCCCAAGC
193 CCAAATGATGCGATTTCCCAAGC
* * *
30887 ATGGAATGTTC-AGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTT-ATGGAATAAAAGT
1 ATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAAT-GAACAAAAGT
* * * *
30950 T-T----G---TC----AAGTTCG-AAAGTTC-G-A---C--CAAGA--ACCAAGAAAGAAACAA
64 TATAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTA-AGAACCAAGAGAGAAACAA
* * * *
30993 TTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAATGACAATCTATTTA
128 TTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGA-AAACTATTTA
** * * *
31057 GAATAATTGATGCAATTTCCTGAA-C
191 GACCAAATGATGCGATTTCC-CAAGC
* ** * * * * **
31082 ATGGAAGGTTCGAGTAATTAG-ACGAAGGAATTGATCGTCTTCG-ATACTTT-ATGGAACCGAAG
1 ATGGAATGTTCGAAAAATT-GCTCAAAGGAATGGATCGTGTT-GAATACTTTAAT-GAACAAAAG
* * * * * * * ** *
31144 TTAAAAAATAACTCATAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGAGAAACTA
63 TTATAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAA
* * * * * *
31209 TTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAACTATTTAG
128 TT-CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTAG
* ***
31273 ACCAAATGATGCAATTTCTTGAGC
192 ACCAAATGATGCGATTTCCCAAGC
* * * * * * * **
31297 GTGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATAATGT-ATGGAACCGAAGTT
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAAT-GAACAAAAGTT
** * * * *** **
31361 ATAAAAGAGCTCGTAAAAGTTTGCCAACTTCGGATGTTCGACCGTGAACCAAGAGAGAAATTATT
65 ATAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAATT
* * * *
31426 CTCACCTAAATAAGTTTTGAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
130 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTAGACC
***
31491 AAATGATGCGATTTCTGGAGC
195 AAATGATGCGATTTCCCAAGC
* * ** * * * * *
31512 ATGGAATGTTCAAAAAATTACTTGAAGGAGTGGATCGTCTTAAATACTTTAAGGAACCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTA
* * * * ** * *
31577 TAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCGAGAACTAAGAAAGAAACAATTC
66 TAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAATTC
* * * *
31642 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGATGACAACTATTTA
131 TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTA
31702 AGGAACAAAA
Statistics
Matches: 1850, Mismatches: 345, Indels: 208
0.77 0.14 0.09
Matches are distributed among these distances:
193 4 0.00
194 66 0.04
195 93 0.05
196 91 0.05
197 8 0.00
198 9 0.00
199 4 0.00
200 4 0.00
201 5 0.00
202 7 0.00
203 9 0.00
204 3 0.00
205 2 0.00
206 4 0.00
207 10 0.01
208 8 0.00
209 2 0.00
210 6 0.00
211 3 0.00
212 6 0.00
213 44 0.02
214 374 0.20
215 869 0.47
216 202 0.11
217 14 0.01
218 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTA
TAAAAGAATTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACTAAGAACCAAGAGAGAAACAATTC
TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAACTATTTAGACCA
AATGATGCGATTTCCCAAGC
Found at i:31814 original size:139 final size:140
Alignment explanation
Indices: 31559--31841 Score: 451
Period size: 139 Copynumber: 2.0 Consensus size: 140
31549 TCTTAAATAC
* *
31559 TTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCGAGAA
1 TTTAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCAAGAA
* * * *
31624 CTAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGA
66 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAA
31689 TGACAA-CTA
131 TGACAATCTA
* *
31698 TTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCAAGAA
1 TTTAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCAAGAA
* ** *
31763 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGGCAAAAGTTGTTTACAAAA
66 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAA
31828 TGACAATCTA
131 TGACAATCTA
31838 TTTA
1 TTTA
31842 GAACAATTGA
Statistics
Matches: 131, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
139 124 0.95
140 7 0.05
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (140 bp):
TTTAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCAAGAA
CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAA
TGACAATCTA
Found at i:32011 original size:350 final size:353
Alignment explanation
Indices: 31356--32051 Score: 968
Period size: 350 Copynumber: 2.0 Consensus size: 353
31346 TATGGAACCG
* * * ** *
31356 AAGTTATAAAAGAGCTCGTAAAAGTTTGCCAACTTCGGATGTTCGACCGTGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGCCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAA
** * *
31421 TTATTCTCACCTAAATAAGTTTTGAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATTT
66 CAATTCTCACATAAATAACTTTTGAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATTT
* ** * * *
31486 AGACCAAATGATGCGATTTCTGGAGCATGGAATGTTCAAAAAATTACTTGAAGGAGTGGATCGTC
131 AGAACAAAT-AT-CGATTTCCCGAGCATGGAATGTTCAAAAAATTACGTGAAGGAATGGATCATC
*
31551 TTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCG
194 TTAAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCG
*
31616 ACCGAGAACTAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGT
259 ACCGAGAACTAAGAAAGAAACAATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGT
* *
31681 TTA-CAAGATGACAACTATTTAAGGAACAA
324 TTATAAAAATGACAACTATTTAAGGAACAA
*
31710 AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGCCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAA
* * *
31775 CAATTCTCACATAAATAACTTTTTAATTTAAAGGGCAAAAGTTGTTTACAAAATGACAATCTATT
66 CAATTCTCACATAAATAACTTTTGAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAA-CTATT
* *
31840 TAGAAC-AAT-T-GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGTGAAGGAATGGATCATCT
130 TAGAACAAATATCGATTTCCCGAGCATGGAATGTTCAAAAAATTACGTGAAGGAATGGATCATCT
* * * * * * * *
31902 TGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTCGGAAGTTCTA
195 TAAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGA
* * * * * *
31967 CTGAGAACTTAGAGAGGAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
260 CCGAGAACTAAGAAAGAAACAATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTT
*
32032 TATAAAAATTACAACTATTT
325 TATAAAAATGACAACTATTT
32052 GAACGAAATG
Statistics
Matches: 299, Mismatches: 41, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
350 161 0.54
351 14 0.05
352 1 0.00
354 113 0.38
355 10 0.03
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (353 bp):
AAGTTATAAAAGAACTCGTAAAAGTTTGCCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAA
CAATTCTCACATAAATAACTTTTGAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATTT
AGAACAAATATCGATTTCCCGAGCATGGAATGTTCAAAAAATTACGTGAAGGAATGGATCATCTT
AAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGAC
CGAGAACTAAGAAAGAAACAATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTT
ATAAAAATGACAACTATTTAAGGAACAA
Found at i:32233 original size:565 final size:568
Alignment explanation
Indices: 31141--32267 Score: 1435
Period size: 565 Copynumber: 2.0 Consensus size: 568
31131 TATGGAACCG
* * * * *
31141 AAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGAGAAA
1 AAGTTAAAAAAGAACTCATAAAAGTTTGTCAAATTCAGAAGTTCGACCAAGAACCAAGAAAGAAA
* * * * *
31206 CTATTACCACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAACTATTT
66 CAATTACCACATAAATAACTTTTTAATTCAAAGAACAAAAGTTCTTTACAAAATGACAACTATTT
* ** * **
31271 AGACCAAATGATGCAATTTCTTGAGCGTGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTC
131 AGAACAAAT-ATG-AATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATC
* * * * *
31336 TTGAATAATGTATGGAACCGAAGTTATAAAAGAGCTCGTAAAAGTTTGCCAACTTCGGATGTTCG
194 TTGAATAATGTAAGGAACCCAAGTTAAAAAAGAACTCGTAAAAGTTTGCCAACTTCGGAAGTTCG
* * * *
31401 ACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTGAATTCAAAGGCCAAAAGTTGT
259 ACCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTGAATTCAAAGACCAAAAGTTGT
* * ** *
31466 TTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTGGAGCATGGAATGTTCAAAAAATT
324 TTAAAAAATGACAACTATTTAGACCAAATGATACGATTTCCAGAGCATGGAATGTTCAAAAAATG
* * **
31531 ACTTGAAGGAGTGGATCGTCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGT
389 ACTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAACTATAAAAGAACTCGAAAAAGT
* * *
31596 TTGTCAAATTCGAAAGTTCGACCGAGAACTAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTA
454 TTATCAAATTCAAAAGTTCGACCGAGAACTAAGAAAGAAACAATTCTCACATAAATAAGTTTTTA
* *
31661 ATTCAAAGACCAAAAGTAGTTTACAAGATGACAA-CTATTTAAGGAACAA
519 ATTCAAAGACCAAAAGTAGTTTACAAAACGACAATCTATTTAAGGAACAA
* * *
31710 AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCAAGAACCAAGAAAGAAA
1 AAGTTAAAAAAGAACTCATAAAAGTTTGTCAAATTCAGAAGTTCGACCAAGAACCAAGAAAGAAA
* ** *
31775 CAATT-CTCACATAAATAACTTTTTAATTTAAAGGGCAAAAGTTGTTTACAAAATGACAATCTAT
66 CAATTAC-CACATAAATAACTTTTTAATTCAAAGAACAAAAGTTCTTTACAAAATGACAA-CTAT
*
31839 TTAGAAC-AAT-TG-ATTTCCCGAGCATGGAATGTTCGAAAAATTGCGT-GAAGGAATGGATCAT
129 TTAGAACAAATATGAATTTCCCGAGCATGGAATGTTCAAAAAATTGC-TCGAAGGAATGGATCAT
* * * ** *
31900 CTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTCGGAAGTTC
193 CTTGAATAATGTAAGGAACCCAAGTTAAAAAAGAACTCGTAAAAGTTTGCCAACTTCGGAAGTTC
* * ** * *
31965 TACTGAGAACTTAGAGAGGAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
258 GACCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTGAATTCAAAGACCAAAAGTTG
* * * * **
32030 TTTATAAAAATTACAACTATTT-GAACGAAATGATATGATTTCCAGAGCATGGATTGTTCGGAAA
323 TTTA-AAAAATGACAACTATTTAG-ACCAAATGATACGATTTCCAGAGCATGGAATGTTCAAAAA
* * * * * *
32094 ATGGCTCGGAGGAATGGATTGTCTTGAATACTTTAAGGAA-TAAAACTATAAAAGAACTCGTAAA
386 ATGACTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAACTATAAAAGAACTCGAAAA
* * *
32158 AGTTTATCAAGTTCAAAAGTTTGACCGAGAACCT-AGAAAGAAACAATTCTTACATAAATAAGTT
451 AGTTTATCAAATTCAAAAGTTCGACCGAGAA-CTAAGAAAGAAACAATTCTCACATAAATAAGTT
* *
32222 TTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTATTTA
515 TTTAATTCAAAGACCAAAAGTAGTTTACAAAACGACAATCTATTTA
32268 GAACAATTGA
Statistics
Matches: 475, Mismatches: 76, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
565 264 0.56
566 90 0.19
567 2 0.00
568 1 0.00
569 108 0.23
570 10 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (568 bp):
AAGTTAAAAAAGAACTCATAAAAGTTTGTCAAATTCAGAAGTTCGACCAAGAACCAAGAAAGAAA
CAATTACCACATAAATAACTTTTTAATTCAAAGAACAAAAGTTCTTTACAAAATGACAACTATTT
AGAACAAATATGAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTT
GAATAATGTAAGGAACCCAAGTTAAAAAAGAACTCGTAAAAGTTTGCCAACTTCGGAAGTTCGAC
CGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTGAATTCAAAGACCAAAAGTTGTTT
AAAAAATGACAACTATTTAGACCAAATGATACGATTTCCAGAGCATGGAATGTTCAAAAAATGAC
TCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAACTATAAAAGAACTCGAAAAAGTTT
ATCAAATTCAAAAGTTCGACCGAGAACTAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAAT
TCAAAGACCAAAAGTAGTTTACAAAACGACAATCTATTTAAGGAACAA
Found at i:32235 original size:215 final size:214
Alignment explanation
Indices: 31698--34077 Score: 2277
Period size: 215 Copynumber: 11.2 Consensus size: 214
31688 ATGACAACTA
* * * * *
31698 TTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCAAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
* * * * **
31763 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGGCAAAAGTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* *
31828 TGACAATCTATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGAAAAATTGCGT-GA
131 TGACAA-CTATTTA-ACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGC-TCGA
*
31887 AGGAATGGATCATCTTGAATAC
193 AGGAATGGATCGTCTTGAATAC
* * * ** *
31909 TTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTCGGAAGTTCTACTGAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
** * * * *
31974 CTTAGAGAGGAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAA
66 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-CAAA
* * ** * * * *
32039 ATTACAACTATTTGAACGAAATGATATGATTTCCAGAGCATGGATTGTTCGGAAAATGGCTCGGA
130 ATGACAACTATTT-AACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAA
*
32104 GGAATGGATTGTCTTGAATAC
194 GGAATGGATCGTCTTGAATAC
* ** * ** * *
32125 TTTAAGGAA-TAAAACTATAAAAGAACTCGTAAAAGTTTATCAAGTTCAAAAGTTTGACCGAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
* * * * *
32189 CCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * * *
32254 CGACAATCTATTTAGAACAATTGATGTGATTTCCCA-AGAATTGAATGTTTGAAAAATTTCTCGA
131 TGACAA-CTATTTA-ACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTCGA
* * *
32318 AGGTATAGATCGTCTTGAATAA
193 AGGAATGGATCGTCTTGAATAC
* * * *
32340 TTTAAGGAACCGAAGTTAAAAAAGAACTCGT-AAAGATTTTTGAAGTTCGGAAGTTCGATCC-AG
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG-TTTTTCAAGTTCGGAAGTTCG-GCCGAG
* * * * * *
32403 AACCTAGAGAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACTAACAGTTGTTTATAA
64 AACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * *** ** * * * * *
32468 AATGACTACGATTTAGACCAACCAAAACGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGA
129 AATGACAACTATTTA-ACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGA
* *
32533 AGGAATGTATCGTCTTGGATAC
193 AGGAATGGATCGTCTTGAATAC
** * * * * *
32555 TTTAAGGAACTGAAGTTATAAAATAAGTCGTAAAAGTTTATT-AACTTCGAAAGTTCGGCCTAGA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT-TTCAAGTTCGGAAGTTCGGCCGAGA
* * *
32619 ACCAAGAGAGAAACTATTTTCAGCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* ** * * * * *
32684 ATTACAACTA-CCAGACCAAATGATGCAATTTCTC-GAGCATCGAATGTTCGGAATATTG-TCAA
130 ATGACAACTATTTA-ACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGA
* * *
32746 AAGAATGGACCGCCTTGAATAC
193 AGGAATGGATCGTCTTGAATAC
* * * * *
32768 TTTAAGGAATCAAAGTTATGAAAGAACTCGTATAAGTTTTTCAGGTT-GGTAAGTTCGGCCAAGA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGG-AAGTTCGGCCGAGA
* * *
32832 ACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTACAA
65 ACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAA
* * * * * * *
32896 AATAACAACTATTTAGACCTAATGATGTGATTTCCCA-AGCATGGACTATACAGAAAATTTG-TC
129 AATGACAACTATTTA-ACCAAATGATGCGATTT-CCAGAGCATGGAATGTTC-GAAAAATTGCTC
* *
32959 GAAGAAATGTATCGTCTTGAATAC
191 GAAGGAATGGATCGTCTTGAATAC
* * * * * ** *
32983 TTTAATGAACGAAAGTTATAAAAGCACTTGTAAAAGTTTGTCAAGTT-TAAAGTTCGGCCGAGAT
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
* * *
33047 CCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * *
33112 TGACAACTATTTAGACCAAATGATACGATTTCCCA-AGCATGAAATGTTCAAAAAATTGCTCGAA
131 TGACAACTATTTA-ACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTCGAA
*
33176 GGAATGGATCGTCTTGTATAC
194 GGAATGGATCGTCTTGAATAC
* * *
33197 TTTAAGGAACCAAAGTTATAAAAGAACTCG-AGAAAGTTTTTCAACTTCGAAAGTTCGGCCCA-A
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTA-AAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGA
* *
33260 AGCCTAGAGAGAAACAATTCTCACCTAAATTAGTTTTTAATTCAAAGA-C------------C--
65 A-CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* *
33310 -A--A-AACTATTTAGACCAAATGATGCGATTTCTC-GAGGATTGAATGTTCGAAAAATTGCTCG
129 AATGACAACTATTTA-ACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCG
* *
33370 AAGGAATGGATTGTCTTGAATAA
192 AAGGAATGGATCGTCTTGAATAC
* * * * * * * * *
33393 TTTATGGAACCGATGTTATAAAAGAACTCATTAAA-TTTTGTTAACTTCGGAAGTTCGACAC-TG
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTT-TCAAGTTCGGAAGTTCGGC-CGAG
* ** *
33456 AACAAAGAGAGAAATTATTCTCACCTAAGTAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAA
64 AACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * *
33520 AATGAAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTTGAAAAATTGCTTG
129 AATGACAACTATTTA-ACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCG
* *
33584 AAGAAATGGATCGTCTTAAATAC
192 AAGGAATGGATCGTCTTGAATAC
* * * * * *** * * *
33607 TTTAAGGAATCGAAGTTCTGAAAGAACTCGTAAAATTTTTTTTGGTTTGTAAGTTCGGCCGATAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
* * * *
33672 CCAAAAGAGAAACAATTCTCACCTAAATCAGTTTTTAATTCAAAGTCCTAAAGTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* ** * * *
33737 TCACAACTATTTAGACCAAATGATATGATTTCCCA-AGCATGTAATGTTCGAAAAACTGCTTGAA
131 TGACAACTATTTA-ACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTCGAA
*
33801 GGAATGGATCATCTTGAATAC
194 GGAATGGATCGTCTTGAATAC
* * * * *
33822 TTTAAGGAACAAAAGTTTTAAAAGAACGCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCTGAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
* *
33887 CCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAAGACCAAAAAGTTGTTTACAA
66 CCAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACC-AAAAGTTGTTTACAA
* * *
33951 AATGACAATCTATTTGGAA-CAATTTATGCGATTTCCCA-AGCATAGAATGTTCGAAAAATTGCT
129 AATGACAA-CTATTT--AACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCT
*
34014 CGAAGGAATGGATCGTGTTGAATAC
190 CGAAGGAATGGATCGTCTTGAATAC
* * * *
34039 TTTATGGAACTAAAATTAAAAAAGAACTCGTAAAAGTTT
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
34078 ATAAAATGAC
Statistics
Matches: 1769, Mismatches: 335, Indels: 124
0.79 0.15 0.06
Matches are distributed among these distances:
195 5 0.00
196 156 0.09
197 4 0.00
199 1 0.00
202 1 0.00
208 1 0.00
211 113 0.06
212 16 0.01
213 145 0.08
214 403 0.23
215 631 0.36
216 191 0.11
217 100 0.06
218 1 0.00
219 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (214 bp):
TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGCCGAGAA
CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
TGACAACTATTTAACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
AATGGATCGTCTTGAATAC
Found at i:32648 original size:996 final size:976
Alignment explanation
Indices: 30719--32693 Score: 2225
Period size: 996 Copynumber: 2.0 Consensus size: 976
30709 TCTTAAATAC
* * * * * *
30719 TTTAAGGAACCAAAGTTATAAAAGAACTTGAAAAATTTTGTCAAGTTCGAAAGTTCAATCGAGAA
1 TTTAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCAACCAAGAA
*
30784 CCAAGAAAGAAACAATTATCACATAAATAACTTCTAAATTTAAAGATCAAAAGCTGTTTACAAAA
66 CCAAGAAAGAAACAATTATCACATAAATAACTTCTAAATTTAAAGAGCAAAAGCTGTTTACAAAA
*
30849 TGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCTAAG
131 TGACAAATATTTAGA-CAAA-GATTCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAG
* *
30914 GAATGGATCGTCTTGAATACTTTATGGAATAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAAC
194 GAATGGATCATCTTGAATACTTTAAGGAATAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAAC
* * *
30979 CAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTTTTTACAAAAT
259 CAAGAAAGAAACAATTATCACATAAATAACTTTTTAATTCAAAGAACAAAAGCTTTTTAAAAAAT
* * * * * *
31044 GACAATCTATTTAGAATAATTGATGCAATTTCCTGAACATGGAAGGTTCGAGTAATTAGACGAAG
324 GACAATCTATTTAGAAGAAATGATACAATTTCCAGAACATGGAAGGTTCGAGAAAATAGACGAAG
* * * ** * *
31109 GAATTGATCGTCTTCGATACTTTATGGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGTCAAC
389 GAATGGATCGTCTTCGATACTTTAAGGAACCAAAACTAAAAAAGAACTCATAAAAGTTTATCAAC
* * * * *
31174 TTCAGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTACCACCTAAATAAGTTTTTAATTCAAAG
454 TTCAAAAGTTCGACCGAGAACCAAGAAAGAAACAATTACCACATAAATAAGTTTTTAATTCAAAG
* * * * *** **
31239 AACAAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATGCAATTTCTTGAGCGTGGAAT
