Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011290.1 Kokia drynarioides strain JFW-HI SEQ_126269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5071
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.30

Warning! 424 characters in sequence are not A, C, G, or T


Found at i:1224 original size:21 final size:20

Alignment explanation


    Indices: 1195--1233  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1185 GTCTATTTGC

                     **         
       1195 CCCGAAGGAGTAGAGTATTG
          1 CCCGAAGGAACAGAGTATTG

                               
       1215 CCCGAGAGGAACAGAGTAT
          1 CCCGA-AGGAACAGAGTAT

       1234 CGCGATGGCT


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    5  0.31
  21   11  0.69

ACGTcount: A:0.33, C:0.18, G:0.33, T:0.15


Consensus pattern (20 bp):   
CCCGAAGGAACAGAGTATTG
Done.