Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011301.1 Kokia drynarioides strain JFW-HI SEQ_126281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9127
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.32

Warning! 336 characters in sequence are not A, C, G, or T


Found at i:5959 original size:17 final size:18

Alignment explanation


    Indices: 5937--5978  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       5927 CTCTACCCTT

                               
       5937 AAAATTT-A-AAAAATGTA
          1 AAAATTTCATAAAAAT-TA

                        *     
       5954 AAAATTTCATAAGAATTA
          1 AAAATTTCATAAAAATTA

                   
       5972 AAAATTT
          1 AAAATTT

       5979 TAGTATGGAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  17    7  0.32
  18   10  0.45
  19    5  0.23

ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33


Consensus pattern (18 bp):   
AAAATTTCATAAAAATTA

Found at i:6120 original size:32 final size:33

Alignment explanation


    Indices: 6068--6135  Score: 111
    Period size: 32  Copynumber: 2.1  Consensus size: 33

       6058 AATATATAAT

                                     **      
       6068 TTTGATTTTTTTTTTAAAAAGTTGATCGTCAAA
          1 TTTGATTTTTTTTTTAAAAAGTTGAGAGTCAAA

                                             
       6101 TTTGATTTTTTTTTT-AAAAGTTGAGAGTCAAA
          1 TTTGATTTTTTTTTTAAAAAGTTGAGAGTCAAA

               
       6133 TTT
          1 TTT

       6136 AGCTCAAAGG


Statistics
Matches: 33,  Mismatches: 2, Indels: 1
        0.92            0.06        0.03

Matches are distributed among these distances:
  32   18  0.55
  33   15  0.45

ACGTcount: A:0.29, C:0.04, G:0.13, T:0.53


Consensus pattern (33 bp):   
TTTGATTTTTTTTTTAAAAAGTTGAGAGTCAAA
Done.