519 AACAAAAGTTCTTTACAAAACGACAACTATTTAGAACAAATGATGCAATTTCCCAAGAATGGAAT
* * * *
31304 GTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATAATGTATGGAACCGAAGTTATAAAAGA
584 GTTCAAAAAATTGCTCGAAGGAATAGATCGTCTTGAATAATGTAAGGAACCGAAGTTAAAAAAGA
* * * * *
31369 GCTCGTAAAAGTTTGCCAACTTCGGATGTTCGACCGTGAACCAAGAGAGAAATTATTCTCACCTA
649 ACTCGTAAAAGTTTG-CAACTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTATCACCTA
* * ** **
31434 AATAAGTTTTGAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATG
713 AATAAGTTTTGAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACGATTTAGACCAAACAAAA
* * *
31499 CGATTTCTGGAGCATGGAATGTTCAAAAAATTACTTGAAGGAGTGGATCGTCTTAAATACTTTAA
778 CGATTTCTGGAGCATGAAATGTTCAAAAAATTACTCGAAGGAATGGATCGTCTTAAATACTTTAA
* *
31564 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCGACCGAGAACTAAG
843 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTATCAAATTCGAAAGTTCGACCGAGAACCAAG
*
31629 AAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGATGACA
908 AAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACA
31694 ACTA
973 ACTA
* * *
31698 TTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAATTCGGAAGTTCGACCAAGAA
1 TTTAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCAACCAAGAA
* * * * *
31763 CCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGGCAAAAGTTGTTTACAAAA
66 CCAAGAAAGAAACAATTATCACATAAATAACTTCTAAATTTAAAGAGCAAAAGCTGTTTACAAAA
* * *
31828 TGACAATCTATTTAGA-ACA-ATT-GATTTCCCGAGCATGGAATGTTC-GAAAAATTGCGT-GAA
131 TGACAA-ATATTTAGACAAAGATTCGATTTCCCAAGCATGGAATGTTCAG-AAAATTGC-TCGAA
31888 GGAATGGATCATCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAA
193 GGAATGGATCATCTTGAATACTTTAAGG-----AA--T--AAAAG---T--T---TG----TCAA
* * ** ** * * * * *
31953 GTTCGGAAGTTCTACTGAGAACTTAGAGAGGAACTATTATCACCTAAATAAGTTTTTAATTCAAA
237 GTTCGAAAGTTCGACCAAGAACCAAGAAAGAAACAATTATCACATAAATAACTTTTTAATTCAAA
* * ** *
32018 GACCAAAAG-TTGTTTATAAAAATTACAA-CTATTT-GAACGAAATGATATGATTTCCAGAGCAT
302 GAACAAAAGCTT-TTTA-AAAAATGACAATCTATTTAGAA-GAAATGATACAATTTCCAGAACAT
** * * * * *
32080 GGATTGTTCG-GAAAATGGCTCGGAGGAATGGATTGTCTT-GAATACTTTAAGGAA-TAAAACTA
364 GGAAGGTTCGAGAAAATAG-ACGAAGGAATGGATCGTCTTCG-ATACTTTAAGGAACCAAAACTA
* * * * *
32142 TAAAAGAACTCGTAAAAGTTTATCAAGTTCAAAAGTTTGACCGAGAACCTAGAAAGAAACAATT-
427 AAAAAGAACTCATAAAAGTTTATCAACTTCAAAAGTTCGACCGAGAACCAAGAAAGAAACAATTA
* * * *
32206 CTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTATTTAGAA
492 C-CACATAAATAAGTTTTTAATTCAAAGAACAAAAGTTCTTTACAAAACGACAA-CTATTTAGAA
* ** * ** * *
32271 CAATTGATGTGATTTCCCAAGAATTGAATGTTTGAAAAATTTCTCGAAGGTATAGATCGTCTTGA
555 CAAATGATGCAATTTCCCAAGAATGGAATGTTCAAAAAATTGCTCGAAGGAATAGATCGTCTTGA
* * *
32336 ATAATTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAGATTTTTG-AAGTTCGGAAGTTCGATC
620 ATAATGTAAGGAACCGAAGTTAAAAAAGAACTCGTAAA-A-GTTTGCAACTTCGGAAGTTCGA-C
* * * *
32400 C-AGAACCTAGAGAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACTAACAGTTGTTT
682 CGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTGAATTCAAAGACCAAAAGTTGTTT
* * * * *
32464 ATAAAATGACTACGATTTAGACCAACCAAAACGATTTCCTGG-GCTTGAAATGTTCAAAAAATTG
747 ACAAAATGACAACGATTTAGACCAAACAAAACGATTT-CTGGAGCATGAAATGTTCAAAAAATTA
* ** ** * * *
32528 CTCGAAGGAATGTATCGTCTTGGATACTTTAAGGAACTGAAGTTATAAAATAAGTCGTAAAAGTT
811 CTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTT
* * * * * * * *
32593 TATTAACTTCGAAAGTTCGGCCTAGAACCAAGAGAGAAACTATTTTCAGCTAAATAAGTTTTTAA
876 TATCAAATTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAA
* *
32658 TTCAAAGACCAAAAGTTGTTTACAAAATTACAACTA
941 TTCAAAGACCAAAAGTAGTTTACAAAATGACAACTA
32694 CCAGACCAAA
Statistics
Matches: 819, Mismatches: 142, Indels: 53
0.81 0.14 0.05
Matches are distributed among these distances:
974 1 0.00
975 58 0.07
976 4 0.00
978 2 0.00
979 121 0.15
980 10 0.01
982 1 0.00
984 5 0.01
987 1 0.00
989 1 0.00
992 2 0.00
994 1 0.00
995 112 0.14
996 480 0.59
997 16 0.02
998 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (976 bp):
TTTAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAATTCGAAAGTTCAACCAAGAA
CCAAGAAAGAAACAATTATCACATAAATAACTTCTAAATTTAAAGAGCAAAAGCTGTTTACAAAA
TGACAAATATTTAGACAAAGATTCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGA
ATGGATCATCTTGAATACTTTAAGGAATAAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAACCA
AGAAAGAAACAATTATCACATAAATAACTTTTTAATTCAAAGAACAAAAGCTTTTTAAAAAATGA
CAATCTATTTAGAAGAAATGATACAATTTCCAGAACATGGAAGGTTCGAGAAAATAGACGAAGGA
ATGGATCGTCTTCGATACTTTAAGGAACCAAAACTAAAAAAGAACTCATAAAAGTTTATCAACTT
CAAAAGTTCGACCGAGAACCAAGAAAGAAACAATTACCACATAAATAAGTTTTTAATTCAAAGAA
CAAAAGTTCTTTACAAAACGACAACTATTTAGAACAAATGATGCAATTTCCCAAGAATGGAATGT
TCAAAAAATTGCTCGAAGGAATAGATCGTCTTGAATAATGTAAGGAACCGAAGTTAAAAAAGAAC
TCGTAAAAGTTTGCAACTTCGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTATCACCTAAAT
AAGTTTTGAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACGATTTAGACCAAACAAAACGA
TTTCTGGAGCATGAAATGTTCAAAAAATTACTCGAAGGAATGGATCGTCTTAAATACTTTAAGGA
ACCAAAGTTATAAAAGAACTCGAAAAAGTTTATCAAATTCGAAAGTTCGACCGAGAACCAAGAAA
GAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAACT
A
Found at i:33467 original size:196 final size:196
Alignment explanation
Indices: 33116--33939 Score: 624
Period size: 214 Copynumber: 4.0 Consensus size: 196
33106 ACAAAATGAC
* * * *
33116 AACTATTTAGACCAAATGATACGATTTCCCAAGCA-TGAAATGTTCAAAAAATTGCTCGAAGGAA
1 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATTG-AATGTTCGAAAAATTGCTCGAAGGAA
* * * * *
33180 TGGATCGTCTTGTATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAGAAAGTTTTTCAACTTC
65 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC-ATAAAATTTTTTAACTTC
* * *
33245 GAAAGTTCGGCCCAAAGCC-TAGAGAGAAACAATTCTCACCTAAATTAGTTTTTAATTCAAAGAC
129 GAAAGTTCGG-CCGAA-CCAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC
33309 -C-AA
192 ACAAA
*
33312 AACTATTTAGACCAAATGATGCGATTTCTCGAGGATTGAATGTTCGAAAAATTGCTCGAAGGAAT
1 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATTGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * *
33377 GGATTGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCATTAAATTTTGTTAACTTCG
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAATTTT-TTAACTTCG
* * ** *
33442 GAAGTTCGACACTGAA-CAAAGAGAGAAATTATTCTCACCTAAGTAAGTTTTTAATTCAAAGACA
130 AAAGTTCGGC-C-GAACCAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC-
33506 AAAGTTGTTTACAAAATGAA
192 ----------AC---A--AA
* * * *
33526 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTTGAAGAAAT
1 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATTGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * *** *
33591 GGATCGTCTTAAATACTTTAAGGAATCGAAGTTCTGAAAGAACTCGTAAAATTTTTTTTGGTTTG
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAA-TTTTTTAACTTCG
* *
33656 TAAGTTCGGCCGATAACCAAA-AGAGAAACAATTCTCACCTAAATCAGTTTTTAATTCAAAGTCC
130 AAAGTTCGGCCG--AACCAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAA-T-----T-C
*
33720 TAAAGTTGTTTACAAAATCA
186 -AAA---G---ACACAA--A
** * * * *
33740 CAACTATTTAGACCAAATGATATGATTTCCCAAGCA-TGTAATGTTCGAAAAACTGCTTGAAGGA
1 -AACTATTTAGACCAAATGATGCGATTTCTCGAGCATTG-AATGTTCGAAAAATTGCTCGAAGGA
* ** * * * * * *
33804 ATGGATCATCTTGAATACTTTAAGGAACAAAAGTTTTAAAAGAACGCGTAAAAGTTTGTCAAGTT
64 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAA-TTTTTTAACTT
* * * *
33869 CGGAAGTTCGGCTGAGAACC-AAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAAG
128 CGAAAGTTCGGC--CGAACCAAAGAGAGAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAG
33932 AC-CAAA
190 ACACAAA
33938 AA
1 AA
33940 GTTGTTTACA
Statistics
Matches: 502, Mismatches: 77, Indels: 97
0.74 0.11 0.14
Matches are distributed among these distances:
195 9 0.02
196 152 0.30
197 6 0.01
198 1 0.00
200 2 0.00
201 2 0.00
204 1 0.00
207 3 0.01
208 2 0.00
209 1 0.00
212 2 0.00
213 1 0.00
214 153 0.30
215 152 0.30
216 5 0.01
217 2 0.00
220 1 0.00
221 1 0.00
222 3 0.01
225 1 0.00
228 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (196 bp):
AACTATTTAGACCAAATGATGCGATTTCTCGAGCATTGAATGTTCGAAAAATTGCTCGAAGGAAT
GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAATTTTTTAACTTCGA
AAGTTCGGCCGAACCAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACACAA
A
Found at i:33757 original size:625 final size:624
Alignment explanation
Indices: 32696--33938 Score: 1567
Period size: 625 Copynumber: 2.0 Consensus size: 624
32686 TACAACTACC
* *
32696 AGACCAAATGATGCAATTTCTCGAGCATCGAATGTTCGGAATATTGTCAAAAGAATGGACCGCCT
1 AGACCAAATGATGCAATTTCTCGAGCATCGAATGTTCGAAAAATTGTCAAAAGAATGGACCGCCT
* * * * * ** *
32761 TGAATACTTTAAGGAATCAAAGTTATGAAAGAACTCGTATAAGTTTTTCAGGTTGGTAAGTTCGG
66 TGAATAATTTAAGGAACCAAAGTTATAAAAGAACTCATATAAATTTTTCAACTTGGTAAGTTCGA
*
32826 CCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGGAAAACCAAAAGTAGTT
131 CCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGCAAAACCAAAAGTAGTT
* * * *
32891 TACAAAATAACAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTATACAGAAAATTT
196 TACAAAATAACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATACAGAAAAATT
* * * * *
32956 GTCGAAGAAATGTATCGTCTTGAATACTTTAATGAACGAAAGTTATAAAAGCACTTGTAAAAGTT
261 GTCGAAGAAATGGATCGTCTTAAATACTTTAAGGAACGAAAGTTATAAAAGAACTCGTAAAAGTT
* *
33021 TGTCAAGTTTAAAGTTCGGCCGAGATCCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAAT
326 TGTCAAGTTTAAAGTTCGGCCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAAT
*
33086 TCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATACGATTTCCCAAGCA
391 TCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGACCAAATGATACGATTTCCCAAGCA
* * * *
33151 TGAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGTATACTTTAAGGAACCAAAGTTAT
456 TGAAATGTTCAAAAAACTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTAT
* * *
33216 AAAAGAACTCG-AGAAAGTTTTTCAACTTCGAAAGTTCGGCCCA-AAGCCTAGAGAGAAACAATT
521 AAAAGAACGCGTA-AAAGTTTGTCAACTTCGAAAGTTCGGCCCAGAA-CCAAGAGAGAAACAATT
* * *
33279 CTCACCTAAATTA-GTTTTTAATTCAAAGACCAAAACTATTT
584 CTCACATAAATAACATTTTT-ATTCAAAGACCAAAACTATTT
* * * * * ** *
33320 AGACCAAATGATGCGATTTCTCGAGGATTGAATGTTCGAAAAATTGCTCGAAGGAATGGATTGTC
1 AGACCAAATGATGCAATTTCTCGAGCATCGAATGTTCGAAAAATTG-TCAAAAGAATGGACCGCC
* * * *
33385 TTGAATAATTTATGGAACCGATGTTATAAAAGAACTCAT-TAAATTTTGTTAACTTCGG-AAGTT
65 TTGAATAATTTAAGGAACCAAAGTTATAAAAGAACTCATATAAATTTT-TCAACTT-GGTAAGTT
* ** *
33448 CGA-CACTGAA-CAAAGAGAGAAATTATTCTCACCTAAGTAAGTTTTTAATT-CAAAGA-CAAAA
128 CGACCA-AGAACCAAA-AGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGCAAA-ACCAAAA
* * * * **
33509 GTTGTTTACAAAATGAA-AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT-TTG
190 GTAGTTTACAAAAT-AACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATACAG
* * *
33572 AAAAATTGCTTGAAGAAATGGATCGTCTTAAATACTTTAAGGAATCG-AAGTTCTGAAAGAACTC
254 AAAAATTG-TCGAAGAAATGGATCGTCTTAAATACTTTAAGGAA-CGAAAGTTATAAAAGAACTC
* * *** * * *
33636 GTAAAATTTTTTTTGGTTTGTAAGTTCGGCCGATAACCAA-AAGAGAAACAATTCTCACCTAAAT
317 GTAAAAGTTTGTCAAGTTT-AAAGTTCGGCCGAGAACCAAGAA-AGAAACAATTCTCACATAAAT
* * * *
33700 CAGTTTTTAATTCAAAGTCCTAAAGTTGTTTACAAAATCACAACTATTTAGACCAAATGATATGA
380 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGACCAAATGATACGA
* * *
33765 TTTCCCAAGCATGTAATGTTCGAAAAACTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGA
445 TTTCCCAAGCATGAAATGTTCAAAAAACTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
* * * **
33830 ACAAAAGTTTTAAAAGAACGCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCTGAGAACCAAGAGA
510 ACAAAAGTTATAAAAGAACGCGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCCAGAACCAAGAGA
33895 GAAACAATTCTCACATAAATAACATTTTTATTCAAAGACCAAAA
575 GAAACAATTCTCACATAAATAACATTTTTATTCAAAGACCAAAA
33939 AGTTGTTTAC
Statistics
Matches: 527, Mismatches: 78, Indels: 27
0.83 0.12 0.04
Matches are distributed among these distances:
623 8 0.02
624 172 0.33
625 337 0.64
626 10 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (624 bp):
AGACCAAATGATGCAATTTCTCGAGCATCGAATGTTCGAAAAATTGTCAAAAGAATGGACCGCCT
TGAATAATTTAAGGAACCAAAGTTATAAAAGAACTCATATAAATTTTTCAACTTGGTAAGTTCGA
CCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGCAAAACCAAAAGTAGTT
TACAAAATAACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATACAGAAAAATT
GTCGAAGAAATGGATCGTCTTAAATACTTTAAGGAACGAAAGTTATAAAAGAACTCGTAAAAGTT
TGTCAAGTTTAAAGTTCGGCCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAAT
TCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGACCAAATGATACGATTTCCCAAGCA
TGAAATGTTCAAAAAACTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTAT
AAAAGAACGCGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCCAGAACCAAGAGAGAAACAATTCT
CACATAAATAACATTTTTATTCAAAGACCAAAACTATTT
Found at i:34547 original size:196 final size:193
Alignment explanation
Indices: 34199--34580 Score: 473
Period size: 196 Copynumber: 2.0 Consensus size: 193
34189 AAGAATTCGT
* * * * ** * *
34199 AAAAGTTTGTCAAGTTCGGAAGTTCGACTGAGAACCAAGAGAGAAATTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAAAAACAATTCTCACATAAATAAC
* * * *
34264 TTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTT
66 ATTTTAATTCAAAGACACAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGATTT
* **
34329 CCCAAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTTTGGAAC
131 CCCAAGCATGGAATGTTCGAAAAATTACACGAAGGAATGGATCGTC-TGAATACTTTTTGGAAC
* *
34393 AAAAGTTTGTCAAGTTTGAAAGTTCGACCGAGAACAAAGA-AAAAACAATTCTCGCATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAAAAACAATTCTCACATAAATAAC
* * * * **
34457 ATTTTAATTTAAAGA-ACATAAGTTTTTTTTACAAAATGACAATCTATTTAGAATAGTTGATGCG
66 ATTTTAATTCAAAGACACA-AAG--TTGTTTACAAAATGACAA-ATATTTAGAACAAATGATGCG
*
34521 ATTTACCGAA-CATGGAATGTTCGAAAAATTACACGAAGGAATGGATCGTCTGAATACTTT
127 ATTT-CCCAAGCATGGAATGTTCGAAAAATTACACGAAGGAATGGATCGTCTGAATACTTT
34581 AAGGAACCGA
Statistics
Matches: 159, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
192 2 0.01
193 34 0.21
194 36 0.23
195 27 0.17
196 56 0.35
197 4 0.03
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (193 bp):
AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAAAAACAATTCTCACATAAATAAC
ATTTTAATTCAAAGACACAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGATTT
CCCAAGCATGGAATGTTCGAAAAATTACACGAAGGAATGGATCGTCTGAATACTTTTTGGAAC
Found at i:34784 original size:214 final size:214
Alignment explanation
Indices: 34412--35595 Score: 1206
Period size: 215 Copynumber: 5.5 Consensus size: 214
34402 TCAAGTTTGA
* * * * * * ** * * *
34412 AAGTTCGACCGAGAACAAAGA-AAAAACAATTCTCGCATAAATAACATTTTAATTTAAAGAACAT
1 AAGTTCGGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* ** ** *
34476 AAGTTTTTTTTACAAAATGACAATCTATTTAGAATAGTTGATGCGATTTACC-GAACATGGAATG
66 AAG--TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTT-CCTGAGCATGGAATG
* * *
34540 TTCGAAAAATTACACGAAGGAATGGATCGTC-TGAATACTTTAAGGAACCGAAGTTAAAAAAGAA
127 TTCGAAAAATTGCTCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* *
34604 CTCGTAAAACTTTGTCAACTTCAG
191 CTCGTAAAAGTTTTTCAACTTCAG
* * * * *
34628 AAGTTTGGCCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTGAGTTCAAAGACCGA
1 AAGTTCGGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
34693 ATGTTGTTTATAAAACGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCAAGGAATGTTTG
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCG
* * *
34758 AAAAATTGCTCGAAGGTATAGATCGTCTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTCG
131 AAAAATTGCTCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * *
34823 TAAAAGTTTTTGAATTTCGG
195 TAAAAGTTTTTCAACTTCAG
* *
34843 AAGTTCGGTCC-A-AAACATAGAGAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACC
1 AAGTTCGG-CCGAGAACCA-AGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* *** * * * * *
34906 AAAAGTTGTTTATAAAATGACAACTATTTAGACCAACCAAAGCAATTTCCTGGGCTTGAAATGTT
64 AAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTT
* * * * *
34971 CAAAAAATTACTCGAAAGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAAGT
129 CGAAAAATTGCTCGAAGGAATG-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* *
35036 CGTAAAAGTTTTTTAACTTCAA
193 CGTAAAAGTTTTTCAACTTCAG
* * *
35058 AAGTTCAGCCTAGAACCAAGAGAGAAAATATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
35123 AAGTTGTTTACAAAATTACAACTA-TTAGACCAAATGATGCAATTT-CTCGAGCATCGAATGTTT
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTC
* * * * * *
35186 GAAAAATTG-TCAAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATGAAGGAACTT
130 GAAAAATTGCTCGAAGGAAT-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* **
35250 GTATAAGTTTTTCAGGTTC-G
194 GTAAAAGTTTTTCAACTTCAG
* * * *
35270 TAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACC
1 -AAGTTCGGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATT-CAAAGACC
* * * * * ** * *
35334 AAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTA
64 AAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTT
* * * * *
35399 CAGAAAATTTG-TCGAAGGAATGTATCATCTTGAATACTTTAATGAA-CGAAAGGTATAAAAGCA
129 C-GAAAAATTGCTCGAAGGAATG-ATCGTCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAA
* * * *
35462 CTTGTAAAAGTTTGTCAAGTTTA-
191 CTCGTAAAAGTTTTTCAACTTCAG
* * * * ** * *
35485 AAGTTCGGCCGAGATCCAGGAAAGAAACAATTCTCACAAAAAGAATTTTTTAATTCAAAGACCAA
1 AAGTTCGGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
*
35550 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATACGATTT
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
35596 GTAAAGTTTT
Statistics
Matches: 805, Mismatches: 144, Indels: 40
0.81 0.15 0.04
Matches are distributed among these distances:
213 142 0.18
214 224 0.28
215 383 0.48
216 24 0.03
217 32 0.04
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (214 bp):
AAGTTCGGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCG
AAAAATTGCTCGAAGGAATGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTTTCAACTTCAG
Found at i:35422 original size:428 final size:430
Alignment explanation
Indices: 34544--35588 Score: 1257
Period size: 428 Copynumber: 2.4 Consensus size: 430
34534 GGAATGTTCG
* * *
34544 AAAAATTACACGAAGGAATGGATCGTC-TGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCG
1 AAAAATTACTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * *
34608 TAAAACTTTGTCAACTTCAGAAGTTTGGCCGAGAACCAAGAGAGAAACTATTATCACCTAAATAA
66 TAAAAGTTTGTCAACTTCAAAAGTTCGGCCGAGAACCAAGAGAGAAAATATTCTCACCTAAATAA
* * * * * * *
34673 GTTTTGAGTTCAAAGACCGAATGTTGTTTATAAAACGACAACTATTTAGACCAAATGATGCGATT
131 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCAATT
* * * *
34738 TCCTGAGCAAGGAATGTTTGAAAAATTGCTCGAAGGTATAGATCGTCTTGAATAATTTAAGGAAC
196 TCCTGAGCAACGAATGTTTGAAAAATTGCTCAAAGGAATAGATCGCCTTGAATAATTTAAGGAAC
* * *
34803 CGAAGTTAAAAAAGAACTCGTAAAAGTTTTTGAATTTCGGAAGTTCGGTCCAAAACATAGAGAGA
261 CGAAGTTAAAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGTCCAAAACATAAAGAGA
* * * * *
34868 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTAT
