Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011312.1 Kokia drynarioides strain JFW-HI SEQ_126292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 152013
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Warning! 12 characters in sequence are not A, C, G, or T
Found at i:6122 original size:44 final size:43
Alignment explanation
Indices: 6072--6155 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 43
6062 AACATTCTCA
* *
6072 CAATCAATCATATCCTTTCAATAATAGGGAAACAATGTTCCTCT
1 CAATCAATCACATACTTTCAATAATA-GGAAACAATGTTCCTCT
*
6116 CAATCAATCACATACTTTCAATAATAGGAAACATTGTTCC
1 CAATCAATCACATACTTTCAATAATAGGAAACAATGTTCC
6156 AACTTTCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 13 0.35
44 24 0.65
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (43 bp):
CAATCAATCACATACTTTCAATAATAGGAAACAATGTTCCTCT
Found at i:9032 original size:12 final size:12
Alignment explanation
Indices: 9015--9044 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9005 TGACAGGTTC
9015 TTCTTCTTCTTT
1 TTCTTCTTCTTT
9027 TTCTTCTTCTTT
1 TTCTTCTTCTTT
*
9039 CTCTTC
1 TTCTTC
9045 CTTGTCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (12 bp):
TTCTTCTTCTTT
Found at i:27184 original size:24 final size:24
Alignment explanation
Indices: 27148--27193 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
27138 CAATTTTTTA
* *
27148 TTTGATGCGTAATTCTTGAATTAT
1 TTTGATGCGTAATGCATGAATTAT
27172 TTTGAATGC-TAATGCATGAATT
1 TTTG-ATGCGTAATGCATGAATT
27194 GGATGAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.46
Consensus pattern (24 bp):
TTTGATGCGTAATGCATGAATTAT
Found at i:37113 original size:17 final size:18
Alignment explanation
Indices: 37088--37121 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37078 TTAAAACCAT
*
37088 AAATACTAACCATTATTA
1 AAATACTAAACATTATTA
37106 AAAT-CTAAACATTATT
1 AAATACTAAACATTATT
37122 CTAGCTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATACTAAACATTATTA
Found at i:40836 original size:18 final size:20
Alignment explanation
Indices: 40804--40842 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
40794 TCAATTTTAC
40804 TTTATTTTATTTTTAT-CTT
1 TTTATTTTATTTTTATGCTT
40823 TTTATTTT-TTTTTATGCTT
1 TTTATTTTATTTTTATGCTT
40842 T
1 T
40843 CAAATAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTATTTTATTTTTATGCTT
Found at i:44659 original size:39 final size:39
Alignment explanation
Indices: 44595--44674 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
44585 TTGCATCCTT
44595 ATCCAAAACATGTGTTGGACAGCCTCATATCCTAAAGTG
1 ATCCAAAACATGTGTTGGACAGCCTCATATCCTAAAGTG
* *
44634 ATCCGAAACGTGTGTTGGACAGCCTCATATCCTAAAGTG
1 ATCCAAAACATGTGTTGGACAGCCTCATATCCTAAAGTG
44673 AT
1 AT
44675 TTGGAGTGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (39 bp):
ATCCAAAACATGTGTTGGACAGCCTCATATCCTAAAGTG
Found at i:47664 original size:2 final size:2
Alignment explanation
Indices: 47623--47653 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
47613 TCAACTATGG
47623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
47654 ACAGATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48661 original size:59 final size:61
Alignment explanation
Indices: 48580--48696 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
48570 ATCACTTTAA
* *
48580 TATTAAATTAACATAATATTTA-T-CAAGATAAATATTAGATAAAATTTAATATTAAATCT
1 TATTAAAATAACATAATATTTACTACAAGATAAATATTAAATAAAATTTAATATTAAATCT
* * *
48639 TATTAAAATAATATAATTTTTATCTACAAGATAAATATTAAATTAAATTTAATATTAA
1 TATTAAAATAACATAATATTTA-CTACAAGATAAATATTAAATAAAATTTAATATTAA
48697 GATAATCATT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 19 0.38
61 1 0.02
62 30 0.60
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (61 bp):
TATTAAAATAACATAATATTTACTACAAGATAAATATTAAATAAAATTTAATATTAAATCT
