Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011296.1 Kokia drynarioides strain JFW-HI SEQ_126276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 988

Length: 1648
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.35


Found at i:887 original size:13 final size:13

Alignment explanation


    Indices: 871--905  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        861 ATATAACTGA

                         
        871 TTCATATACCCAT
          1 TTCATATACCCAT

                    **   
        884 TTCATATAATCAT
          1 TTCATATACCCAT

                     
        897 TTCATATAC
          1 TTCATATAC

        906 TTAACACAAC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43


Consensus pattern (13 bp):   
TTCATATACCCAT
Done.