326 AACAATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATAAAAACTAT
*** * *
34933 TTAGACCAACCAAAGCAATTTCCTGGGCTTGAAATGTTCA
391 TTAGACCAACCAAAGCAATTTCCCAAGCATGAAATGTACA
* * *
34973 AAAAATTACTCGAAAGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAAGTCG
1 AAAAATTACTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * *
35038 TAAAAGTTTTTTAACTTCAAAAGTTCAGCCTAGAACCAAGAGAGAAAATATTCTCACCTAAATAA
66 TAAAAGTTTGTCAACTTCAAAAGTTCGGCCGAGAACCAAGAGAGAAAATATTCTCACCTAAATAA
*
35103 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAACTA-TTAGACCAAATGATGCAATT
131 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCAATT
* * *
35167 T-CTCGAGCATCGAATGTTTGAAAAATTG-TCAAAGGAATGGATCGCCTTGAATACTTTAAGGAA
196 TCCT-GAGCAACGAATGTTTGAAAAATTGCTCAAAGGAATAGATCGCCTTGAATAATTTAAGGAA
* ** * * * * *
35230 TCGAAGTTATGAAGGAACTTGTATAAGTTTTTCAGGTTCGTAAGTTCGG-CCAAGAACCA-AAAG
260 CCGAAGTTAAAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGTCCAA-AA-CATAAAG
* *
35293 AGAAACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTACAAAATAAAAA
323 AGAAACAATTATCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTAGTTTACAAAATAAAAA
** * ** * *
35357 CTATTTAGACCTAA-TGATGTGATTTCCCAAGCATGGACTGTACA
387 CTATTTAGACC-AACCAAAGCAATTTCCCAAGCATGAAATGTACA
* ** * * * * *
35401 GAAAATTTGTCGAAGGAATGTATCATCTTGAATACTTTAATGAA-CGAAAGGTATAAAAGCACTT
1 AAAAATTACTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACTC
* * * * * ** *
35465 GTAAAAGTTTGTCAAGTT-TAAAGTTCGGCCGAGATCCAGGAAAGAAACA-ATTCTCACAAAAAG
65 GTAAAAGTTTGTCAACTTCAAAAGTTCGGCCGAGAACCAAGAGAGAAA-ATATTCTCACCTAAAT
*
35528 AATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGAT
129 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGAT
35589 ACGATTTGTA
Statistics
Matches: 522, Mismatches: 85, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
427 84 0.16
428 238 0.46
429 73 0.14
430 127 0.24
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
AAAAATTACTCGAAGGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
TAAAAGTTTGTCAACTTCAAAAGTTCGGCCGAGAACCAAGAGAGAAAATATTCTCACCTAAATAA
GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCAATT
TCCTGAGCAACGAATGTTTGAAAAATTGCTCAAAGGAATAGATCGCCTTGAATAATTTAAGGAAC
CGAAGTTAAAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGGTCCAAAACATAAAGAGA
AACAATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATAAAAACTAT
TTAGACCAACCAAAGCAATTTCCCAAGCATGAAATGTACA
Found at i:35888 original size:345 final size:347
Alignment explanation
Indices: 35248--35925 Score: 990
Period size: 345 Copynumber: 2.0 Consensus size: 347
35238 ATGAAGGAAC
35248 TTGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAA
1 TTGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAA
*
35313 TAAGTTTTTAATTGGAAAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTG
66 TAAGTTTTTAATTGAAAAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTG
* * * * * * *
35378 ATTTCCCAAGCATGGACTGTACAGAAAATTTGTCGAAGGAATGTATCATCTTGAATACTTTAATG
131 ATTTCCAAAGCATGAACTGTACAGAAAAATTGTCGAAGGAATGAATCATCTTAAATACTCTAAGG
* * * * * *
35443 AACGAAAGGTATAAAAGCACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGGCCGAGATCCAGGAAA
196 AACGAAAGGTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAGTTCGACCGAGAACCAAGAAA
* *
35508 GAAACAATTCTCACAAAAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-C
261 GAAACAATTCTCACAAAAAGAAATTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGACAATC
35572 TATTTAGACCAAATGATACGAT
326 TATTTAGACCAAATGATACGAT
* * * * *
35594 TTGTA-AAGTTTTTCTGGTTTGTAAGTTCGGTCGAGAACCAAAAGTGAAACAATTCTCACCTAAA
1 TTGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAA
* *
35658 TAAGTTTTTAATTGAAAAACCAAAAGTA-TTTACAAAATGACAACTATTTAGACCTAATGATGTG
66 TAAGTTTTTAATTGAAAAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTG
*
35722 ATTTCCAAAGTATGAACTGTAC-GAAAAATTGCTCGAAGGAATGAATCATCTTAAATACTCTAAG
131 ATTTCCAAAGCATGAACTGTACAGAAAAATTG-TCGAAGGAATGAATCATCTTAAATACTCTAAG
* * * *
35786 GAAC-AAATGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTTGATCGAGAACCAAG
195 GAACGAAA-GGTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCA-AAGTTCGACCGAGAACCAAG
* * * *
35850 AGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAACACCAAAGGTTGTTTACAAAATGAC
258 AAAGAAACAATTCTCACAAAAAGAA-ATTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGAC
35914 AATCTATTTAGA
322 AATCTATTTAGA
35926 ACAATTTATG
Statistics
Matches: 295, Mismatches: 32, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
343 11 0.04
344 115 0.39
345 150 0.51
346 19 0.06
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (347 bp):
TTGTATAAGTTTTTCAGGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAA
TAAGTTTTTAATTGAAAAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTG
ATTTCCAAAGCATGAACTGTACAGAAAAATTGTCGAAGGAATGAATCATCTTAAATACTCTAAGG
AACGAAAGGTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCAAAGTTCGACCGAGAACCAAGAAA
GAAACAATTCTCACAAAAAGAAATTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGACAATC
TATTTAGACCAAATGATACGAT
Found at i:36096 original size:559 final size:558
Alignment explanation
Indices: 35069--36154 Score: 1411
Period size: 559 Copynumber: 1.9 Consensus size: 558
35059 AGTTCAGCCT
* * *
35069 AGAACCAAGAGAGAAAATATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
1 AGAACCAAAAGAGAAAATATTCTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTATTTAC
* * **
35134 AAAATTACAACTATTAGACCAAATGATGCAATTTCTCGAGCATCGAATGTTTGAAAAATTGTCAA
66 AAAATGACAACTATTAGACCAAATGATGCAATTTCTCAAGCATCGAATGTACGAAAAATTGTCAA
* * * * * * * * * *
35199 AGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATGAAGGAACTTGTATAAGTTTTTCA
131 AGGAATGAATCACCTTAAATACTCTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
* * * * *
35264 GGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGGA
196 AGTTCGTAAGTTCGACCAAGAACCAAAAGAGAAACAATTCTCACATAAATAAATTTTTAATTGCA
* *
35329 AAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGA
261 AAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGAACTAATGATGCGATTTCCCAAGCATGGA
* * * *
35394 CTGTACAGAAAATTTGTCGAAGGAATGTATCATCTTGAATACTTTAATGAACGAAAGGTATAAAA
326 ATGTACAGAAAATTTGTCGAAGGAATGGACCATCTTGAATACTTTAATGAACAAAAGGTATAAAA
* * * * *
35459 GCACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGGCCGAGATCCAGGAAAGAAACAATTCTCACAA
391 GAACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGACCGAGAACCAAGAAAGAAACAACTCTCACAA
* *
35524 AAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGAT
456 AAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGACCAAAGGAT
35589 ACGATTTGTAAAGTTTTTCTGGTTTGTAAGTTCGGTCG
521 ACGATTTGTAAAGTTTTTCTGGTTTGTAAGTTCGGTCG
* *
35627 AGAACCAAAAGTGAAACA-ATTCTCACCTAAATAAGTTTTTAATTGAAAAACCAAAAG-TATTTA
1 AGAACCAAAAGAGAAA-ATATTCTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTATTTA
* ** *
35690 CAAAATGACAACTATTTAGACCTAATGATGTGATTTC-CAAAGTAT-GAACTGTACGAAAAATTG
65 CAAAATGACAACTA-TTAGACCAAATGATGCAATTTCTC-AAGCATCGAA-TGTACGAAAAATTG
* * *
35753 CTCGAAGGAATGAATCATCTTAAATACTCTAAGGAA-CAAATGTTTTAAAAGAACTCGTAAAAGT
127 -TCAAAGGAATGAATCACCTTAAATACTCTAAGGAATCAAA-GTTATAAAAGAACTCGTAAAAGT
* * * *
35817 TTGTCAAGTTCAG-AAGTTTGATCGAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTT
190 TTGTCAAGTTC-GTAAGTTCGACCAAGAACCAAAAGAGAAACAATTCTCACATAAATAA-ATTTT
* * * * *
35881 T-ATT-CAAACACCAAAGGTTGTTTACAAAATGACAATCTATTTAGAAC-AATTTATGCGATTTC
253 TAATTGCAAA-ACCAAAAGTAGTTTACAAAAT-AAAAACTATTTAGAACTAA-TGATGCGATTTC
* ** * * *
35943 CCAAGTATGGAATGT-TTGAAAA-TTGCTCGAAGGACTGGACCGTGTTGAATACTTTAATGAACA
315 CCAAGCATGGAATGTACAGAAAATTTG-TCGAAGGAATGGACCATCTTGAATACTTTAATGAACA
* * *
36006 AAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTAATGTTCGATCGAGAACCAAGAAAGAAA
379 AAAGGTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGACCGAGAACCAAGAAAGAAA
*
36071 CAACTCTCACATAAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTT
444 CAACTCTCACAAAAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTT
*
36136 AGACCAAAGGATGCGATTT
509 AGACCAAAGGATACGATTT
36155 CCCAAGCATG
Statistics
Matches: 452, Mismatches: 64, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
557 22 0.05
558 95 0.21
559 293 0.65
560 42 0.09
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (558 bp):
AGAACCAAAAGAGAAAATATTCTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTATTTAC
AAAATGACAACTATTAGACCAAATGATGCAATTTCTCAAGCATCGAATGTACGAAAAATTGTCAA
AGGAATGAATCACCTTAAATACTCTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCA
AGTTCGTAAGTTCGACCAAGAACCAAAAGAGAAACAATTCTCACATAAATAAATTTTTAATTGCA
AAACCAAAAGTAGTTTACAAAATAAAAACTATTTAGAACTAATGATGCGATTTCCCAAGCATGGA
ATGTACAGAAAATTTGTCGAAGGAATGGACCATCTTGAATACTTTAATGAACAAAAGGTATAAAA
GAACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGACCGAGAACCAAGAAAGAAACAACTCTCACAA
AAAGAATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTATTTAGACCAAAGGAT
ACGATTTGTAAAGTTTTTCTGGTTTGTAAGTTCGGTCG
Found at i:36186 original size:214 final size:215
Alignment explanation
Indices: 35616--38355 Score: 2568
Period size: 214 Copynumber: 12.8 Consensus size: 215
35606 TCTGGTTTGT
** * * * *
35616 AAGTTCGGTCGAGAACCAA-AAGTGAAACAATTCTCACCTAAATAAGTTTTTAATTGAAAAACCA
1 AAGTTCGACCGAGAACCAAGAA-AGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
35680 AAAG-TATTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCAAAGTAT-GAACTGTA
65 AAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA-TGTT
* * * * * *
35743 CGAAAAATTGCTCGAAGGAATGAATCATCTTAAATACTCTAAGGAACAAATGTTTTAAAAGAACT
129 CGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACT
35808 CGTAAAAGTTTGTCAAGTTC-A
194 CGTAAAAGTTTGTCAAGTTCGA
* * * * *
35829 GAAGTTTGATCGAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAACACC
1 -AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA-GTTTTTAATTCAAAGACC
* * * * *
35893 AAAGGTTGTTTACAAAATGACAATCTATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGT
64 AAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT
* * * * *
35958 TTG-AAAATTGCTCGAAGGACTGGACCGTGTTGAATACTTTAATGAACAAAAGTTATAAAAGAAC
128 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC
* *
36022 TTGTAAAAGTTTGTCAAGTT-TA
193 TCGTAAAAGTTTGTCAAGTTCGA
* * * * *
36044 ATGTTCGATCGAGAACCAAGAAAGAAACAACTCTCACATAAAGAATTTTTTAATTCAAAGACCAA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* * * *
36109 AAGTTGTTTACAAAATCACAACTATTTAGACCAAAGGATGCGATTTCCCAAGCATGTAATGTTTG
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCG
* * *
36174 AAAAACTGCTCGAAGGAATGGATCGCCTTGAATACTTTAAGGAACAAAAGTT-TCAAAAGAACTT
131 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTAT-AAAAGAACTC
*
36238 GTAAAAGTTTTTCAAGTTC-A
195 GTAAAAGTTTGTCAAGTTCGA
* * * * *
36258 GAAGTTTGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTTAAAGACC
1 -AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA-GTTTTTAATTCAAAGACC
* * * * * * *
36322 AAAAGTTGTTTTCAAAATGACAATCTATTTGGAACAATTTATGCAATTTCCCAAGCATAGAATGT
64 AAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT
* * ** *
36387 TCGAAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTTATGGAACTGAAGTTAAAAAAGAAC
128 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC
*
36452 TCGTAAAAGTTTGTCAACTTCGA
193 TCGTAAAAGTTTGTCAAGTTCGA
* * * * * * * * * *
36475 AAGTTTGGCTGAGAACCAAGAGAGGAAA-TATTATTACTTAAATATGTTTTTAATCCAAAGACCA
1 AAGTTCGACCGAGAACCAAGA-AAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
* ** * **
36539 AAAGTTGTTTATAAAATGACAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTC
65 AAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * * ** * * *
36604 GGAAAATTG-TACGAAGGAATGGATCATCTTAAATA-TTTAATGAACTGATGTTATAGAAGAATT
130 GAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACT
* *
36667 CGTAAACGTTTGTCAAGTTTGA
194 CGTAAAAGTTTGTCAAGTTCGA
* * ** * * *
36689 AAGTTCGACTGAGAACCAAGAGAGAAACTGTTCTCACCTAAATAAGTTTTTAATTCAAAGAACGA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
36754 AAGTTGTTTACAAAATGACAATCTATTTGGAACAATTTATGCGATTTCCCAAGCATAGAATGTTT
66 AAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * *** * * *
36819 GAAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTTATGAAATTGAAGTTAAAAAAGAAATT
130 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTC
*
36884 GTAAAAGTTTGTCAACTTCGA
195 GTAAAAGTTTGTCAAGTTCGA
* *** * * * * * * *
36905 AAGTTTGGGTGAGAACCAAGAGAGGAAA-TATTATTACTTAAATATGTTTTTAATCCAAAGACCA
1 AAGTTCGACCGAGAACCAAGA-AAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
* * ** * **
36969 AAAGTTGTTTATAAAATGAGAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTC
65 AAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * ** * * * *
37034 GAAAAATTG-TACGAAGGAATGGATCATCTTAAATA-TTTAATGAACTGATGGTATAGAAGAATT
130 GAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACT
*
37097 CGTAAAAGTTTGTCAAGTTTGA
194 CGTAAAAGTTTGTCAAGTTCGA
** * * * * *
37119 AAGTTCGACTAAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGAACGA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
37184 AAGTTGTTTACAAAATGACAATCTATTTGGAACAATTTATGCGATTT-CCAAGCATAGAATGTTC
66 AAGTTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * ** *
37248 GAAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTTACGGAACTGAAGTTAAAAAAGAACTC
130 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTC
* *
37313 GTAAAAGTTTGTCAACTTCCA
195 GTAAAAGTTTGTCAAGTTCGA
* * ** * * * * * * * *
37334 AAGTTTGGCTAAGAACCAAGAGAGGAACTATTATCACTTAAATATGTTTTTAATTCGAAGACAAA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* ** * ** *
37399 AAGTTGTTTATAAAATGACAACTATTTAGACCATGTGATGCAATTTCCTGAGCATGGAATGTTTG
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCG
* * * * * ** * * *
37464 GAAAATTG-TGCGAAGGAATGGGTCATCTTAAATA-TTTAATGAACTGATGTTATAGAAGAATTC
131 AAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTC
37527 GTAAAAGTTTGTCAAGTTCGA
195 GTAAAAGTTTGTCAAGTTCGA
* * * * * *
37548 AAGTTTGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* *
37613 AAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCG
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCG
*
37678 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAACAAAAGTT-T----G---TC-
131 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCG
* *
37734 ---AAGTTCG-AAAGTTCGA
196 TAAAAGTTTGTCAAGTTCGA
** * * * * * ** * * **
37750 CCG--AGAAC-A-AA--GA--TA-AAACAATTCTCTCATAAATAACATTTTAATTTAAAGAACTT
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* * *
37806 AAGTTTTTTTTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAA-CATGGAAT
66 AAG---TTGTTTACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAAT
* * * * * *
37870 GTTCAAAAAATTTCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTAAAGTTAAAAAAGT
126 GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGA
* *
37935 ACTCGTAAAAGTTTGTCAACTTCGG
191 ACTCGTAAAAGTTTGTCAAGTTCGA
* * * * * * * *
37960 AAGTTTGGCCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGTTTTTAGTTCAAAGACCGA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * * *
38025 ATGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGAAAAGTTCA
66 AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCG
* * * *
38090 AAAAATTGCTTGAAGGAATGGAT-GCCTTAAATACTTTAAGGAACGAAAGTTATAAAAGAACTTC
131 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAAC-TC
* *
38154 -TAAAATTTTGTTAAGTTCGA
195 GTAAAAGTTTGTCAAGTTCGA
* * * *
38174 AAGTTCGATCGAGAACCAAGAAAGAAACAATTAC-CACATAAATAACTTTTAAATTTAAAGACCA
1 AAGTTCGACCGAGAACCAAGAAAGAAACAATT-CTCACATAAATAAGTTTTTAATTCAAAGACCA
* * * * *
38238 AAAGTAGTTTACAAAATGAAAAATATTTAGACCAAATGATTCTATTTCCCAAGCATGGAATGTTC
65 AAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * *
38303 -AGAAAATTGCTTC-AAGGAATAGATCGACTTGAATACTTTATGGAATAAAAGTT
130 GA-AAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTT
38356 TGTCAAGTTC
Statistics
Matches: 2065, Mismatches: 396, Indels: 129
0.80 0.15 0.05
Matches are distributed among these distances:
193 35 0.02
194 1 0.00
196 18 0.01
197 84 0.04
198 4 0.00
199 1 0.00
200 2 0.00
202 10 0.00
203 6 0.00
205 2 0.00
207 2 0.00
209 6 0.00
210 8 0.00
212 2 0.00
213 54 0.03
214 831 0.40
215 626 0.30
216 328 0.16
217 12 0.01
218 1 0.00
219 32 0.02
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (215 bp):
AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAA
AAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCG
AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCG
TAAAAGTTTGTCAAGTTCGA
Found at i:37868 original size:197 final size:194
Alignment explanation
Indices: 37529--48407 Score: 1469
Period size: 215 Copynumber: 51.9 Consensus size: 194
37519 AAGAATTCGT
* * * * * *
37529 AAAAGTTTGTCAAGTTCGAAAGTTTGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
* * * *
37594 TTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGATTT
66 ATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGATTT
* * *
37659 CCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAAC
131 CCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
37723 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGATA-AAACAATTCTCTCATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
* ** * * *
37787 ATTTTAATTTAAAGAACTTAAGTTTTTTTTTACAAAATGACAATCTATTTAGAACAATTGATGCG
66 ATTTTAATTCAAAGAACCAAAG---TTGTTTACAAAATGACAA-ATATTTAGAACAAATGATGCG
*
37852 ATTTCCCGAA-CATGGAATGTTCAAAAAATTTCACGAAGGAATGGATCGTCTTGAATACTTTAAG
127 ATTTCCC-AAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAG
37916 GAAC
191 GAAC
* * * * *
37920 TAAAGTTAAAAAAGTACTCGTAAAAGTTTGTCAACTTCGGAAGTTTGGCCGAGAACCAAGAGAGA
1 ----------AAA--A---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGA
* * * ** * * * *
37985 AACTATTATCACCTAAATAAGTTTTTAGTTCAAAG-ACCGAATGTTGTTTATAAAATGACAACTA
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* * * * * * **
38049 TTTAGACCAAATGATGTGATTTCTCGAGCATGAAAAGTTCAAAAAATTGCTTGAAGGAATGGAT-
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
* *
38113 GCCTTAAATACTTTAAGGAAC
174 GTCTTGAATACTTTAAGGAAC
* * * * * *
38134 GAAAGTTATAAAAGAACTTCTAAAATTTTGTTAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGA
1 AAAAGTT-T----G----TC---AA----GTT-CG---AA-AGTTCGACCGAGAACAAAGAGAGA
* * *
38199 AACAATTAC-CACATAAATAAC-TTTTAAATTTAAAG-ACCAAAAGTAGTTTACAAAATGAAAAA
45 AACAATT-CTCACATAAATAACATTTT-AATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAA
* * * * * *
38261 TATTTAGACCAAATGATTCTATTTCCCAAGCATGGAATGTTCAGAAAATTGCTTC-AAGGAATAG
107 TATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGC-ACGAAGGAATGG
* * *
38325 ATCGACTTGAATACTTTATGGAAT
171 ATCGTCTTGAATACTTTAAGGAAC
* * * *
38349 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACTAAGAAAGAAACAATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
* * * * * * *
38414 TTTTTAATTCAAAG-ACCAAAAGTAGTTTACAAGATGACAACTATCTAGACCTAATGATGCGATT
