Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011304.1 Kokia drynarioides strain JFW-HI SEQ_126284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2194
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32


Found at i:216 original size:29 final size:29

Alignment explanation


    Indices: 183--243  Score: 113
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        173 TTACCTCAGA

                        *                
        183 TTACATTTTAGTTACTTATGTTTGAAATG
          1 TTACATTTTAGTCACTTATGTTTGAAATG

                                         
        212 TTACATTTTAGTCACTTATGTTTGAAATG
          1 TTACATTTTAGTCACTTATGTTTGAAATG

               
        241 TTA
          1 TTA

        244 ACGACAATCC


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.28, C:0.08, G:0.13, T:0.51


Consensus pattern (29 bp):   
TTACATTTTAGTCACTTATGTTTGAAATG
Done.