Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011293.1 Kokia drynarioides strain JFW-HI SEQ_126273, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:557 original size:45 final size:45

Alignment explanation


    Indices: 490--626  Score: 175
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        480 GCATAGCTCA

                             *            *              
        490 TCAAGCCAAGGATATCAGCCTCAGTTTGACAAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAACCTCAGTTTGACGAGCCACCGCAATAC

                                   *         *           
        535 TCAAGCCAAGGATATCAACCTCAATTTGACGAGTCACCGCAATAC
          1 TCAAGCCAAGGATATCAACCTCAGTTTGACGAGCCACCGCAATAC

                 **           ** *              *   *    
        580 TCAAGGGAAGGATATCAAGTTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAACCTCAGTTTGACGAGCCACCGCAATAC

              
        625 TC
          1 TC

        627 TATTCCTCCC


Statistics
Matches: 79,  Mismatches: 13, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  45   79  1.00

ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAACCTCAGTTTGACGAGCCACCGCAATAC
Done.