66 ATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGATT
* * * ** *
38478 TCTCAAGCATGGACTGTACGTAAAA-TGGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
130 TCCCAAGCATGGAATGTTCAAAAAATTGCA-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
38542 C
194 C
* *
38543 AAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAA-TTCAGAAGCTCGATTGAGA-AGCAAGAAA
1 AAAAGTT-T----G---TC----AAGTTCG--AAAGTTC-G-A-C-CGA--GA-ACA--AAGAGA
* * * * *
38606 GAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGACAAAAGTTGTTTACAAAATGACAATC
43 GAAACAATTCTCACATAAATAACATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAA-A
* * ** *
38671 TATTTAGAAC-AAT--T--GATTTCCCGAGCATGCAATGTTCGGAAAATTGCGCGAAGGAATGGA
107 TATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGA
*
38731 TCATCTTGAATACTTTAAGGAAC
172 TCGTCTTGAATACTTTAAGGAAC
** * *** * * ** *
38754 CCAAGTTAAAAAAGAACTCATAAATGTTTTTCAAGTTCGGA-AGTTGTGCCGAGAACTTAGAG-A
1 AAAAGTT-----TG---TC---AA-G-TTCGAAAGTTC-GACCG-AG-AAC-A-AA--GAGAGAA
** * * ** * *
38817 GGAATTATTATCACCTAA-ATA-AGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAAAATTACA
46 ACAATTCTCA-CA-TAAATA-ACA-TTTT-AATTCAAAGAACC-AAAGTTGTTTACAAAATGACA
* * ** * * ** * * *
38879 ACTATTT-GAATGAAATGATATGATTTCCAAAGCATGGATTGTTCGGAAAATGGCTCGGAGGAAT
105 AATATTTAGAA-CAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAAT
*
38943 GGATTGTCTTGAATACTTTAAGTTATAAAACTATAAAAGAACTC
169 GGATCGTCTTGAATACTTTAAG----------------GAA--C
* * ** * *
38987 GTAAAAGTTTGTCAAGTTCAAAAGTTCGACCGAAAACCTAGAAAGAAACAATTCTTACATAAATA
1 --AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATA
** * * * *
39052 AGTTTTTATTTCAAAG-ACCAATAGTTGTTTACAAAACGACAATCTATTTAGAACAATTGATGCG
64 ACATTTTAATTCAAAGAACCAA-AGTTGTTTACAAAATGACAA-ATATTTAGAACAAATGATGCG
* * ** * * * * *
39116 ATTTCCCAAGAATTGAATGTTTGAAAAATTTCTCGAAGGTATAGATCGTCTTGAATAATTTAAGG
127 ATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGG
39181 AACC
192 AA-C
* * * **
39185 GAAGTTAAAAAAGAACTCGTAAAGTCTTTTGAAGTTCGAAAGTTCGGTCC-AAAACCTAGAGAGA
1 --------AAAAG---T--T--TGTC-----AAGTTCGAAAGTTC-GACCGAGAACAAAGAGAGA
* * * ** * *
39249 AACTATTATCACCTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAAAATGACAACTA
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* *** * *** * * * *
39313 TTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGGAATGTATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
39378 GTCTTGAATACTTTAAGGAATCGAAGTTATAAAATGTC
174 GTCTTGAATACTTT----AA--G--G------AA---C
* * * * * * * ** *
39416 GTAAAAGTTTGTTAACTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATTATTCTCACCTAAATA
1 --AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATA
** * * * * * *
39481 AGTTTTTTAACTCAAAG-ACCAAAAGTTGTTTACAAAATTACAACTA-TTAGACCGAATGATGCA
64 A-CATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCG
* * * ** *
39544 ATTTCTCGAGCATCGAATGTTCGGAAAATTGTCA--AAGGAATGGATCGCCTTGAATACTTTAAG
127 ATTTCCCAAGCATGGAATGTTCAAAAAATTG-CACGAAGGAATGGATCGTCTTGAATACTTTAAG
39607 GAATC
191 GAA-C
* * * * *
39612 GAAGTTATGAAAGAACTCGTATAAGTTTTTTAGGTTCGTAAGTTCGGCCAAGAACCAAA-AGAGA
1 ------A--AAAG---T--T-T--G----TCAAGTTCGAAAGTTCGACCGAGAA-CAAAGAGAGA
* ** * * * * *
39676 AACAATTCTCACCTAAATAAGTTTTTAATTCGAA-AACCAAAAGTAGTTTACAAAATAACCACTA
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* * * * * * * * *
39740 TTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTACAGAAAATTTG-TCGAAGAAATGTAT
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCA-AAAAATTGCACGAAGGAATGGAT
*
39804 CGTCTTGAATACTTTAATGAACGAAAGTTAT
173 CGTCTTGAATACTTTAA-G---G--A---AC
* * * * * *
39835 AAAAGCACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGGCCGAGATCCAAGAAAGAAACAATTCTC
1 AAAAG--TTTGT-CAAG--T-TC--G---AAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTC
** * *
39900 ACATAAAGT-ATTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
55 ACATAAA-TAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACA
* * * * ***
39963 AATGATACGATTTCCCAAGCATGAAATGTTTAGAAAATTGTTTGAAGGAATGGATCGTCTTGAAT
118 AATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAAT
40028 ACTTTAAGGAAC
183 ACTTTAAGGAAC
* ** * * *
40040 CAAAGTTAT-AAAAGAACTCGAAAAAGTTTGTCAACTTCGAAATTTTGGCCCAAAGCCAAGAGAG
1 AAAAGTT-TGTCAAG--TTCG--AAAG--T-TCGAC--CG--A-----G----AA-CAAAGAGAG
* * * ** ** * *
40104 AAATAATTCTCACCTAAATTAGTTTTTAATTCAAAG-ACCAAAACTATTTAGACCAAATGATGC-
44 AAACAATTCTCACATAAATAACATTTTAATTCAAAGAACCAAAGTTGTTT--ACAAAATGA--CA
* * ** * * * * ** * *
40167 GAT-TTCTCG-AGGATTGGATGTTCGAAAAATTGCTCGAAGGAATGG-ATCGTCTTGAATACTT-
105 AATATT-TAGAACAAAT-GATG--CG----ATTTC-CCAA-GCATGGAAT-GT-TCAAAAAATTG
* * ** * * *
40228 ---TAAGGAAT-CAAAGT-TATGAA-A---GAACTCGTA-
158 CACGAAGGAATGGATCGTCT-TGAATACTTTAA--GGAAC
* ** * * * * *
40258 AAAA-TTTTTCTGGTTTGTAAGTTCGGCCGAGAACCAAA-AGAGAAACAATTCCCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAA-CAAAGAGAGAAACAATTCTCACATAAATAA
** * * * * * *
40321 GTTTTTAATTGAAA-AACCAAAAG-TATTTACAAAATGACAACTATTTAGACCTAATGATGTGAT
65 CATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGAT
* * * * * * *
40384 TTCCCAAGTAT-GAACTGTACGAAAAATTGCTCGAAGGAATGAATCATCTTAAATACTCTAAGGA
129 TTCCCAAGCATGGAA-TGTTCAAAAAATTGCACGAAGGAATGGATCGTCTT-GA-A---T-----
*
40448 ACAAATTTTTAAAAGAACTC
183 AC-----TTT-AAGGAA--C
* *
40468 GTAAAAGTTTGTCAAGTTCGAAAGTTCTG-TCGAGAACCAAGAGAGAAACAATTCTCACATAAAT
1 --AAAAGTTTGTCAAGTTCGAAAGTTC-GACCGAGAACAAAGAGAGAAACAATTCTCACATAAAT
* * * * * *
40532 AACATTTTTATTGAAA-CACCAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTTAT-CT
63 AACATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAA-ATATTTAGAACAAATGATGC-
* * ** * * * *
40595 GATTTCCCAAGAATGAAATGTT-TGAAAATTGCTCGAAGGAATGGACCGTGTTGAATACTTTAAT
126 GATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAG
40659 GAAC
191 GAAC
* * * * * *
40663 AAAAGTTATAAAAGAACTTTTAAAAGTTTGTCAAGTTTACTATTCGACCGAGAACCAGGAAAGAA
1 AAAAGTT-T----G------T-CAAGTTCG--AA----A--GTTCGACCGAGAACAAAGAGAGAA
* ** * * *
40728 ACAATTCTCACATAAAGAATTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATCACAACTGT
46 ACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATAT
* * * * *
40792 TTAGACCAAATGATACGATTTCCCAAGCATGTAATGTTCGAAAAACTGCACGAAGGAATGGATCG
110 TTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCG
40857 TCTTGAATACTTTAAGGAAC
175 TCTTGAATACTTTAAGGAAC
* ** * *
40877 AAAAGTTTTAAAAGAACTCGTAAAAGTTTGTTAAGTTCAAAAGTTCGGTCAAGAACCAAGAGAGA
1 AAAAG-TTT----G---TC-------------AAGTTCGAAAGTTCGACCGAGAACAAAGAGAGA
* * * *
40942 AACAATTCTCACATAAATAACATTTTTATTCAAA-CACCAAAATTTATTTACAAAATGACAATAT
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-AT
* * * ** * * *
41006 ATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGTT-TGAAAATTGCTCAAAGGAATGGAC
108 ATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGAT
* * *
41070 CGTGTTGAATACTGTAATGAAC
173 CGTCTTGAATACTTTAAGGAAC
* * * * *
41092 AAAAGTTATAAAAGAATTTGTAAAAGTTTGTCAAGTTGAATGTTCGACCGAGAACCACGAAAGAA
1 ---------AAAAG--TTTGT-CAAG--T-TC-----GAAAGTTCGACCGAGAACAAAGAGAGAA
* * * * *
41157 ACAATTCTCACATAAAGAA-TTTGTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATCATAACTA
46 ACAATTCTCACATAAATAACATT-TTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* * * * * * *
41220 TTTGGACCAAATGATGCGATTTCCCAAGCATGTAATGTTCGAAAAACTGCTCGAAGGAATGGATT
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
* * *
41285 ATCTTGAATTCTTTAAGGAATAGAAGTTTTAA
174 GTCTTGAATACTTTAA-G----G-A-----AC
* * *
41317 AAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCA
1 AA-AA---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCA
* *
41382 CATAAATAACATTTTTATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAATCTATTT-GAAACA
56 CATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-ATATTTAG-AACA
* * * * * * * * *
41445 ATTTATGGGATTTCTCAAGCATAGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAAT
118 AATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAAT
*
41510 ACTTTATGGAAC
183 ACTTTAAGGAAC
** * * * *** * ** *
41522 TGAAG--T-T-AA----AAAAG---AACTC--GTA-AAAGTTTG--CCAACTTCGAACTTAAATA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGAC-CGAGAACAAAGAGAGAAACAA-TTCTCACATAAATA
*** * * * ** ** *
41571 TGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAAAATGAGAACTATTTAGGCCATGTGATGCAA
64 ACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGA
** * ** *
41635 TTTCCTGAGCATGGAATGTTCAGAAAATTGTGCGAAGGAATGGATCGTCTTAAATATTTAATGAA
128 TTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTC-------TTGAAT--A
41700 CTGATGTTATAGAAGAATTC
184 C---T-TTA-AG--GAA--C
* * * * * *
41720 GTAAAAGTTTGTCAAGTTCGGAAGTTTGACTGAGAACTAAGAGAGAAACTATTCTCACCTAAATA
1 --AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATA
** * * *
41785 AGTTTTTAATTCAAAAGACCCAAAGTTGTTTACAAAATGACAAATATTTAGACCAAATGATTCGA
64 ACATTTTAATTC-AAAGAACCAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGA
* * * *
41850 TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGTTCGTCTTGAATACTTTATGGA
128 TTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGA
41915 AC
193 AC
* * * * *
41917 AAAAGTTTGTCAAGTTCGAAAGATCGACCAAGAGCAAAGA-A-AAACAATTCGCGCATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
* * * * *
41980 ATTTTAATTTAAAGAA-CATAAGTTTTTTTTATAAAATGACAACTATTTAGAACAATTGATGCGA
66 ATTTTAATTCAAAGAACCA-AAG--TTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGA
*
42044 TTTCCCGAA-CATGGAATGTTCAAAAAATTACACGAAGGAATGGATCGTCTTGAATACTTTAAAG
128 TTTCCC-AAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTT----
*
42108 AAAGCGAAGTTAA
188 -AAG-G-A---AC
* * * * * * * * * ** * *
42121 AAAAGAACTCGTAAAACTTTGTCAACTTCGAAAGCTTGGCTGAGAACCAAGAGAGAAACTATTAT
1 AAAAG--TTTGT-CAAGTTCG-AAAGTTCG--A-C--CG-AGAACA--AAGAGAGAAACAATTCT
* ** * * * * *
42186 CACCA-AAAAAAGTTTTTAGTTCAAAG-ACCGAATGTTGTTTATAAAATGACAACTATTTAGACC
54 CA-CATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAAC
* * * * * *
42249 AAATGATGCGATTTCCTAAGCAAGGAATGTTTAGAAAATTTCTCGAAGGAATGGATCGTCTTGAA
117 AAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAA
* *
42314 TAATTTATGGAAC
182 TACTTTAAGGAAC
** * ** * * * *
42327 CGATGTTAT-AAAAGAACTCATAAATGTTTGTCAACTTCGTAAGTTTGACTTTGGACAA-AGAGA
1 AAAAGTT-TGTCAAG--TTC-GAAA-G--T-TCGAC--CG--AG---AAC-----A-AAGAGAGA
* * * ** * *
42390 GA-AATTATTCTCACCTAA-ATA-AGTTTTTATTTCAAAG-ACCAAAAGTTGTTTACAAAACGAC
45 AACAATT-CTCACA-TAAATA-ACA-TTTT-AATTCAAAGAACC-AAAGTTGTTTACAAAATGAC
* * * * ** * * *
42451 AATCTATTTAGAA-AAATTGATGTGATTTCCCAAGAATTGAATGTTTGAAAAATTACTCGAAGGT
104 AA-ATATTTAGAACAAA-TGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGA
* * *
42515 ATAGATCGTTTTGAATAATTTAAGGAACC
167 ATGGATCGTCTTGAATACTTTAAGGAA-C
* * * * * **
42544 GAAGTTAAAAAAGAACTTGTAAAGGTTTTTGAAGTTCGGAAGTTTGGTCC-AAAACCTAGAGAGA
1 --------AAAAG---TT-T----G----TCAAGTTCGAAAG-TTCGACCGAGAACAAAGAGAGA
* * * ** * *
42608 AACTATTATCACCTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAAAATGACAACTA
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* *** * *** * * * *
42672 TTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGGAATGTATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
*
42737 GTCTTGAATACTTTAAGCAAC
174 GTCTTGAATACTTTAAGGAAC
* * * ** * *
42758 CAAAGTTATAAAATAAGTCGTAAAAGTTTTTTAACTTCGAAAGTTGGGCTTACAACCAAGAGAGA
1 AAAAG-T-T----T--GTC----AAG---------TTCGAAAGTTCGACCGAGAACAAAGAGAGA
* * ** * *
42823 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATTACAACTA
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* * * * * * * * *
42887 -TTAGACCGAATGATGCAATTTCTCGAGCATCGAATGTTCGAAAATTTGTCA--AAGGAATAGAT
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTG-CACGAAGGAATGGAT
*
42949 CGCCTTGAATACTTTAAGGAATC
173 CGTCTTGAATACTTTAAGGAA-C
* * *
42972 GAAGTTATGAAGGAACTTGTATAAGTTTTTCAAGTTCGTAAGTTCGGCCAAGAACCAAA-AGAGA
1 --A---A--AA-G----T-T-T--G----TCAAGTTCGAAAGTTCGACCGAGAA-CAAAGAGAGA
* ** ** * *
43036 AACAATTCTCACCTAAATAAGTTTTTAATTGGAA-AACCAAAAGTAGTTTACAAAAT-AAAAACT
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAA-T
* * * * * * **** *
43099 ATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTACAGAAAATTTTTTGAAGGAATGTAT
108 ATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGAT
*
43164 CGTCTTGAATTCTTTAATGAACGAAAGC
173 CGTCTTGAATACTTTAA-G---G-AA-C
* * * * * * *
43192 TATAAAAGCACTTGTAAAAGTTTGTCAAGTTTAAAGTTCGGCCGAGATCCAGGAAAGAAACAATT
1 ---AAAAG--TTTGT-CAAG--T-TC--G---AAAGTTCGACCGAGAACAAAGAGAGAAACAATT
* ** * * *
43257 CTCACATAAAGAATTTTTTAATTCAAAG-ACCAAAAGTTGTTTACACAATGACAACTATTTAGAC
52 CTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAA
** * * * *
43321 CAAATGATATGATTTCCCAAGCATGAAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGA
116 CAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGA
43386 ATACTTTAAGGAACCAAATTTATAAAAGAACTC
181 ATACTTTAA-G----------------GAA--C
* * * * *
43419 GAAAAAGTTTGTCAACTTCGAAAGTTCGGCCCA-AAGCCAAGAGAGAAACAATTCTCACCTAAAT
1 --AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAA-CAAAGAGAGAAACAATTCTCACATAAAT
* ** * ** * * * * ** *
43483 TAGTTTTTAATTCAAAG-GCCAAAACTATTTAGACCAAATGATGC-GAT-TTCTCG-AGGATTGG
63 AACATTTTAATTCAAAGAACCAAAGTTGTTT--ACAAAATGA--CAAATATT-TAGAACAAAT-G
* * * ** * * * * **
43544 ATGTTCAGAAAATTGCTCGAAGGAATGG-ATCGTCTTGAATACTT----TAAGGAAT-CAAAGT-
122 ATG--C-G---ATTTC-CCAA-GCATGGAAT-GT-TCAAAAAATTGCACGAAGGAATGGATCGTC
* *****
43602 TATGAA-A---GAACTCGT
177 T-TGAATACTTTAAGGAAC
* * * * * * *
43617 AAAAGTTTTTCTAGTTTGTAAA-TTCGGCC--G--CAAA-AGCGAAACAATTCCCACCTAAATAA
1 AAAAGTTTGTCAAGTTCG-AAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAA
** * * * * * *
43676 GTTTTTAATTGAAA-AACCAAAAG-TATTTACAAAATGACAACTATTTAGACCTAATGATGTGAT
65 CATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGAT
* * * * * * * *
43739 TTCCCAAGTAT-GAACTGTAT-GAAAATTTGCTCGAAGGAATGAATCATCTTAAATACTCTAAGG
129 TTCCCAAGCATGGAA-TGT-TCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGG
43802 AAC
192 AAC
* *
43805 AAATGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGATCGAGAACTAAGAGAGA
1 -----------AA-AA---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGA
* * * *
43870 AACAATTCTCACATAAATAACATTTTTATTCAAA-CACCTGAAGTTGTTTACAAAATGACAATCT
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-AT
* * * ** * *
43934 ATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGTT-TGAAAATTGCTCGAAGGAATGGAC
108 ATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGAT
*
43998 CGTGTTGAATACTTT-AGTGAAC
173 CGTCTTGAATACTTTAAG-GAAC
* * * * *
44020 AAAATTTATAAAAGAACTTGTAAAATTTGTCAAGTT-TAATGTTCGACTGAGAACCAAGAAAGAA
1 -----------AA-AA---G-----TTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAA
* ** *
44084 ACAATTCTCACATAAAGAATTTTTTAATTCAAAG-ACCAAA--AG--T------T------T-TT
46 ACAATTCTCACATAAATAACATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAATATT
* * * * * * * * *
44131 TAGACCGAATGATACGATTTTCCAAGCATGTATTGTTCGAAAAACTGCTCGAAGGAATGGATCGT
111 TAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGT
44196 CTTGAATACTTTAAGGAAC
176 CTTGAATACTTTAAGGAAC
* * *
44215 AAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACAGAGAACCAAGAGAGAA
1 ----------AA-AA---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAA
* * * *
44280 ACAATTCTCAGATAAATAACATTTTTATTCAAAG-ACCAAAAGTTGTTTACAAAATAACAATCTA
46 ACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-ATA
* * * * ** * * *
44344 TTTAGAACAATTTATGCGATTTCCTAAGTATGGAATGTT-TGAAAATTGCTCAAAAGAATGGATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
* *
44408 GTGTTGAATACTTTAATGAAC
174 GTCTTGAATACTTTAAGGAAC
* * * * *
44429 AAAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTAACGTTCAACCGAGAACCAAGAAAGAA
1 AAAAG---T--------TTGT-CAAG--T-TC--G---AAAGTTCGACCGAGAACAAAGAGAGAA
* * * * * *
44494 ACAATTCTCACATAAAGAA-TTTGTTAATTCAAAGAACAAAACTTGTTTACAAAATCACAACTAT
46 ACAATTCTCACATAAATAACATT-TTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAATAT
* * * *
44558 TTA-AACGAAATGATGCGATTT-CCAAGCATGTAATGTTCGAAAAACTGCTCGAAGGAATGGATC
110 TTAGAAC-AAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
*
44621 ATCTTGAATACTTTAAGGAAC
174 GTCTTGAATACTTTAAGGAAC
* * * *
44642 AAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGTTGAGAACCAAGAGAGA
1 AAAAG-TTT----G---TC----AAGTTCG-AAAGTTC-G-A---C---CGAGAACAAAGAGAGA
* * * *
44707 AATAATTCTCAGATAAATAACATTTTTATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAATCT
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-AT
* * * * * * *
44771 ATTTGGAACAATTTATGTGATATCCCAAGCATAGAATGTTC-AAAAATTGCTCGAAGGAATGGAT
108 ATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGAT
* *
44835 CGTGTTGAATACTTTATGGAACTGAAGTTAAAA
173 CGTCTTGAATAC-TT-T--AA--G--G---AAC
* * * * * * * * *
44868 AAGAACTCGTAAAAGTTTATCAACTTCGAAAGTTTGGCTGAGAACCAAGAGAGGAACTATTATCA
1 AA-AA---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCA
*** * * * * **
44933 CATAAATATGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAAAATGAGAACTATTTAGACCATG
56 CATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAAA
* ** * * *
44997 TGATGCAATTTCCTGAGCATGGAATTTTCGAAAAATTGTACGAAGGAATGGATCGTCTCAAATAC
120 TGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCG-------T-C
*
45062 TTTAATGAACTAACGTTATAGAAGAATTC
177 --T--TGAA-T-AC-TT-TA-AGGAA--C
* * * * *
45091 GTAAAAGTTTGTCAAGTTC-ATAAATTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAAT
1 --AAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAAT
** * * * * **
45155 AAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAGATGGCAAATATTTAGACCAAATGATTTGA
63 AACATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGA
* * * *
45220 TTTCCCAAGCATGGAATGTTCGAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTATGGA
128 TTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGA
45285 AC
193 AC
* *
45287 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACAAAGA-A-AATACAATTCTCGCATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAA-ACAATTCTCACATAAATAA
* * * *
45350 CATTTTAATTTAAAGAA-CATAAGTTTTTTTTACAAAATGACAATCTATTTAGAACAATTGATGC
65 CATTTTAATTCAAAGAACCA-AAG--TTGTTTACAAAATGACAA-ATATTTAGAACAAATGATGC
* *
45414 GATTTCCCGAA-CATGGAATGTTCGAAAAATTGCACGAAGGAATAGATCGTCTTGAATACTTTAA
126 GATTTCCC-AAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAA
45478 GGAACC
190 GGAA-C
* * * *
45484 GAAGTTAAAAAAGAACTCATAAAATTTGTCAACTTCGGAAGTT-TAGCCGAGAACCAAGAGAGAA
1 --------AAAAG-----------TTTGTCAAGTTCGAAAGTTCGA-CCGAGAACAAAGAGAGAA
* * ** * * * *
45548 ACTATTATCACCA-AAATAAGTTTTTAGTTCAAAG-ACCGAATGTTGTTTAAAAAATGACAACTA
46 ACAATTCTCA-CATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* * * ** * * ** *
45611 TTTAGACCAATTGATGCAATTTCCTGAGCATGGAATGTTCAGAAAATTACTTG-A-CAATGGATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
*
45674 GTCTTGAATAATTTATGGAACCGATGTTATTAAAGAACTC
174 GTCTTG----A---AT---A-C-----T-TTAAGGAA--C
* * **** ** * *
45714 AGAAAAGTTTGTCAACTTCGGAAGTTCGAATTTGAACAAAGAGAGAAATTATTCTCACCTAAATT
1 A-AAA-GTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATA
** * * *
45779 AGTTTTTAATTCAAAG-ACAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGAT
64 ACATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGAT
* * * * * *
45843 TTCTCTAGTATGGAATGTTC-GAAAATTG-ATTGAAGGAATGGATCGTCTTAAATACTTTAAGGA
129 TTCCCAAGCATGGAATGTTCAAAAAATTGCA-CGAAGGAATGGATCGTCTTGAATACTTTAAGGA
45906 ACC
193 A-C
* * *
45909 AAAGTTATAAAAGAACTTGTAAAATTTTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGAA
1 ----------AA-AA---G------TTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAA
* * * * *
45974 ACAATTATCACACAAATAAC-TTTTAAATTTAAAG-ACCAAAACTTGTTTACAAAATGACATATA
46 ACAATTCTCACATAAATAACATTTT-AATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* * * * * * *
46037 TTTAGACCGAATGATTCGATTTCCTAAGCATGGAATGTTCAGAAAATGGCTCGAAGGAATGGATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
* *
46102 GTCTTGAATACTTTATGGAAT
174 GTCTTGAATACTTTAAGGAAC
* * *
46123 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAAAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
* * * * * *
46188 TTTTTAATTTAAAGAACAAAAGTTTTTTACAAAATGA-AAATCTATTTAGAACAATTGATGCAAT
66 ATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAA--TATTTAGAACAAATGATGCGAT
* * ** *
46252 TTCCCGAA-CATGGAAGGTTCGAGTAATTGCATGAAGGAATGGATCGTCTTCG-ATACTTTATGG
129 TTCCC-AAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTT-GAATACTTTA---
46315 CACTGAAGTTAAAAAATAACTC
189 -A--G--G---------AA--C
** * * * * *
46337 ATAAAAGTTTGTCAACTTC-AGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAA
1 A-AAAGTTT-GTCAAGTTCGA-AAGTTCGACCGAGAACAAAGAGAGAAACAATT-CTCACATAAA
** * * * *
46400 TAAGTTTTTAATTCAAAGAA-CAAATGTTCTTTATAAAATGACAACTATTTAGACCAAATGATGC
62 TAACATTTTAATTCAAAGAACCAAA-GTTGTTTACAAAATGACAAATATTTAGAACAAATGATGC
*** * * * * *
46464 GATTTCTTGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATTGTCTTGAATAATTTATG
126 GATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAG
*
46529 GATCTAAAGTTATA
191 G------A---A-C
* * * * * **
46543 AACGAACTTGTAAAAGTTTGTCAACTTCGGATGTTCGACCGTGAACCAAGAGAGAAATTATTCTC
1 AA--AA---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTC
* ** * * * *
46608 ACCTAAATAAGTTTTTAATTCAAAG-ACCAAAATTTGTTTTCAAAATGACAACTATTTAGACCAA
55 ACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAA
* * * ** * * *
46672 ATGATGCGATTTCTCGAGCATGAAATGTTCAAAAAATTGCTTGAAGGAGTGTATCGTCTTAAATA
119 ATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATA
*
46737 CTTTAATGAAC
184 CTTTAAGGAAC
** * *
46748 TGAAGTTATAAAAGAACTCGTAAAAGTTTGTCGAACTCGGAAGTTCGACCGAGAACCAAGAAAGA
1 AAAAGTT-T----G---TC----AAG--T-TCG-A-----AAGTTCGACCGAGAACAAAGAGAGA
* * * * *
46813 AACAATTCTCACATAAATAACTTTTTAATTTAAAG-GCCAAAAGTTATTTACAAAATGACAATCT
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-AT
* ** *
46877 ATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGCGAAGGAATGGAT
108 ATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGAT
*
46937 CATCTTGAATACTTTAAGGAACCC
173 CGTCTTGAATACTTTAAGGAA--C
* * * *** * * * ** *
46961 AAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTTTGTAAGTTCTACCGAGAACTTAGAGAGGAA
1 -------AAAAG--TTTGTCAA-G-TTCGAAAGTTCG--A--CCGA--GA-A-CAAAGAGAGAAA
* * * * ** * * * *
47026 CTATTATCTCCTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAACATTACAACTATT
47 CAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATT
* ** * * * ** * *
47090 T-GAACGAAATAATATGATTT-CCAGAGCATGGATTGTTCAGAAAATGGTTCGGAGGAATGAATC
111 TAGAAC-AAATGATGCGATTTCCCA-AGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
* *
47153 ATCTTGAATACTTTAAGGAAT
174 GTCTTGAATACTTTAAGGAAC
* * ** * * ** * *
47174 AAAACTAT-AAAAGAACTCGTAAAAGTTTGACCGAGAACCTAGAAAGAAACAATTCTTACATAAA
1 AAAAGTTTGTCAAG--TTCG--AAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAA
** * * * * *
47238 TAAGTTTTTATTTCAAAG-ACCAAAAGTTGTTTACAAAACGACAATCTATTTAGAACAATTGTTG
62 TAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAA-ATATTTAGAACAAATGATG
* * ** * * * *
47302 CGATTTCCCAAGAATTGAATGTTTGAAAAATTGCTCGAAGGTATAGATCGTCTTGAATAATTTAA
125 CGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAA
47367 GGAACC
190 GGAA-C
* * * * * **
47373 GAAGTTAAAAAAGAACTCGTAAAGGTTTTTG-AAGTTCAGAAGATCAGTCCAGAACCTAGAGAGA
1 --------AAAAG--TTTGTCAA-G--TTCGAAAGTTC----GA-C---CGAGAACAAAGAGAGA
** * * ** * * *
47437 AATTATTATCACCTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTATAAAATTACAACTA
45 AACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATA
* *** * *** * * * * *
47501 TTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGTAATGTATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
* *
47566 ATCTTAAATACTTTAAGGAATC
174 GTCTTGAATACTTTAAGGAA-C
* * * * * * *
47588 GAAGTTATAAAATAAGTCGTAAAAGTTTGTTAACTTCGGAAGTTCGGCCTAGAACCAAGAGAGGA
1 ----------AA-AA---GT-----TT-GTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAA
* * ** *
47653 ACTATTCTCACCTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATTA-AAACTA
46 ACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAA-TA
* * * * * ** * * *
47716 -TTAGACCGAATGATGCAATTTCTCGAGCATCAAATGTTCGAAAAATTGGA-AAAGGAATGGATC
109 TTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATC
*
47779 GCCTTGAATACTTTAAGGAATC
174 GTCTTGAATACTTTAAGGAA-C
* * *
47801 -GAAGTTATGAAAGAACTCGTATAAGTTTTTCAGATTCATAAGTTCGGCCAAGAACCAAA-AGAG
1 AAAAGTT-T----G---TC----AAG---TTC-G----A-AAGTTCGACCGAGAA-CAAAGAGAG
* ** * * * *
47864 AAACAATTCTCACCTAAATAAGTTTTTAATTGAAA-AACCAAAAGTAGTTTACAAAATAACAACT
44 AAACAATTCTCACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAAT
* * * * * * * * *
47928 ATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTATACAGAAAATTTG-TCGAAGGAATGTA
108 ATTTAGAACAAATGATGCGATTTCCCAAGCATGGAATGTTCA-AAAAATTGCACGAAGGAATGGA
*
47992 TCGTCTTGAATACTTTAATGAATGAAAGTTAT
172 TCGTCTTGAATACTTTAA-G---G--A---AC
* * * * * * * *
48024 AAAAGCACTTGTAAAAGTTTGTCAAGTTTAATGTTCGGCTGAGATCCAAGAAAGAAACAATTCTC
1 AAAAG--TTTGT-CAAG--T-TC--G---AAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTC
** ** *
48089 ACATAAATAATTTTTTAATTCAAAG-ACCAAAAGTTGTTTTGAAAATGACAAATATTTAGACCAA
55 ACATAAATAACATTTTAATTCAAAGAACC-AAAGTTGTTTACAAAATGACAAATATTTAGAACAA
* * * *
48153 ATGATTCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCTTCTTGAATA
119 ATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATA
* *
48218 CTTTATGGAAT
184 CTTTAAGGAAC
* * * *
48229 AAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAACCAGGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
* * * * * *
48294 TTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAATGACAATCTATTTAGAACAATTGATGCAAT
66 ATTTTAATTCAAAGAACCAAAG-TTGTTTACAAAATGACAA-ATATTTAGAACAAATGATGCGAT
* **
48358 TTCCCGAA-CATGGAAGGTTCAAGTAATTGCACGAAGGAATGGATCGTCTT
129 TTCCC-AAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTT
48408 CGATACATTA
Statistics
Matches: 7982, Mismatches: 1659, Indels: 2087
0.68 0.14 0.18
Matches are distributed among these distances:
179 7 0.00
180 62 0.01
181 52 0.01
182 8 0.00
183 9 0.00
184 13 0.00
185 9 0.00
186 4 0.00
187 14 0.00
188 16 0.00
189 18 0.00
190 2 0.00
191 48 0.01
192 21 0.00
193 117 0.01
194 524 0.07
195 239 0.03
196 233 0.03
197 162 0.02
198 82 0.01
199 32 0.00
200 18 0.00
201 17 0.00
202 27 0.00
203 44 0.01
204 32 0.00
205 49 0.01
206 65 0.01
207 39 0.00
208 55 0.01
209 54 0.01
210 51 0.01
211 258 0.03
212 157 0.02
213 845 0.11
214 1460 0.18
215 1919 0.24
216 690 0.09
217 90 0.01
218 89 0.01
219 52 0.01
220 20 0.00
221 34 0.00
222 41 0.01
223 40 0.01
224 38 0.00
225 34 0.00
226 27 0.00
227 13 0.00
228 8 0.00
229 17 0.00
230 3 0.00
231 6 0.00
232 2 0.00
233 2 0.00
234 4 0.00
235 7 0.00
237 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (194 bp):
AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACAAAGAGAGAAACAATTCTCACATAAATAAC
ATTTTAATTCAAAGAACCAAAGTTGTTTACAAAATGACAAATATTTAGAACAAATGATGCGATTT
CCCAAGCATGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
Found at i:38516 original size:194 final size:194
Alignment explanation
Indices: 38154--38549 Score: 528
Period size: 194 Copynumber: 2.0 Consensus size: 194
38144 AAAGAACTTC
* * *
38154 TAAAATTTTGTTAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGAAACAATTACCACATAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTACCACATAAATAA
* * * *
38219 CTTTTAAATTTAAAGACCAAAAGTAGTTTACAAAATGAAAAATATTTAGACCAAATGATTCTATT
66 CTTTTAAATTCAAAGACCAAAAGTAGTTTACAAAATGAAAAATATCTAGACCAAATGATGCGATT
* * *
38284 TCCCAAGCATGGAATGTTCAGAAAATTGCTTCAAGGAATAGATCGACTTGAATACTTTATGGAA
131 TCCCAAGCATGGAATGTACAGAAAATTGCATCAAGGAATAGATCGACTTGAATACTTTAAGGAA
* *
38348 TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACTAAGAAAGAAACAATT-CTCACCTAAATA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTAC-CACATAAATA
* * * * * *
38412 AGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGATGACAACTATCTAGACCTAATGATGCGAT
65 ACTTTTAAATTCAAAGACCAAAAGTAGTTTACAAAATGAAAAATATCTAGACCAAATGATGCGAT
* * * * *
38477 TTCTCAAGCATGGACTGTAC-GTAAAA-TGGATCGAAGGAATGGATCGTCTTGAATACTTTAAGG
130 TTCCCAAGCATGGAATGTACAG-AAAATTGCATC-AAGGAATAGATCGACTTGAATACTTTAAGG
38540 AA
193 AA
*
38542 CAAAAGTT
1 TAAAAGTT
38550 ATAAAAGAAC
Statistics
Matches: 175, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
193 6 0.03
194 169 0.97
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (194 bp):
TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTACCACATAAATAA
CTTTTAAATTCAAAGACCAAAAGTAGTTTACAAAATGAAAAATATCTAGACCAAATGATGCGATT
TCCCAAGCATGGAATGTACAGAAAATTGCATCAAGGAATAGATCGACTTGAATACTTTAAGGAA
Found at i:38964 original size:215 final size:214
Alignment explanation
Indices: 38348--41562 Score: 3201
Period size: 214 Copynumber: 15.1 Consensus size: 214
38338 CTTTATGGAA
* * * *
38348 TAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACTAAGAAAGAAACAATTCTCACCTAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * * *
38413 GTTTTTAATTCAAAGACCAAAAGTAGTTTACAAGATGACAACTATCTAGACCTAATGATGCGATT
66 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT-TTGAACAAATGATGCGATT
* * * * * *
38478 TCTCAAGCATGGACTGTACGTAAAATGGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
130 TCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
*
38543 AAAAGTTATAAAAGAACTCG
195 CAAAGTTATAAAAGAACTCG
* * *** * *
38563 TAAAAGTTTGTCAAATTC-AGAAGCTCGATTGAGAAGCAAGAAAGAAACAATTCTCACATAAATA
1 TAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATA
* *
38627 ACTTTTTAATTTAAAGGA-CAAAAGTTGTTTACAAAATGACAATCTATTTAGAAC-AAT--T--G
65 AGTTTTTAATTCAAA-GACCAAAAGTTGTTTACAAAATGACAA-CTATTT-GAACAAATGATGCG
* * * * *
38686 ATTTCCCGAGCATGCAATGTTCGGAAAATTGCGCGAAGGAATGGATCATCTTGAATACTTTAAGG
127 ATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
38751 AACCCAAGTTAAAAAAGAACTCA
192 AACCAAAGTTATAAAAGAACTCG
* * * ** * ** * *
38774 TAAATGTTTTTCAAGTTCGGAAGTT-GTGCCGAGAACTTAGAGAGGAATTATTATCACCTAAATA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCG-GCCGAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * **
38838 AGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTATTTGAATGAAATGATATGAT
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTGAA-CAAATGATGCGAT
* * * * * * **
38903 TTCCAAAGCATGGATTGTTCGGAAAATGGCTCGGAGGAATGGATTGTCTTGAATACTTTAAGTTA
129 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* **
38968 -TAAAACTATAAAAGAACTCG
194 CCAAAGTTATAAAAGAACTCG
* * * * * *
38988 TAAAAGTTTGTCAAGTTCAAAAGTTCGACCGAAAACCTAGAAAGAAACAATTCTTACATAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * *
39053 GTTTTTATTTCAAAGACCAATAGTTGTTTACAAAACGACAATCTATTTAGAACAATTGATGCGAT
66 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTT-GAACAAATGATGCGAT
* * * * * * *
39118 TTCCCAAGAATTGAATGTTTGAAAAATTTCTCGAAGGTATAGATCGTCTTGAATAATTTAAGGAA
129 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
39183 CCGAAGTTAAAAAAGAACTCG
194 CCAAAGTTATAAAAGAACTCG
* * * * * * *
39204 T-AAAGTCTTTTGAAGTTCGAAAGTTCGGTCC-AAAACCTAGAGAGAAACTATTATCACCTAAAT
1 TAAAAGT-TTGTCAAGTTCGAAAGTTCGG-CCGAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * *** *
39267 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAACCAAAGCGA
64 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTT-GAACAAATGATGCGA
*** * * * *
39332 TTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGGAATGTATCGTCTTGAATACTTTAAGGA
128 TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
39397 ATCGAAGTTATAAAATG---TCG
193 ACCAAAGTTATAAAA-GAACTCG
* * * * * ** *
39417 TAAAAGTTTGTTAACTTCGGAAGTTTGGCCTAGAACCAAGAGAGAAATTATTCTCACCTAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * * * *
39482 GTTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAATTACAACTATTAGACCGAATGATGCAATT
66 G-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTGAACAAATGATGCGATT
* * * * * * *
39547 TCTCGAGCATCGAATGTTCGGAAAATTG-TCAAAGGAATGGATCGCCTTGAATACTTTAAGGAAT
130 TCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
39611 CGAAGTTATGAAAGAACTCG
195 CAAAGTTATAAAAGAACTCG
* * * * * * * *
39631 TATAAGTTTTTTAGGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * * * *
39696 GTTTTTAATTCGAAA-ACCAAAAGTAGTTTACAAAATAACCACTATTTAGACCTAATGATGTGAT
66 GTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAACTATTT-GAACAAATGATGCGAT
* * * * * *
39760 TTCCCAAGCATGGACTGTACAGAAAATTTG-TCGAAGAAATGTATCGTCTTGAATACTTTAATGA
129 TTCCCAAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
39824 ACGAAAGTTATAAAAGCACTTG
193 ACCAAAGTTATAAAAGAACTCG
* * *
39846 TAAAAGTTTGTCAAGTT-TAAAGTTCGGCCGAGATCCAAGAAAGAAACAATTCTCACATAAAGT-
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAA-TA
* * *
39909 ATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATACGAT
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTT-GAACAAATGATGCGAT
* * * *
39974 TTCCCAAGCATGAAATGTT-TAGAAAATTGTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGA
129 TTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
40038 ACCAAAGTTATAAAAGAACTCG
193 ACCAAAGTTATAAAAGAACTCG
* * * * * * * *
40060 AAAAAGTTTGTCAACTTCGAAATTTTGGCCCA-AAGCCAAGAGAGAAATAATTCTCACCTAAATT
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA-CCAAGAGAGAAACAATTCTCACATAAATA
* *
40124 AGTTTTTAATTCAAAGACC-AAA-------AC----T----A-T-TTAGACCAAATGATGCGATT
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTGAACAAATGATGCGATT
* * *
40171 TCTCGAGGATTGG-ATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
130 TCCCAAGCA-TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
40235 TCAAAGTTATGAAAGAACTCG
194 CCAAAGTTATAAAAGAACTCG
* * ** * * * * *
40256 TAAAAATTTTTCTGGTTTGTAAGTTCGGCCGAGAACCAAAAGAGAAACAATTCCCACCTAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * * * *
40321 GTTTTTAATTGAAAAACCAAAAG-TATTTACAAAATGACAACTATTTAGACCTAATGATGTGATT
66 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTT-GAACAAATGATGCGATT
* * * * * *
40385 TCCCAAGTAT-GAACTGTACGAAAAATTGCTCGAAGGAATGAATCATCTTAAATACTCTAAGGAA
130 TCCCAAGCATGGAA-TGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
40449 -CAAATTTTTAAAAGAACTCG
194 CCAAAGTTATAAAAGAACTCG
* *
40469 TAAAAGTTTGTCAAGTTCGAAAGTTCTGTCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * * *
40534 CATTTTT-ATTGAAACACC-AAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTTAT-CTG
66 -GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTT-GAACAAATGATGC-G
* * * * * *
40596 ATTTCCCAAGAATGAAATGTTTG-AAAATTGCTCGAAGGAATGGACCGTGTTGAATACTTTAATG
127 ATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* **
40660 AACAAAAGTTATAAAAGAACTTT
192 AACCAAAGTTATAAAAGAACTCG
* * * * * *
40683 TAAAAGTTTGTCAAGTT-TACTA-TTCGACCGAGAACCAGGAAAGAAACAATTCTCACATAAAGA
1 TAAAAGTTTGTCAAGTTCGA-AAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * * *
40746 ATTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATCACAACTGTTTAGACCAAATGATACGAT
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTT-GAACAAATGATGCGAT
* * *
40811 TTCCCAAGCATGTAATGTTCGAAAAACTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
129 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
40876 CAAAAGTTTTAAAAGAACTCG
194 CCAAAGTTATAAAAGAACTCG
* * * *
40897 TAAAAGTTTGTTAAGTTCAAAAGTTCGGTCAAGAACCAAGAGAGAAACAATTCTCACATAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * * * * *
40962 CATTTTT-ATTCAAACACCAAAATTTATTTACAAAATGACAATATATTTAGAACAATTTATGCGA
66 -GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTT-GAACAAATGATGCGA
* * * * * * *
41026 TTTCCCAAGTATGGAATGTTTG-AAAATTGCTCAAAGGAATGGACCGTGTTGAATACTGTAATGA
128 TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
41090 ACAAAAGTTATAAAAGAATTTG
193 ACCAAAGTTATAAAAGAACTCG
* * * * *
41112 TAAAAGTTTGTCAAGTT-GAATGTTCGACCGAGAACCACGAAAGAAACAATTCTCACATAAAGAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * *
41176 -TTTGTTAATTCAAAGACCAAAAGTTGTTTACAAAATCATAACTATTTGGACCAAATGATGCGAT
66 GTTT-TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTT-GAACAAATGATGCGAT
* * ** *
41240 TTCCCAAGCATGTAATGTTCGAAAAACTGCTCGAAGGAATGGATTATCTTGAATTCTTTAAGGAA
129 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
41305 -TAGAAGTTTTAAAAGAACTCG
194 CCA-AAGTTATAAAAGAACTCG
*
41326 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
1 TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* * * *
41391 CATTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTGAAACAATTTATGGGA
66 -GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTG-AACAAATGATGCGA
* * * * *
41455 TTTCTCAAGCATAGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTGTTGAATACTTTATGGA
128 TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** *
41520 ACTGAAGTTAAAAAAGAACTCG
193 ACCAAAGTTATAAAAGAACTCG
* *
41542 TAAAAGTTTGCCAACTTCGAA
1 TAAAAGTTTGTCAAGTTCGAA
41563 CTTAAATATG
Statistics
Matches: 2466, Mismatches: 450, Indels: 167
0.80 0.15 0.05
Matches are distributed among these distances:
196 150 0.06
197 10 0.00
198 1 0.00
199 1 0.00
203 3 0.00
207 3 0.00
209 3 0.00
210 9 0.00
211 159 0.06
212 62 0.03
213 387 0.16
214 777 0.32
215 634 0.26
216 261 0.11
217 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (214 bp):
TAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTGAACAAATGATGCGATTT
CCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
AAAGTTATAAAAGAACTCG
Found at i:42298 original size:216 final size:215
Alignment explanation
Indices: 42007--43506 Score: 1559
Period size: 215 Copynumber: 7.0 Consensus size: 215
41997 ATAAGTTTTT
* * * * *
42007 TTTATAAAATGACAACTATTTAGAACAATTGATGCGATTTCCCGAA-CATGGAATGTTCAAAAAA
1 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTTAGAAAA
* * * * *
42071 TTACACGAAGGAATGGATCGTCTTGAATACTTTAAAGAAAGCGAAGTTAAAAAAGAACTCGTAAA
65 TTTCTCGAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * * * *
42136 ACTTTGTCAACTTCGAAAGCTT-GGCTGAGAACCAAGAGAGAAACTATTATCACCAAAAAAAGTT
129 AGTTTGTCAACTTCGAAAG-TTCGGCTCAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTT
* * *
42200 TTTAGTTCAAAGACCGAATGTTG
193 TTTAATTCAAAGACCAAAAGTTG
* * *
42223 TTTATAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCAAGGAATGTTTAGAAAAT
1 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTTAGAAAAT
* * * * *
42288 TTCTCGAAGGAATGGATCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCATAAATG
66 TTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * ** * * *
42353 TTTGTCAACTTCGTAAGTTTGACTTTGGACAAAGAGAGAAATTATTCTCACCTAAATAAGTTTTT
131 TTTGTCAACTTCGAAAGTTCGGCTCAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT
*
42418 ATTTCAAAGACCAAAAGTTG
196 AATTCAAAGACCAAAAGTTG
* * * * *
42438 TTTACAAAACGACAATCTATTTAGA-AAAATTGATGTGATTTCCCAAGAATTGAATGTTT-GAAA
1 TTTACAAAATGACAA-CTATTTAGACCAAA-TGATGCGATTTCCCAAGCATGGAATGTTTAG-AA
* * * * * * *
42501 AATTACTCGAAGGTATAGATCGTTTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTTGTAA
63 AATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* * * * * * * * *
42566 AGGTTTTTGAAGTTCGGAAGTTTGG-TCCAAAACCTAGAGAGAAACTATTATCACCTAAATAAGT
128 AAGTTTGTCAACTTCGAAAGTTCGGCT-CAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGT
42630 TTTTAATTCAAAGACCAAAAGTTG
192 TTTTAATTCAAAGACCAAAAGTTG
* *** * *** * * * *
42654 TTTATAAAATGACAACTATTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAAT
1 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTTAGAAAAT
* * * * * *
42719 TGCTCGAAGGAATGTATCGTCTTGAATACTTTAAGCAACCAAAGTTATAAAATAAGTCGTAAAAG
66 TTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * * *
42784 TTTTTTAACTTCGAAAGTTGGGCTTACAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT
131 TTTGTCAACTTCGAAAGTTCGGCTCAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT
42849 AATTCAAAGACCAAAAGTTG
196 AATTCAAAGACCAAAAGTTG
* * * * * * *
42869 TTTACAAAATTACAACTA-TTAGACCGAATGATGCAATTTCTCGAGCATCGAATG-TTCGAAAAT
1 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTTAGAAAAT
* * * * * * * * *
42932 TTGTCAAAGGAATAGATCGCCTTGAATACTTTAAGGAATCGAAGTTATGAAGGAACTTGTATAAG
66 TTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * * *
42997 TTTTTCAAGTTCGTAAGTTCGGC-CAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTT
131 TTTGTCAACTTCGAAAGTTCGGCTC-AGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTT
* *
43061 TAATTGGAAA-ACCAAAAGTAG
195 TAATT-CAAAGACCAAAAGTTG
* * * * * **
43082 TTTACAAAATAAAAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTACAGAAAAT
1 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTTAGAAAAT
* * * * * * * *
43147 TTTTTGAAGGAATGTATCGTCTTGAATTCTTTAATGAA-CGAAAGCTATAAAAGCACTTGTAAAA
66 TTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACTCGTAAAA
* * * * * * * * *
43211 GTTTGTCAAGTT-TAAAGTTCGGC-CGAGATCCAGGAAAGAAACAATTCTCACATAAAGAATTTT
130 GTTTGTCAACTTCGAAAGTTCGGCTC-AGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTT
43274 TTAATTCAAAGACCAAAAGTTG
194 TTAATTCAAAGACCAAAAGTTG
* ** *
43296 TTTACACAATGACAACTATTTAGACCAAATGATATGATTTCCCAAGCATGAAATGTTTAGAAAAT
1 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTTAGAAAAT
* * * *
43361 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAATTTATAAAAGAACTCGAAAAAG
66 TTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * *
43426 TTTGTCAACTTCGAAAGTTCGGCCCA-AAGCCAAGAGAGAAACAATTCTCACCTAAATTAGTTTT
131 TTTGTCAACTTCGAAAGTTCGGCTCAGAA-CCAAGAGAGAAACTATTCTCACCTAAATAAGTTTT
*
43490 TAATTCAAAGGCCAAAA
195 TAATTCAAAGACCAAAA
43507 CTATTTAGAC
Statistics
Matches: 1054, Mismatches: 211, Indels: 39
0.81 0.16 0.03
Matches are distributed among these distances:
213 145 0.14
214 235 0.22
215 410 0.39
216 264 0.25
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTTAGAAAAT
TTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
TTTGTCAACTTCGAAAGTTCGGCTCAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTT
AATTCAAAGACCAAAAGTTG
Found at i:43158 original size:428 final size:427
Alignment explanation
Indices: 41917--48720 Score: 5814
Period size: 428 Copynumber: 16.1 Consensus size: 427
41907 TTTATGGAAC
* * * * * * * *
41917 AAAAGTTTGTCAAGTTCGAAAGATCGACCAAG-AGCAA-AGAAAAACAATTCGCGCATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * * * * * *
41980 ATTTTAATTTAAAGAACATAAGTTTTTTTTATAAAATGACAACTATTTAGAACAATTGATGCGAT
66 TTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAACTATTTAGACCAA-TGATGCGAT
* * * * *
42045 TTCCCGAACATGGAATGTTCAAAAAATTACACGAAGGAATGGATCGTCTTGAATACTTTAAAGAA
128 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT-AAGGA
* * * * *
42110 AGCGAAGTTAAAAAAGAACTCGTAAAACTTTGTCAACTTCGAAAGCTT-GGCTGAGAACCAAGAG
192 A-CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG-TTCGGCCGAGAACCAAGAG
* * * * * * * * * *
42174 AGAAACTATTATCACCAAAAAAAGTTTTTAGTTCAAAGACCGAATGTTGTTTATAAAATGACAAC
255 AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAAC
* * * *
42239 TATTTAGACCAAATGATGCGATTTCCTAAGCAAGGAATGTTTAGAAAATTTCTCGAAGGAATGGA
320 TATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
* * * * *
42304 TCGTCTTGAATAATTTATGGAACCGATGTTATAAAAGAACTCAT
384 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *** * * **
42348 AAATGTTTGTCAACTTCGTAAGTTTGACTTTGGACAAAGAGAGAAATTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * ** *
42413 TTTTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTATTTAGAAAAATTGATGTGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAA-TGATGCGATT
* * * * * * * * *
42478 TCCCAAGAATTGAATGTTTGAAAAATTACTCGAAGGTATAGATCGTTTTGAATAATTTAAGGAAC
129 TCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-
* * * * * * * *
42543 CGAAGTTAAAAAAGAACTTGTAAAGGTTTTTGAAGTTCGGAAGTTTGGTCC-AAAACCTAGAGAG
193 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGG-CCGAGAACCAAGAGAG
* * * * *
42607 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTA
257 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAACTA
** * *** * * * *
42672 TTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGGAATGTATC
322 TTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* * *
42737 GTCTTGAATACTTTAAGCAACCAAAGTTATAAAATAAGTCGT
386 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * ** * *
42779 AAAAGTTTTTTAACTTCGAAAGTTGGGCTTACAACCAAGAGAGAAACTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* *
42844 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAACTA-TTAGACCGAATGATGCAATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC-AATGATGCGATTT
* * * * * *
42908 CTCGAGCATCGAATGTTCGAAAATTTG-TCAAAGGAATAGATCGCCTTGAATACTTTAAGGAATC
130 CCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-C
* * * * * * * *
42972 GAAGTTATGAAGGAACTTGTATAAGTTTTTCAAGTTCGTAAGTTCGGCCAAGAACCAAAAGAGAA
194 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAA
* *
43037 ACAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAAAAGTAGTTTACAAAATAAAAACTAT
259 ACAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATAAAAACTAT
* * * ** * *
43101 TTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTACAGAAAATTTTTTGAAGGAATGTATCG
323 TTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCG
* * * * * *
43166 TCTTGAATTCTTTAATGAACGAAAGCTATAAAAGCACTTGT
387 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * *
43207 AAAAGTTTGTCAAGTT-TAAAGTTCGGCCGAGATCCAGGAAAGAAACAATTCTCACATAAAGAAT
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* **
43271 TTTTTAATTCAAAGACCAAAAGTTGTTTACACAATGACAACTATTTAGACCAAATGATATGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC-AATGATGCGATTT
* * *
43336 CCCAAGCATGAAATGTT-TAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
130 CCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-
* * * * * *
43400 CAAATTTATAAAAGAACTCGAAAAAGTTTGTCAACTTCGAAAGTTCGGCCCA-AAGCCAAGAGAG
193 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAA-CCAAGAGAG
* *
43464 AAACAATTCTCACCTAAATTAGTTTTTAATT-------C-AAAG--G----C-----CAAAACTA
257 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAACTA
* * *
43510 TTTAGACCAAATGATGCGATTTCTCGAGGATTGG-ATGTTCAGAAAATTGCTCGAAGGAATGGAT
322 TTTAGACC-AATGATGCGATTTCCCAAGCA-TGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* *
43574 CGTCTTGAATACTTTAAGGAATCAAAGTTATGAAAGAACTCGT
385 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
43617 AAAAGTTTTTCTAGTTTGTAAA-TTCGGCC--G---CAAAAGCGAAACAATTCCCACCTAAATAA
1 AAAAGTTTGTCAAGTTCG-AAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAA
* * * *
43676 GTTTTTAATTGAAAAACCAAAAG-TATTTACAAAATGACAACTATTTAGACCTAATGATGTGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC-AATGATGCGATT
* * * * * * *
43740 TCCCAAGTAT-GAACTGTAT-GAAAATTTGCTCGAAGGAATGAATCATCTTAAATACTCTAAGGA
129 TCCCGAGCATGGAA-TGT-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * ** *
43803 ACAAATGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGATCGAGAACTAAGAGA
192 ACGAA-GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGA
* * * ** * *
43868 GAAACAATTCTCACATAAATAACATTTTT-ATTCAAACACCTGAAGTTGTTTACAAAATGACAAT
256 GAAACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAA
* * * *
43932 CTATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGTT-TGAAAATTGCTCGAAGGAATGG
319 CTATTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGG
* * * * *
43996 ACCGTGTTGAATACTTT-AGTGAACAAAATTTATAAAAGAACTTGT
383 ATCGTCTTGAATACTTTAAG-GAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
44041 AAAA-TTTGTCAAGTT-TAATGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAGAAT
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * *
44104 TTTTTAATTCAAAGACCAAAAGTT-TTT----TA-GAC--C------G---AATGATACGATTTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAATGATGCGATTTC
* * * * *
44152 CCAAGCATGTATTGTTCGAAAAACTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAA
131 CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACGA
* * *
44217 AGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGACAGAGAACCAAGAGAGAAAC
196 AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAAC
** * *
44282 AATTCTCAGATAAATAACATTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAATAACAATCTATT
261 AATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAA-AAACTATT
* * * * * * *
44346 TAGAACAATTTATGCGATTTCCTAAGTATGGAATGTT-TGAAAATTGCTCAAAAGAATGGATCGT
324 TAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGT
* * * *
44410 GTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTTGT
388 CTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
44450 AAAAGTTTGTCAAGTT-TAACGTTCAACCGAGAACCAAGAAAGAAACAATTCTCACATAAAGAA-
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * * * *
44513 TTTGTTAATTCAAAGAACAAAACTTGTTTACAAAATCACAACTATTTAAACGAAATGATGCGATT
66 TTT-TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAC-CAATGATGCGATT
* * * *
44578 T-CCAAGCATGTAATGTTCGAAAAACTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
129 TCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * **
44642 AAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGTTGAGAACCAAGAGAGA
194 -GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGA
* ** * * *
44707 AATAATTCTCAGATAAATAACATTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCT
258 AACAATTCTCACCTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAACT
* * * * * *
44771 ATTTGGAACAATTTATGTGATATCCCAAGCATAGAATGTTCA-AAAATTGCTCGAAGGAATGGAT
321 ATTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * ** *
44835 CGTGTTGAATACTTTATGGAACTGAAGTTAAAAAAGAACTCGT
385 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * * * *
44878 AAAAGTTTATCAACTTCGAAAGTTTGGCTGAGAACCAAGAGAGGAACTATTATCACATAAATATG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * * *
44943 TTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGAGAACTATTTAGACCATGTGATGCAATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA-ATGATGCGATTT
* * ** *
45008 CCTGAGCATGGAATTTTCGAAAAATTG-TACGAAGGAATGGATCGTCTCAAATACTTTAATGAAC
130 CCCGAGCATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * ** * * *
45072 TAACGTTATAGAAGAATTCGTAAAAGTTTGTCAAGTTCATAAATTCGACTGAGAACCAAGAGAGA
194 GAA-GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGA
* * * **
45137 AACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAGATGGCAAA-TA
258 AACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAACTA
** *
45201 TTTAGACCAAATGATTTGATTTCCCAAGCATGGAATGTTC-GAAAAATTTCTCGAAGGAATGGAT
322 TTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGAT
*
45265 CGTCTTGAATAC--T------------TTAT---GGAA--C--
385 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * *
45287 AAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAA-CAA-AGAAAATACAATTCTCGCATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAA-ACAATTCTCACCTAAATAA
** * * * * *
45350 CATTTTAATTTAAAGAACATAAGTTTTTTTTACAAAATGACAATCTATTTAGAACAATTGATGCG
65 GTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAA-CTATTTAGACCAA-TGATGCG
* * *
45415 ATTTCCCGAACATGGAATGTTCGAAAAATTGCACGAAGGAATAGATCGTCTTGAATACTTTAAGG
126 ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * **
45480 AACCGAAGTTAAAAAAGAACTCATAAAA-TTTGTCAACTTCGGAAGTTTAGCCGAGAACCAAGAG
191 AA-CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAG
* * * * * * * * *
45544 AGAAACTATTATCACCAAAATAAGTTTTTAGTTCAAAGACCGAATGTTGTTTAAAAAATGACAAC
255 AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAAC
* ** * * *
45609 TATTTAGACCAATTGATGCAATTTCCTGAGCATGGAATGTTCAGAAAATTACTTG-A-CAATGGA
320 TATTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
* * * * *
45672 TCGTCTTGAATAATTTATGGAACCGATGTTATTAAAGAACTCAG-
384 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC-GT
* * **** * ** *
45716 AAAAGTTTGTCAACTTCGGAAGTTCGAATTTGAACAAAGAGAGAAATTATTCTCACCTAAATTAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
45781 TTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC-AATGATGCGATTT
* * * * * *
45845 CTCTAGTATGGAATGTTCG-AAAATTGATTGAAGGAATGGATCGTCTTAAATACTTTAAGGAACC
130 CCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-C
* * * * ** *
45909 AAAGTTATAAAAGAACTTGTAAAATTTTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAAAGAA
194 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAA
* * * * * * *
45974 ACAATTATCACAC-AAATAACTTTTAAATTTAAAGACCAAAACTTGTTTACAAAATGACATA-TA
259 ACAATTCTCAC-CTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAACTA
* * *
46037 TTTAGACCGAATGATTCGATTTCCTAAGCATGGAATGTTCAGAAAATGGCTCGAAGGAATGGATC
322 TTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
*
46102 GTCTTGAATAC--T------------TTAT---GGAA----T
386 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * *
46123 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAAAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * * * * *
46188 TTTTTAATTTAAAGAACAAAAGTTTTTTACAAAATGAAAATCTATTTAGAACAATTGATGCAATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCAA-TGATGCGATT
* * ** * *
46253 TCCCGAACATGGAAGGTTCGAGTAATTGCAT-GAAGGAATGGATCGTCTTCG-ATACTTTATGGC
129 TCCCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTT-GAATACTTTAAGGA
* * * * *
46316 ACTGAAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGA
192 AC-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGA
* * * * * * *
46381 GAAACTATTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAAC
256 GAAACAATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAAC
*** * *
46445 TATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGA
320 TATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
* * * * * * *
46510 TTGTCTTGAATAATTTATGGATCTAAAGTTATAAACGAACTTGT
384 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * **
46554 AAAAGTTTGTCAACTTCGGATGTTCGACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* *
46619 TTTTTAATTCAAAGACCAAAATTTGTTTTCAAAATGACAACTATTTAGACCAAATGATGCGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC-AATGATGCGATTT
* * * * * * * *
46684 CTCGAGCATGAAATGTTCAAAAAATTGCTTGAAGGAGTGTATCGTCTTAAATACTTTAATGAACT
130 CCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-
* * *
46749 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCGAA-CTCGGAAGTTCGACCGAGAACCAAGAAAGA
194 GAAGTTATAAAAGAACTCGTAAAAGTTTGTC-AAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGA
* * * * * * *
46813 AACAATTCTCACATAAATAACTTTTTAATTTAAAGGCCAAAAGTTATTTACAAAATGACAATCTA
258 AACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAACTA
* * * * *
46878 TTTAGAACAAT--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGCGAAGGAATGGATCA
322 TTTAGACCAATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCG
* *
46939 TCTTGAATACTTTAAGGAACCCAAGTTAAAAAAGAACTCGT
387 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * ** * * * *
46980 AAATGTTTTTCAAGTTTGTAAGTTCTACCGAGAACTTAGAGAGGAACTATTATCTCCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * * * * **
47045 TTTTTAATTCAAAGACCAAAAGTTGTTTATAACATTACAACTATTT-GAACGAAATAATATGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-AC-CAATGATGCGATT
* * * * * * *
47109 TCCAGAGCATGGATTGTTC-AGAAAATGGTTCGGAGGAATGAATCATCTTGAATACTTTAAGGAA
129 TCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
** ** * *
47173 TAAAACTATAAAAGAACTCGTAAAA----GT----TT--G-A------CCGAGAACCTAGAAAGA
193 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGA
* * * * * *
47221 AACAATTCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAACGACAATCTA
258 AACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-TAAAAACTA
* * * * * * *
47286 TTTAGAACAATTGTTGCGATTTCCCAAGAATTGAATGTT-TGAAAAATTGCTCGAAGGTATAGAT
322 TTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGAT
* * *
47350 CGTCTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTCGT
385 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * ** *
47393 AAAGGTTTTTGAAGTTC-AGAAGATCAGTCC-AGAACCTAGAGAGAAATTATTATCACCTAAATA
1 AAAAGTTTGTCAAGTTCGA-AAGTTC-GACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * ** *
47456 AGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTATTTAGACCAACCAAAGCGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA-TGATGCGAT
* * * * * * * * *
47521 TTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGTAATGTATCATCTTAAATACTTTAAGGAA
128 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * *
47586 TCGAAGTTATAAAATAAGTCGTAAAAGTTTGTTAACTTCGGAAGTTCGGCCTAGAACCAAGAGAG
193 -CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAG
* * *
47651 GAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAACTA
257 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAACTA
* * * ** ***
47716 -TTAGACCGAATGATGCAATTTCTCGAGCATCAAATGTTC-GAAAAATTG-GAAAAGGAATGGAT
322 TTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGAT
* * * *
47778 CGCCTTGAATACTTTAAGGAATCGAAGTTATGAAAGAACTCGT
385 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
47821 ATAAGTTTTTC-AGATTC-ATAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAATA
1 AAAAGTTTGTCAAG-TTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * *
47884 AGTTTTTAATTGAAAAACCAAAAGTAGTTTACAAAATAACAACTATTTAGACCTAATGATGTGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC-AATGATGCGAT
* * * * * * *
47949 TTCCCAAGCATGGACTATACAGAAAATTTG-TCGAAGGAATGTATCGTCTTGAATACTTTAATGA
128 TTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * * *
48013 ATGAAAGTTATAAAAGCACTTGTAAAAGTTTGTCAAGTT--TAATGTTCGGCTGAGATCCAAGAA
192 ACG-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAA-GTTCGGCCGAGAACCAAGAG
* * ** *
48076 AGAAACAATTCTCACATAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTTGAAAATGACAAA
255 AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-AAAAA
*
48141 -TATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGG
319 CTATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGG
* *
48205 ATCTTCTTGAATAC--T------------TTAT---GGAA----T
383 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
48229 AAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAACCAGGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
* * * *
48294 TTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAATGACAATCTATTTAGAACAATTGATGCAAT
66 TTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAA-CTATTTAGACCAA-TGATGCGAT
* * * * * *
48358 TTCCCGAACATGGAAGGTTC-AAGTAATTGCACGAAGGAATGGATCGTCTTCG-ATACATTACGG
128 TTCCCGAGCATGGAATGTTCGAA-AAATTGCTCGAAGGAATGGATCGTCTT-GAATACTTTAAGG
* * * * **
48421 AACCGAAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTTAGAAGTTCGGCCGAGAACCAAGAG
191 AA-CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAG
* * * * * * *
48486 AGAAACTATTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAA
255 AGAAACAATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAA
* *** * * * *
48550 CTATTTAGACCAAATGATGTGATTTCTTGAGCGTGGAATGTTCAAAAAATTGTTTGAAGGAATGG
319 CTATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGG
** * * * *
48615 ATTTTCTTGAATAATTTATGGAACCGAAGTTATAAAAAAACTCGT
383 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * *
48660 AAAAGTTT-TACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-CTAAAT
1 AAAAGTTTGT-CAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAAT
48721 CAAATTTAAT
Statistics
Matches: 5211, Mismatches: 915, Indels: 495
0.79 0.14 0.07
Matches are distributed among these distances:
404 6 0.00
405 158 0.03
406 51 0.01
407 71 0.01
408 254 0.05
409 388 0.07
410 716 0.14
411 116 0.02
412 15 0.00
413 238 0.05
414 29 0.01
415 8 0.00
416 5 0.00
417 1 0.00
418 3 0.00
419 2 0.00
420 1 0.00
421 8 0.00
422 15 0.00
423 12 0.00
424 75 0.01
425 119 0.02
426 388 0.07
427 295 0.06
428 784 0.15
429 381 0.07
430 411 0.08
431 552 0.11
432 73 0.01
433 36 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (427 bp):
AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAATGATGCGATTTC
CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACGA
AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGGCCGAGAACCAAGAGAGAAAC
AATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAACTATTTA
GACCAATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTT
GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
Found at i:43645 original size:196 final size:191
Alignment explanation
Indices: 43309--44260 Score: 562
Period size: 196 Copynumber: 4.7 Consensus size: 191
43299 ACACAATGAC
* *
43309 AACTATTTAGACCAAATGATATGATTTCCCAAGCATGAAATGTTTAGAAAATTGCTCGAAGGAAT
1 AACTATTTAGACCAAATGATACGATTTCCCAAGCATGAAATGTTCAGAAAATTGCTCGAAGGAAT
*
43374 GGATCGTCTTGAATACTTTAAGGAACCAAATTTATAAAAGAACTCGAAAAAGTTTGTCAACTTCG
66 GGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAACTTCG
* * * **
43439 AAAGTTCGGCCCAAAGCCAAGAGAGAAACAATTCTCACCTAAATTAGTTTTTAATTCAAAGGCCA
131 AAAGTTCGG-CC---G-CAAAAGAGAAACAATTCCCACCTAAATAAGTTTTTAATTCAAAAACCA
43504 A
191 A
* * * * *
43505 AACTATTTAGACCAAATGATGCGATTTCTCGAGGATTG-GATGTTCAGAAAATTGCTCGAAGGAA
1 AACTATTTAGACCAAATGATACGATTTCCCAAGCA-TGAAATGTTCAGAAAATTGCTCGAAGGAA
* * * * * * *
43569 TGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATGAAAGAACTCGTAAAAGTTTTTCTAGTTT
65 TGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAACTTC
*
43634 GTAAA-TTCGGCCGCAAAAGCGAAACAATTCCCACCTAAATAAGTTTTTAATTGAAAAACCAAAA
130 G-AAAGTTCGGCCGCAAAAGAGAAACAATTCCCACCTAAATAAGTTTTTAATT-------C-AAA
*
43698 GTATTTACAAAATGA
186 --A---AC--CA--A
* ** * *
43713 CAACTATTTAGACCTAATGATGTGATTTCCCAAGTATGAACTG-T-ATGAAAATTTGCTCGAAGG
1 -AACTATTTAGACCAAATGATACGATTTCCCAAGCATGAAATGTTCA-GAAAA-TTGCTCGAAGG
* * * * * * *
43776 AATGAATCATCTTAAATACTCTAAGGAA-CAAATGTTTTAAAAGAACTCGTAAAAGTTTGTCAAG
63 AATGGATCGTCTTGAATACTTTAAGGAACCAAA-GTTATAAAAGAACTCGAAAAAGTTTGTCAAC
* * * * * *
43840 TTCGAAAGTTCGATCGAGAACTAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAA
127 TTCGAAAGTTCG-GC-CG--C-AAAAGAGAAACAATTCCCACCTAAATAA-GTTTTTAATTCAAA
* *
43904 CACCTGA
186 AACC-AA
** * * *
43911 AGTTGTTTACAAAATGA-CAATCTATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGTT-
1 AACTATTT-----A-GACCAA---A--T-G----A--TA--CGATTTCCCAAGCATGAAATGTTC
* * * * *
43974 TGAAAATTGCTCGAAGGAATGGACCGTGTTGAATACTTT-AGTGAACAAAATTTATAAAAGAACT
46 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG-GAACCAAAGTTATAAAAGAACT
* * * * * * * * * * *
44038 TGTAAAA-TTTGTCAAGTT-TAATGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAG
110 CGAAAAAGTTTGTCAACTTCGAAAGTTCGGCCG-CAA--AAG--AGAAACAATTCCCACCTAAAT
* *
44101 AATTTTTTAATTCAAAGACCAA
170 AAGTTTTTAATTCAAAAACCAA
* * * * * * *
44123 AAGTTTTTTAGACCGAATGATACGATTTTCCAAGCATGTATTGTTC-GAAAAACTGCTCGAAGGA
1 AA-CTATTTAGACCAAATGATACGATTTCCCAAGCATGAAATGTTCAG-AAAATTGCTCGAAGGA
* * *
44187 ATGGATCGTCTTGAATACTTTAAGGAA-CAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTT
64 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAACTT
*
44251 CGGAAGTTCG
129 CGAAAGTTCG
44261 ACAGAGAACC
Statistics
Matches: 595, Mismatches: 94, Indels: 134
0.72 0.11 0.16
Matches are distributed among these distances:
191 35 0.06
192 1 0.00
194 41 0.07
195 50 0.08
196 127 0.21
197 10 0.02
198 3 0.01
199 3 0.01
201 2 0.00
202 4 0.01
203 3 0.01
204 1 0.00
205 2 0.00
206 4 0.01
207 5 0.01
208 20 0.03
209 103 0.17
210 2 0.00
211 4 0.01
212 9 0.02
213 45 0.08
214 41 0.07
215 53 0.09
216 26 0.04
217 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.30
Consensus pattern (191 bp):
AACTATTTAGACCAAATGATACGATTTCCCAAGCATGAAATGTTCAGAAAATTGCTCGAAGGAAT
GGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAACTTCG
AAAGTTCGGCCGCAAAAGAGAAACAATTCCCACCTAAATAAGTTTTTAATTCAAAAACCAA
Found at i:44022 original size:215 final size:213
Alignment explanation
Indices: 43505--48222 Score: 3370
Period size: 215 Copynumber: 22.4 Consensus size: 213
43495 CAAAGGCCAA
* * * * *
43505 AACTATTTAGACCAAATGATGCGATTTCTCGAGGATTGG-ATGTTCAGAAAATTGCTCGAAGGAA
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCA-TGGAATGTTC-GAAAATTGCTCGAAGGAA
* * *
43569 TGGATCGTCTTGAATACTTTAAG-GAATCAAAGTTATGAAAGAACTCGTAAAAGTTTTTCTAGTT
64 TGGATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT
* * * * * * * *
43633 TGTAAA-TTCGGCC--G---CAAAAGCGAAACAATTCCCACCTAAATAAGTTTTTAATTGAAAAA
127 CG-AAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
*
43692 CCAAAAG-TATTTACAAAATGAC
191 CCAAAAGTTGTTTACAAAATGAC
* * *
43714 AACTATTTAGACCTAA-TGATGTGATTTCCCAAGTAT-GAACTGTAT-GAAAATTTGCTCGAAGG
1 AACTATTTAGAAC-AATTGATGCGATTTCCCAAGCATGGAA-TGT-TCGAAAA-TTGCTCGAAGG
* * * * *
43776 AATGAATCATCTTAAATACTCTAAG-GAACAAATGTTTTAAAAGAACTCGTAAAAGTTTGTCAAG
62 AATGGATCGTCTTGAATACT-TTAGTGAACAAA-GTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * *
43840 TTCGAAAGTTCGATCGAGAACTAAGAGAGAAACAATTCTCACATAAATAACATTTTT-ATTCAAA
125 TTCGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA-GTTTTTAATTCAAA
* **
43904 CACCTGAAGTTGTTTACAAAATGAC
189 GACCAAAAGTTGTTTACAAAATGAC
* * *
43929 AATCTATTTAGAACAATTTATGCGATTTCCCAAGTATGGAATGTTTGAAAATTGCTCGAAGGAAT
1 AA-CTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAAT
* * * * *
43994 GGACCGTGTTGAATACTTTAGTGAACAAAATTTATAAAAGAACTTGTAAAA-TTTGTCAAGTT-T
65 GGATCGTCTTGAATACTTTAGTGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG
* * * * *
44057 AATGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAATTCAAAGACCA
129 AAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
*
44122 AAAGTT-TTT----TA-GAC
194 AAAGTTGTTTACAAAATGAC
* * * * *
44136 --C------G---AA-TGATACGATTTTCCAAGCATGTATTGTTCGAAAAACTGCTCGAAGGAAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAAT
*
44189 GGATCGTCTTGAATACTTTAAG-GAACAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTTCG
65 GGATCGTCTTGAATACTTT-AGTGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG
* * * *
44253 GAAGTTCGACAGAGAACCAAGAGAGAAACAATTCTCAGATAAATAACATTTTT-ATTCAAAGACC
129 AAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA-GTTTTTAATTCAAAGACC
*
44317 AAAAGTTGTTTACAAAATAAC
193 AAAAGTTGTTTACAAAATGAC
* * * * * *
44338 AATCTATTTAGAACAATTTATGCGATTTCCTAAGTATGGAATGTTTGAAAATTGCTCAAAAGAAT
1 AA-CTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAAT
* * * *
44403 GGATCGTGTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTT-T
65 GGATCGTCTTGAATACTTTAGTGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG
* * * * *
44467 AACGTTCAACCGAGAACCAAGAAAGAAACAATTCTCACATAAAGAA-TTTGTTAATTCAAAGAAC
129 AAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT-TTAATTCAAAGACC
* *
44531 AAAACTTGTTTACAAAATCAC
193 AAAAGTTGTTTACAAAATGAC
* * *
44552 AACTATTTA-AACGAAATGATGCGATTT-CCAAGCATGTAATGTTCGAAAAACTGCTCGAAGGAA
1 AACTATTTAGAAC-AATTGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAA
* *
44615 TGGATCATCTTGAATACTTTAAG-GAACAAAAGTTTTAAAAGAACTCGTAAAAGTTTGTCAAGTT
64 TGGATCGTCTTGAATACTTT-AGTGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT
* *** * * *
44679 CGGAAGTTCGGTTGAGAACCAAGAGAGAAATAATTCTCAGATAAATAACATTTTT-ATTCAAAGA
127 CGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA-GTTTTTAATTCAAAGA
44743 CCAAAAGTTGTTTACAAAATGAC
191 CCAAAAGTTGTTTACAAAATGAC
* * * * * *
44766 AATCTATTTGGAACAATTTATGTGATATCCCAAGCATAGAATGTTCAAAAATTGCTCGAAGGAAT
1 AA-CTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAAT
* * * * *
44831 GGATCGTGTTGAATACTTTA-TGGAACTGAAGTTAAAAAAGAACTCGTAAAAGTTTATCAACTTC
65 GGATCGTCTTGAATACTTTAGT-GAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
* * * * * * *
44895 GAAAGTTTGGCTGAGAACCAAGAGAGGAACTATTATCACATAAATATGTTTTTAATTCAAAGACC
128 GAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC
* *
44960 AAAAGTTGTTTATAAAATGAG
193 AAAAGTTGTTTACAAAATGAC
* * ** *
44981 AACTATTTAG-ACCATGTGATGCAATTTCCTGAGCATGGAATTTTCGAAAAATTG-TACGAAGGA
1 AACTATTTAGAACAAT-TGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCT-CGAAGGA
** * * * *
45044 ATGGATCGTCTCAAATACTTTAATGAACTAACGTTATAGAAGAATTCGTAAAAGTTTGTCAAGTT
63 ATGGATCGTCTTGAATACTTTAGTGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT
* * * *
45109 C-ATAAATTCGACTGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGA
127 CGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
* * *
45173 CCCAAAGTTGTTTACAAGATGGC
191 CCAAAAGTTGTTTACAAAATGAC
* * * ** *
45196 AAATATTTAGACCAAATGATTTGATTTCCCAAGCATGGAATGTTCGAAAAATTTCTCGAAGGAAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAAT
* *
45261 GGATCGTCTTGAATACTTTA-TGGAACAAAAGTT-T----G---TC----AAGTTCG-GAAGTTC
65 GGATCGTCTTGAATACTTTAGT-GAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
** * * * * * ** * *
45312 GACCG--AGAAC-A-AA--GA-A-A-ATACAATTCTCGCATAAATAACATTTTAATTTAAAGAAC
128 GAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC
* *
45368 ATAAGTTTTTTTTACAAAATGAC
193 AAAAG--TTGTTTACAAAATGAC
*
45391 AATCTATTTAGAACAATTGATGCGATTTCCCGAA-CATGGAATGTTCGAAAAATTGCACGAAGGA
1 AA-CTATTTAGAACAATTGATGCGATTTCCC-AAGCATGGAATGTTCG-AAAATTGCTCGAAGGA
* * * * *
45455 ATAGATCGTCTTGAATACTTTAAG-GAACCGAAGTTAAAAAAGAACTCATAAAA-TTTGTCAACT
63 ATGGATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGT
* * * * *
45518 TCGGAAGTT-TAGCCGAGAACCAAGAGAGAAACTATTATCACCA-AAATAAGTTTTTAGTTCAAA
126 TCGAAAGTTCGA-CCGAGAACCAAGAGAGAAACAATTCTCA-CATAAATAAGTTTTTAATTCAAA
* * *
45581 GACCGAATGTTGTTTAAAAAATGAC
189 GACCAAAAGTTGTTTACAAAATGAC
* * ** * * *
45606 AACTATTTAGACCAATTGATGCAATTTCCTGAGCATGGAATGTTCAGAAAATTACTTG-A-CAAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAAT
* * * * *
45669 GGATCGTCTTGAATAATTTA-TGGAACCGATGTTATTAAAGAACTCAG-AAAAGTTTGTCAACTT
65 GGATCGTCTTGAATACTTTAGT-GAA-CAAAGTTATAAAAGAACTC-GTAAAAGTTTGTCAAGTT
* **** * ** * *
45732 CGGAAGTTCGAATTTGAACAAAGAGAGAAATTATTCTCACCTAAATTAGTTTTTAATTCAAAGA-
127 CGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGAC
45796 CAAAAGTTGTTTACAAAATGAC
192 CAAAAGTTGTTTACAAAATGAC
* * * * * * *
45818 AACTATTTAGACCAAATGATGCGATTTCTCTAGTATGGAATGTTCGAAAATTGATTGAAGGAATG
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATG
* * *
45883 GATCGTCTTAAATACTTTAAG-GAACCAAAGTTATAAAAGAACTTGTAAAATTTTGTCAAGTTCG
66 GATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG
* * * * * * *
45947 AAAGTTCGATCGAGAACCAAGAAAGAAACAATTATCACACAAATAACTTTTAAATTTAAAGACCA
129 AAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
*
46012 AAACTTGTTTACAAAATGAC
194 AAAGTTGTTTACAAAATGAC
* * * *
46032 ATA-TATTTAGACCGAA-TGATTCGATTTCCTAAGCATGGAATGTTCAGAAAATGGCTCGAAGGA
1 A-ACTATTTAGAAC-AATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGA
* * * * * *
46095 ATGGATCGTCTTGAATACTTTA-TG------G-AATAAAAG--TTTGT-CAAGTTCG-AAAGTTC
63 ATGGATCGTCTTGAATACTTTAGTGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
** *** * * * * * ** * * *
46148 GACCG-AAAACCAAG-A--AAGA-A-ACA-ATTCTCACATA-AATA-ACTTTTTAATTTAAAGA-
128 GAAAGTTCGACCGAGAACCAAGAGAGAAACAAT-TCTCACATAA-ATAAGTTTTTAATTCAA-AG
* ** * * *** *
46203 ACAAAAGTTTTTTACA-AAATGAAA
190 ACCAAAAGTTGTT-TACAAAATGAC
* * * *
46227 ATCTATTTAGAACAATTGATGCAATTTCCCGAA-CATGGAAGGTTCGAGTAATTGCAT-GAAGGA
1 AACTATTTAGAACAATTGATGCGATTTCCC-AAGCATGGAATGTTCGA-AAATTGC-TCGAAGGA
* * * * * *
46290 ATGGATCGTCTTCG-ATACTTTA-TGGCACTGAAGTTAAAAAATAACTCATAAAAGTTTGTCAAC
63 ATGGATCGTCTT-GAATACTTTAGT-GAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG
* * *
46353 TTC-AGAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAATTCAA
125 TTCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATT-CTCACATAAATAAGTTTTTAATTCAA
* * * *
46416 AGAACAAATGTTCTTTATAAAATGAC
188 AGACCAAAAGTTGTTTACAAAATGAC
* * *** * *
46442 AACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAAT
* * * * * *
46507 GGATTGTCTTGAATAATTTA-TGGATCTAAAGTTATAAACGAACTTGTAAAAGTTTGTCAACTTC
65 GGATCGTCTTGAATACTTTAGT-GAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
* * * ** *
46571 GGATGTTCGACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
128 GAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC
* *
46636 AAAATTTGTTTTCAAAATGAC
193 AAAAGTTGTTTACAAAATGAC
* * * * * * * *
46657 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGAAATGTTCAAAAAATTGCTTGAAGGAGT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAAT
* * * * *
46722 GTATCGTCTTAAATACTTTAATGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCGAA-CTC
65 GGATCGTCTTGAATACTTTAGTGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTC-AAGTTC
* * * * *
46786 GGAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGGCC
128 GAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC
*
46851 AAAAGTTATTTACAAAATGAC
193 AAAAGTTGTTTACAAAATGAC
* *
46872 AATCTATTTAGAACAA-T--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGCGAAGGAA
1 AA-CTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAA
* * * * *
46932 TGGATCATCTTGAATACTTTAAG-GAACCCAAGTTAAAAAAGAACTCGTAAATGTTTTTCAAGTT
64 TGGATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT
* * * ** * * * * *
46996 TGTAAGTTCTACCGAGAACTTAGAGAGGAACTATTATCTCCTAAATAAGTTTTTAATTCAAAGAC
127 CGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGAC
* * *
47061 CAAAAGTTGTTTATAACATTAC
192 CAAAAGTTGTTTACAAAATGAC
* * ** * * * *
47083 AACTATTT-GAACGAAATAATATGATTT-CCAGAGCATGGATTGTTCAGAAAATGGTTCGGAGGA
1 AACTATTTAGAAC-AATTGATGCGATTTCCCA-AGCATGGAATGTTC-GAAAATTGCTCGAAGGA
* * * ** *
47146 ATGAATCATCTTGAATACTTTAAG-GAATAAAACTATAAAAGAACTCGTAAAAGTTTG---A--C
63 ATGGATCGTCTTGAATACTTT-AGTGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT
* * *** * * **
47205 CG--AG---AACCTAG-A--AAGA-A-ACAATTCTTACAT-AAATAAGT-TTTTATTTCAA---A
127 CGAAAGTTCGACCGAGAACCAAGAGAGA-AACAATT-C-TCACATAAATAAGTT-TTT-AATTCA
* * * * ** *
47255 GA-CCAAAAGTTGTT-TACAAAACGACAAT--C
187 AAGACCAAA--AGTTGT---TTAC-AAAATGAC
* * ** * * * * *
47284 TA-TTTAG--AACAATTGTTGCGATTTCCCAAGAATTGAATGTTTGAAAAATTGCTCGAAGGTAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAAT
* * * * * * *
47346 AGATCGTCTTGAATAATTTAAG-GAACCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTC
65 GGATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
* * * ** * *
47410 -AGAAGATCAGTCC-AGAACCTAGAGAGAAATTATTATCACCTAAATAAGTTTTTAATTCAAAGA
128 GA-AAGTTC-GACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
* *
47473 CCAAAAGTTGTTTATAAAATTAC
191 CCAAAAGTTGTTTACAAAATGAC
* *** * *** * * * *
47496 AACTATTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGCTCGAAGTAAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAAT
* * * * * * * *
47561 GTATCATCTTAAATACTTTAAG-GAATCGAAGTTATAAAATAAGTCGTAAAAGTTTGTTAACTTC
65 GGATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC
* * * * * *
47625 GGAAGTTCGGCCTAGAACCAAGAGAGGAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
128 GAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC
* *
47690 AAAAGTTGTTTACAAAATTAA
193 AAAAGTTGTTTACAAAATGAC
* * * * ** ***
47711 AACTA-TTAGACCGAA-TGATGCAATTTCTCGAGCATCAAATGTTCGAAAAATTG-GAAAAGGAA
1 AACTATTTAGAAC-AATTGATGCGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAA
* * * * *
47773 TGGATCGCCTTGAATACTTTAAG-GAATCGAAGTTATGAAAGAACTCGTATAAGTTTTTC-AGAT
64 TGGATCGTCTTGAATACTTT-AGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-T
* * * * * *
47836 TC-ATAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGAAAA
126 TCGA-AAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* *
47900 ACCAAAAGTAGTTTACAAAATAAC
190 ACCAAAAGTTGTTTACAAAATGAC
* * * * *
47924 AACTATTTAGACCTAA-TGATGTGATTTCCCAAGCATGGACTATACAGAAAATTTG-TCGAAGGA
1 AACTATTTAGAAC-AATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAA-TTGCTCGAAGGA
* * * * *
47987 ATGTATCGTCTTGAATACTTTAATGAATGAAAGTTATAAAAGCACTTGTAAAAGTTTGTCAAGTT
63 ATGGATCGTCTTGAATACTTTAGTGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTT
* * * * * * *
48052 -TAATGTTCGGCTGAGATCCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAATTCAAAGAC
127 CGAAAGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGAC
**
48116 CAAAAGTTGTTTTGAAAATGAC
192 CAAAAGTTGTTTACAAAATGAC
* * * *
48138 AAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAAT
1 AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAAT
*
48203 GGATCTTCTTGAATACTTTA
65 GGATCGTCTTGAATACTTTA
48223 TGGAATAAAA
Statistics
Matches: 3568, Mismatches: 708, Indels: 461
0.75 0.15 0.10
Matches are distributed among these distances:
193 34 0.01
194 49 0.01
195 159 0.04
196 154 0.04
197 14 0.00
198 65 0.02
199 33 0.01
200 16 0.00
201 18 0.01
202 22 0.01
203 17 0.00
204 18 0.01
205 1 0.00
206 11 0.00
207 19 0.01
208 30 0.01
209 111 0.03
210 24 0.01
211 174 0.05
212 155 0.04
213 474 0.13
214 623 0.17
215 1230 0.34
216 83 0.02
217 32 0.01
218 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (213 bp):
AACTATTTAGAACAATTGATGCGATTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATG
GATCGTCTTGAATACTTTAGTGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAA
AGTTCGACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAA
AGTTGTTTACAAAATGAC
Found at i:44319 original size:196 final size:195
Alignment explanation
Indices: 43976--44756 Score: 614
Period size: 214 Copynumber: 3.8 Consensus size: 195
43966 GGAATGTTTG
* * *
43976 AAAATTGCTCGAAGGAATGGACCGTGTTGAATACTTTAGTGAACAAAATTTATAAAAGAACTTGT
1 AAAACTGCTCGAAGGAATGGACCGTCTTGAATACTTTAGTGAACAAAATTTATAAAAGAACTCGT
* * *
44041 AAAATTTGTCAAGTTTAATGTTCGACTGAGAACCAAGAAAGAAACAATTCTCACATAAAGAATTT
66 AAAATTTGTCAAGTTGAATGTTCGACAGAGAACCAAGAAAGAAACAATTCTCACATAAAGAAATT
*
44106 TTTAATTCAAAGACCAAAAGTTTTTTAGACCGAATGATACGATTTTCCAAGCATGTATTGTTCGA
131 TTTAATTCAAAGACCAAAAGTTGTTTAGACCGAATGATACGATTTTCCAAGCATGTATTGTTCGA
* *
44171 AAAACTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG-GAACAAAGTTT-TAAAAGAACTCG
1 AAAACTGCTCGAAGGAATGGACCGTCTTGAATACTTT-AGTGAACAAAATTTATAAAAGAACTCG
* * *
44234 TAAAAGTTTGTCAAGTTCGGAA-GTTCGACAGAGAACCAAGAGAGAAACAATTCTCAGATAAATA
65 TAAAA-TTTGTCAAGTT--GAATGTTCGACAGAGAACCAAGAAAGAAACAATTCTCACATAAAGA
* * *
44298 ACATTTTT-ATTCAAAGACCAAAAGTTGTTTACAAAATAACAATCTATTTAGAACAATTTATGCG
127 A-ATTTTTAATTCAAAGACCAAAAGTTGTTT-----A-GAC---C------G---AA-TGATACG
* * * *
44362 A-TTTCCTAAGTATGGAATGTTTG-
172 ATTTTCC-AAGCATGTATTGTTCGA
* * * * * * * *
44385 AAAATTGCTCAAAAGAATGGATCGTGTTGAATACTTTAATGAACAAAAGTTATAAAAGAACTTGT
1 AAAACTGCTCGAAGGAATGGACCGTCTTGAATACTTTAGTGAACAAAATTTATAAAAGAACTCGT
* * * *
44450 AAAAGTTTGTCAAGTTTAACGTTCAACCGAGAACCAAGAAAGAAACAATTCTCACATAAAG-AAT
66 AAAA-TTTGTCAAGTTGAATGTTCGACAGAGAACCAAGAAAGAAACAATTCTCACATAAAGAAAT
* * * *
44514 TTGTTAATTCAAAGAACAAAACTTGTTTACAAAATCACAACTATTTAAACGAAATGATGCGA-TT
130 TT-TTAATTCAAAGACCAAAAGTTG-TT------T-A-GAC--------CG-AATGATACGATTT
*
44578 TCCAAGCATGTAATGTTCGA
176 TCCAAGCATGTATTGTTCGA
* *
44598 AAAACTGCTCGAAGGAATGGATCATCTTGAATACTTTAAG-GAACAAAAGTTT-TAAAAGAACTC
1 AAAACTGCTCGAAGGAATGGACCGTCTTGAATACTTT-AGTGAACAAAA-TTTATAAAAGAACTC
*** * * * *
44661 GTAAAAGTTTGTCAAGTTCGGAA-GTTCGGTTGAGAACCAAGAGAGAAATAATTCTCAGATAAAT
64 GTAAAA-TTTGTCAAGTT--GAATGTTCGACAGAGAACCAAGAAAGAAACAATTCTCACATAAAG
44725 AACATTTTT-ATTCAAAGACCAAAAGTTGTTTA
126 AA-ATTTTTAATTCAAAGACCAAAAGTTGTTTA
44757 CAAAATGACA
Statistics
Matches: 475, Mismatches: 62, Indels: 87
0.76 0.10 0.14
Matches are distributed among these distances:
194 16 0.03
195 55 0.12
196 62 0.13
197 7 0.01
201 1 0.00
202 2 0.00
205 1 0.00
206 1 0.00
207 1 0.00
211 1 0.00
212 17 0.04
213 88 0.19
214 157 0.33
215 53 0.11
216 5 0.01
217 4 0.01
221 1 0.00
222 3 0.01
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (195 bp):
AAAACTGCTCGAAGGAATGGACCGTCTTGAATACTTTAGTGAACAAAATTTATAAAAGAACTCGT
AAAATTTGTCAAGTTGAATGTTCGACAGAGAACCAAGAAAGAAACAATTCTCACATAAAGAAATT
TTTAATTCAAAGACCAAAAGTTGTTTAGACCGAATGATACGATTTTCCAAGCATGTATTGTTCGA
Found at i:46479 original size:410 final size:409
Alignment explanation
Indices: 45716--48637 Score: 2181
Period size: 410 Copynumber: 7.0 Consensus size: 409
45706 AAGAACTCAG
* * **** * * *
45716 AAAAGTTTGTCAACTTCGGAAGTTCGAATTTGAACAAAGAGAGAAATTATTCTCACCTAAATTAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* *
45781 TTTTTAATTCAAAG-ACAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT
66 TTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAACTATTTAGAACAATTGATGCGATTT
* * * * *
45845 CTCTAGTATGGAATGTTCG-AAAATTG-ATTGAAGGAATGGATCGTCTTAAATACTTTAAGGAAC
131 CCCGAGCATGGAATGTTCGAAAAATTGCA-TGAAGGAATGGATCGTCTT-GATACTTTATGGAAC
** * * * ** *
45908 CAAAGTTATAAAAGAACTTGTAAAATTTTGTCAAGTTC-GAAAGTTCGATCGAGAACCAAGAAAG
194 TGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAG-AAGTTCGGCCGAGAACCAAGAGAG
* * * * * *
45972 AAACAATTATCACAC-AAATAACTTTTAAATTTAAAGACCAAAACTTGTTTACAAAATGACATA-
258 AAACTATTCTCAC-CTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-AC
* * ** *
46035 TATTTAGACCGAATGATTCGATTTCCTAAGCATGGAATGTTCAGAAAATGGCTCGAAGGAATGGA
321 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
46100 TCGTCTTGAATACTTTATGGAA-T
386 TCGTCTTGAATACTTTATGGAATT
* * * * *
46123 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAAAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * *
46188 TTTTTAATTTAAAGAACAAAAGTTTTTTACAAAATGAAAATCTATTTAGAACAATTGATGCAATT
66 TTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAATTGATGCGATT
* * ** *
46253 TCCCGAACATGGAAGGTTCGAGTAATTGCATGAAGGAATGGATCGTCTTCGATACTTTATGGCAC
130 TCCCGAGCATGGAATGTTCGAAAAATTGCATGAAGGAATGGATCGTCTT-GATACTTTATGGAAC
* * *
46318 TGAAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGAGA
194 TGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGAGA
* * * *
46383 AACTATTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAACTA
259 AACTATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
** * * *
46447 TTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATT
323 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
*
46512 GTCTTGAATAATTTATGGATCTAAAGTTATAAACGAACTTGT
388 GTCTTG----A---AT--A-CT----TTAT---GGAA--T-T
* * * * *
46554 AAAAGTTTGTCAACTTCGGATGTTCGACCGTGAACCAAGAGAGAAATTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* * * * *
46619 TTTTTAATTCAAAGACCAAAATTTGTTTTCAAAATGACAACTATTTAGACCAAATGATGCGATTT
66 TTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAACTATTTAGAACAATTGATGCGATTT
* * * * * * *
46684 CTCGAGCATGAAATGTTCAAAAAATTGCTTGAAGGAGTGTATCGTCTTAAATACTTTAAT-GAAC
131 CCCGAGCATGGAATGTTCGAAAAATTGCATGAAGGAATGGATCGTCTT-GATACTTT-ATGGAAC
* * *
46748 TGAAGTTATAAAAGAACTCGTAAAAGTTTGTCGAAC-TCGGAAGTTCGACCGAGAACCAAGAAAG
194 TGAAGTTATAAAAGAACTCGTAAAAGTTTGTC-AACTTCAGAAGTTCGGCCGAGAACCAAGAGAG
* * * * * *
46812 AAACAATTCTCACATAAATAACTTTTTAATTTAAAGGCCAAAAGTTATTTACAAAATGACAATCT
258 AAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CT
* * *
46877 ATTTAGAAC-AAT--T--GATTTCCCGAGCATGGAATGTTCGGAAAATTGCGCGAAGGAATGGAT
322 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* *
46937 CATCTTGAATACTTTAAGGAACCCAAGTT
387 CGTCTTGAATACTTTATGG-----AA-TT
* * * ** *
46966 AAAAAAGAACTCGTAAATGTTTTTCAAGTTTGTAAGTTCTACCGAGAACTTAGAGAGGAACTATT
1 --AAAAG---T--T---TG----TCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATT
* * * * * *
47031 ATCTCCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAACATTACAACTATTT-GAAC
52 CTCACCTAAATAAGTTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAACTATTTAGAAC
* * ** * * ** * * *
47095 GAAATAATATGATTTCCAGAGCATGGATTGTTC-AGAAAA-TGGTTCGGAGGAATGAATCATCTT
117 -AATTGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCAT-GAAGGAATGGATCGTCTT
* * **
47158 GAATACTTTAAGGAA-TAAAACTATAAAAGAACTCGTAAAA----GT----TT--G-A------C
179 G-ATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTCGGC
* * * * * *
47205 CGAGAACCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTT
243 CGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
47270 ACAAAACGACAATCTATTTAGAACAATTGTTGCGATTTCCCAAGAATTGAATGTT-TGAAAAATT
308 ACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATT
* * * *
47334 GCTCGAAGGTATAGATCGTCTTGAATAATTTAAGGAACCGAAGTT
371 GCTCGAAGGAATGGATCGTCTTGAATACTTT-ATG----GAA-TT
* * * * * * *
47379 AAAAAAGAACTCGTAAAGGTTTTTG-AAGTTCAGAAGATCAGTCCAGAACCTAGAGAGAAATTAT
1 --AAAAG--TTTGTCAA-G--TTCGAAAGTTC----GA-C---CGAGAACCAAGAGAGAAACTAT
* * * * *
47443 TATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATTACAACTATTTAGAC
51 TCTCACCTAAATAAGTTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAACTATTTAGAA
*** * * * * * * * * *
47508 CAACCAAAGCGATTTCCTGGGCTTGAAATGTTCAAAAAATTGC-TCGAAGTAATGTATCATCTTA
116 CAATTGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCAT-GAAGGAATGGATCGTCTT-
* * * * * *
47572 AATACTTTAAGGAA-TCGAAGTTATAAAATAAGTCGTAAAAGTTTGTTAACTTCGGAAGTTCGGC
179 GATACTTTATGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTCGGC
* *
47636 CTAGAACCAAGAGAGGAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
243 CGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * **
47701 ACAAAATTAAAACTA-TTAGACCGAATGATGCAATTTCTCGAGCATCAAATGTTC-GAAAAATTG
308 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTG
*** * *
47764 -GAAAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTT
372 CTCGAAGGAATGGATCGTCTTGAATACTTT-----ATGGAA-TT
* * * * * * *
47807 ATGAAAGAACTCGTATAAGTTTTTCAGATTCATAAGTTCGGCCAAGAACCAAAAGAGAAACAATT
1 A--AAAG--TTTGT-CAAG---TTC-G----A-AAGTTCGACCGAGAACCAAGAGAGAAACTATT
* * * *
47872 CTCACCTAAATAAGTTTTTAATTGAAA-AACCAAAAGTAGTTTACAAAATAACAACTATTTAGAC
52 CTCACCTAAATAAGTTTTTAATTCAAAGAA-CAAAAGTTGTTTACAAAATGACAACTATTTAGAA
* * * * * * *
47936 CTAA-TGATGTGATTTCCCAAGCATGGACTATACAGAAAATTTG--TCGAAGGAATGTATCGTCT
116 C-AATTGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCAT-GAAGGAATGGATCGTCT
* * * * *
47998 TGAATACTTTAAT-GAA-TGAAAGTTATAAAAGCACTTGTAAAAGTTTGTCAAGTTTA-ATGTTC
178 TG-ATACTTT-ATGGAACTG-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTC
* * * * * *
48060 GGCTGAGATCCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAATTCAAAGACCAAAAGTTG
240 GGCCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
** * * *
48125 TTTTGAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCAGAAAAT
305 TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAT
*
48190 TGCTCGAAGGAATGGATCTTCTTGAATACTTTATGGAA-T
370 TGCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAATT
* * * * * *
48229 AAAAGTTTGTCAAGTTCGAAAGTTCGACCAAGAACCAGGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
* *
48294 TTTTTAATTTAAAGAACAAAAGCTT-TTTACAAAATGACAATCTATTTAGAACAATTGATGCAAT
66 TTTTTAATTCAAAGAACAAAAG-TTGTTTACAAAATGACAA-CTATTTAGAACAATTGATGCGAT
* * * * * *
48358 TTCCCGAACATGGAAGGTTC-AAGTAATTGCACGAAGGAATGGATCGTCTTCGATACATTACGGA
129 TTCCCGAGCATGGAATGTTCGAA-AAATTGCATGAAGGAATGGATCGTCTT-GATACTTTATGGA
* * * * *
48422 ACCGAAGTTAAAAAATAACTCATAAAAGTTTGTCAACTTTAGAAGTTCGGCCGAGAACCAAGAGA
192 ACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGA
* * * *
48487 GAAACTATTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTATAAAATGACAAC
257 GAAACTATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC
* ** * * * *
48551 TATTTAGACCAAATGATGTGATTTCTTGAGCGTGGAATGTTCAAAAAATTGTTTGAAGGAATGGA
321 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
** *
48616 TTTTCTTGAATAATTTATGGAA
386 TCGTCTTGAATACTTTATGGAA
48638 CCGAAGTTAT
Statistics
Matches: 2015, Mismatches: 361, Indels: 275
0.76 0.14 0.10
Matches are distributed among these distances:
403 3 0.00
404 1 0.00
405 6 0.00
406 4 0.00
407 67 0.03
408 184 0.09
409 134 0.07
410 352 0.17
411 4 0.00
412 6 0.00
413 199 0.10
414 39 0.02
415 1 0.00
416 2 0.00
417 8 0.00
418 6 0.00
419 4 0.00
420 6 0.00
421 2 0.00
422 7 0.00
424 10 0.00
425 32 0.02
426 185 0.09
427 80 0.04
428 230 0.11
429 79 0.04
430 182 0.09
431 173 0.09
432 3 0.00
436 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (409 bp):
AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAGAAACTATTCTCACCTAAATAAG
TTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAACTATTTAGAACAATTGATGCGATTT
CCCGAGCATGGAATGTTCGAAAAATTGCATGAAGGAATGGATCGTCTTGATACTTTATGGAACTG
AAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAGAAGTTCGGCCGAGAACCAAGAGAGAAA
CTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTT
AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTC
TTGAATACTTTATGGAATT
Found at i:48120 original size:214 final size:212
Alignment explanation
Indices: 47207--48720 Score: 1216
Period size: 215 Copynumber: 7.2 Consensus size: 212
47197 AGTTTGACCG
* * * *
47207 AGAACCTAGAAAGAAACAATTCTTACATAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTAC
1 AGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
** * * * * *
47272 AAAACGACAATCTATTTAGAACAATTGTTGCGATTTCCCAAGAATTGAATGTT-TGAAAAATTGC
66 AAAATAACAA-CTATTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGC
* * * * * *
47336 TCGAAGGTATAGATCGTCTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAGGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * *
47401 TTGAAGTTCAGAAGATCAGTCC
193 GTCAAGTTC-TAAGTTC-GGCT
* * ** * *
47423 AGAACCTAGAGAGAAATTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAT
1 AGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* ** * *** * *
47488 AAAATTACAACTATTTAGACCAACCAAAGCGATTTCCTGGGCTTGAAATGTTCA-AAAAATTGCT
66 AAAATAACAACTATTTAGACCAA-TGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGCT
* * * * * *
47552 CGAAGTAATGTATCATCTTAAATACTTTAAGGAATCGAAGTTATAAAATAAGTCGTAAAAGTTTG
130 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT-GAAGTTATAAAAGAACTCGTAAAAGTTTG
* * *
47617 TTAACTTCGGAAGTTCGGCCT
194 TCAAGTTC-TAAGTTCGG-CT
* * *
47638 AGAACCAAGAGAGGAACTATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
1 AGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * **
47703 AAAATTAA-AACTA-TTAGACCGAATGATGCAATTTCTCGAGCATCAAATGTTC-GAAAAATTG-
66 AAAA-TAACAACTATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGC
*** * * *
47764 GAAAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATGAAAGAACTCGTATAAGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT-GAAGTTATAAAAGAACTCGTAAAAGTTT
* *
47829 TTC-AGATTCATAAGTTCGGCCA
193 GTCAAG-TTC-TAAGTTCGG-CT
* * *
47851 AGAACCAA-AAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTGAAAAACCAAAAGTAGTTTA
1 AGAACCAAGAA-AGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * *
47915 CAAAATAACAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTATACAGAAAATTTG-
65 CAAAATAACAACTATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGC
* * * *
47979 TCGAAGGAATGTATCGTCTTGAATACTTTAATGAATGAAAGTTATAAAAGCACTTGTAAAAGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATG-AAGTTATAAAAGAACTCGTAAAAGTTT
48044 GTCAAGTT-TAATGTTCGGCT
193 GTCAAGTTCTAA-GTTCGGCT
* * * *
48064 GAGATCCAAGAAAGAAACAATTCTCACATAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTT
1 -AGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
48129 GAAAATGACAAATATTTAGACCAAATGATTCGATTTCCCAAGCATGGAATGTTCAG-AAAATTGC
65 CAAAATAACAACTATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGC
* * * *
48193 TCGAAGGAATGGATCTTCTTGAATACTTTATGGAATAAAAGTT-T----G---TC----AAGTTC
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT-GAAGTTATAAAAGAACTCGTAAAAGTTT
* * *
48246 G-AAAGTTC---G-AC--CA
193 GTCAAGTTCTAAGTTCGGCT
* * * * *
48259 AGAACCAGGAAAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAAAAGCTT-TTTA
1 AGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTA
* * * * **
48323 CAAAATGACAATCTATTTAGAACAATTGATGCAATTTCCCGAA-CATGGAAGGTTCA-AGTAATT
65 CAAAATAACAA-CTATTTAGACCAA-TGATGCGATTTCCC-AAGCATGGAATGTTCAGAAAAATT
* * * * * * *
48386 GCACGAAGGAATGGATCGTCTTCG-ATACATTACGGAACCGAAGTTAAAAAATAACTCATAAAAG
127 GCTCGAAGGAATGGATCGTCTT-GAATACTTTAAGGAA-TGAAGTTATAAAAGAACTCGTAAAAG
* *
48450 TTTGTCAACTT-TAGAAGTTCGGCCG
190 TTTGTCAAGTTCT--AAGTTCGG-CT
* * * * *
48475 AGAACCAAGAGAGAAACTATTAC-CACCTAAATAAGTTTTTAATTCAAAGAACAAATGTTCTTTA
1 AGAACCAAGAAAGAAACAATT-CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *** * *
48539 TAAAATGACAACTATTTAGACCAAATGATGTGATTTCTTGAGCGTGGAATGTTCA-AAAAATTGT
65 CAAAATAACAACTATTTAGACC-AATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGC
* ** * * * *
48603 TTGAAGGAATGGATTTTCTTGAATAATTTATGGAACCGAAGTTATAAAAAAACTCGTAAAAGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGAACTCGTAAAAGTTT
* * *
48668 -TACAAGTTCGGAAGTTCGTCCA
193 GT-CAAGTTC-TAAGTTCG-GCT
*
48690 AGAACCAAGAGAGAAACAATTCTCA-CTAAAT
1 AGAACCAAGAAAGAAACAATTCTCACCTAAAT
48721 CAAATTTAAT
Statistics
Matches: 1047, Mismatches: 193, Indels: 118
0.77 0.14 0.09
Matches are distributed among these distances:
194 67 0.06
195 76 0.07
196 3 0.00
197 1 0.00
198 1 0.00
201 5 0.00
202 6 0.01
203 2 0.00
206 1 0.00
207 6 0.01
208 4 0.00
209 1 0.00
212 6 0.01
213 145 0.14
214 220 0.21
215 368 0.35
216 134 0.13
217 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Consensus pattern (212 bp):
AGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
AAAATAACAACTATTTAGACCAATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAAATTGCTC
GAAGGAATGGATCGTCTTGAATACTTTAAGGAATGAAGTTATAAAAGAACTCGTAAAAGTTTGTC
AAGTTCTAAGTTCGGCT
Found at i:49887 original size:198 final size:198
Alignment explanation
Indices: 49661--50055 Score: 458
Period size: 201 Copynumber: 2.0 Consensus size: 198
49651 GGAACGTGCG
* * * *
49661 GAAAATTTTTGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGATCTC-
1 GAAAATTCTTGAAGGAATGCATCGTCTTGAATAC-TTTAAGGAACCGAAGTAATAAA-AAACTCG
* * * * * * *
49725 AAGAAAGTTTGATAAGTTC-TGTTCGTCCGAGAACCAAGA-A-AAACAGTTCTCCCGTAAATAAG
64 AA-AAAGTTTAACAAGTTCGAGTTCGTCCCAGAACCAAGAGAGAAACAATCCTCACGTAAATAAG
* * * *
49787 TTTTTAATT-AAAGGACCAAAACTTGTTTAGAAAATGAAAAACTATTTAGACCAAATGATGCGAT
128 TTTTTAATTCAAA-GACCAAAACATCTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAAT
49851 TTTTCGA
192 TTTTCGA
* * *
49858 GAAAATTGCTTGAAGGAATGCATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAAACTCGT
1 GAAAATT-CTTGAAGGAATGCATCGTCTTGAATACTTTAAGGAACCGAAGTAATAAAAAACTCGA
* *
49923 AAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAATCAAGAGAGAAACAATCCTCACGTAAATGAG
65 AAAAGTTTAACAAGTTC-G-AGTTCGTCCCAGAACCAAGAGAGAAACAATCCTCACGTAAATAAG
* * ** * *
49988 TTTTTAATTCTAAGATCAAAACATCTTTACAAAATGGCAAACTATTTAGACGAAATGATTCAATT
128 TTTTTAATTCAAAGACCAAAACATCTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAATT
50053 TTT
193 TTT
50056 TGAGCAAGGA
Statistics
Matches: 164, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
196 18 0.11
197 28 0.17
198 25 0.15
199 17 0.10
200 1 0.01
201 73 0.45
202 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (198 bp):
GAAAATTCTTGAAGGAATGCATCGTCTTGAATACTTTAAGGAACCGAAGTAATAAAAAACTCGAA
AAAGTTTAACAAGTTCGAGTTCGTCCCAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAACATCTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTTT
CGA
Found at i:51078 original size:17 final size:17
Alignment explanation
Indices: 51058--51090 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51048 TTTAAGGACT
51058 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
51075 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
51091 TATGTTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Done.