Found at i:48694 original size:17 final size:17
Alignment explanation
Indices: 48672--48768 Score: 71
Period size: 17 Copynumber: 5.7 Consensus size: 17
48662 CTACAAGATA
48672 AATATTAAATTAAATTT
1 AATATTAAATTAAATTT
48689 AATATTAAGA-TAATCATTTT
1 AATATTAA-ATTAA--A-TTT
**
48709 AATATTAAATT-AATAA
1 AATATTAAATTAAATTT
*
48725 AATACT--ATTAAGA--T
1 AATATTAAATTAA-ATTT
48739 AAGTATTAAATTAAATTT
1 AA-TATTAAATTAAATTT
48757 AATATTAAATTA
1 AATATTAAATTA
48769 TTAAAACAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 24
0.68 0.05 0.26
Matches are distributed among these distances:
14 5 0.08
15 4 0.06
16 8 0.13
17 27 0.43
18 4 0.06
19 3 0.05
20 12 0.19
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (17 bp):
AATATTAAATTAAATTT
Found at i:48695 original size:12 final size:12
Alignment explanation
Indices: 48670--48773 Score: 53
Period size: 12 Copynumber: 8.9 Consensus size: 12
48660 ATCTACAAGA
48670 TAAATATTAAAT
1 TAAATATTAAAT
48682 TAAAT-TTAATAT
1 TAAATATTAA-AT
* * *
48694 TAAGATAATCATT
1 TAA-ATATTAAAT
*
48707 TTAATATTAAAT
1 TAAATATTAAAT
48719 T-AATA--AAA-
1 TAAATATTAAAT
*
48727 T-ACTATTAAGA-
1 TAAATATTAA-AT
*
48738 TAAGTATTAAAT
1 TAAATATTAAAT
48750 TAAAT-TTAATAT
1 TAAATATTAA-AT
48762 TAAATTATTAAA
1 TAAA-TATTAAA
48774 ACAATACTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 21
0.70 0.10 0.21
Matches are distributed among these distances:
8 4 0.06
9 3 0.04
10 2 0.03
11 15 0.21
12 34 0.48
13 7 0.10
14 6 0.08
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:50079 original size:11 final size:12
Alignment explanation
Indices: 50049--50081 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
50039 GTCATAAGTG
50049 AATTAATTCACA
1 AATTAATTCACA
*
50061 AATGAATTCA-A
1 AATTAATTCACA
50072 AATTAATTCA
1 AATTAATTCA
50082 TCTTGGGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (12 bp):
AATTAATTCACA
Found at i:52123 original size:36 final size:36
Alignment explanation
Indices: 52083--52151 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
52073 TAAAAACCTT
*
52083 AGATATACAATTATCAAAGCATATAATAAGAAAGTC
1 AGATATACAATTATCAAACCATATAATAAGAAAGTC
52119 AGATATACAATTATCAAACCATATAATAAGAAA
1 AGATATACAATTATCAAACCATATAATAAGAAA
52152 CATTCAATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.25
Consensus pattern (36 bp):
AGATATACAATTATCAAACCATATAATAAGAAAGTC
Found at i:54343 original size:97 final size:98
Alignment explanation
Indices: 54115--54506 Score: 592
Period size: 97 Copynumber: 4.0 Consensus size: 98
54105 AAATAACAAA
* *
54115 TATATATATCTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGAGATTTATAAATTCATAAAG
1 TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGATTTATAAATTCATAAAG
* *
54180 ATGCAAATAGAGAATTATATAAATTGAATTTTT
66 ATGCAAATAGAGAATTATATAAATTGAACTTCT
* * * *
54213 TATATATACTCCCACATAGAAAGTGCAATAATTAAACTCGAGAAGGGATTTACAAATTCATAAAG
1 TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGATTTATAAATTCATAAAG
*
54278 ATACAAATAGAG-ATTATATAAATTGAACTTCT
66 ATGCAAATAGAGAATTATATAAATTGAACTTCT
*
54310 TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGACTTATAAATTCATAGAA
1 TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGATTTATAAATTCATA-AA
* * *
54375 -ATGCAAATAAAAAATTATATAAATTGAACTTAT
65 GATGCAAATAGAGAATTATATAAATTGAACTTCT
* * * *
54408 TATATATATTTCCACATAGAAAGTGCAACAA-TAAACTCAAAAAGGAATTTATAAATTCATAGAG
1 TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGATTTATAAATTCATAAAG
*
54472 ATGCAAATAGAGAATTATATAAATTTAACTTCT
66 ATGCAAATAGAGAATTATATAAATTGAACTTCT
54505 TA
1 TA
54507 ATAGAAATCA
Statistics
Matches: 264, Mismatches: 27, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
96 1 0.00
97 141 0.53
98 122 0.46
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.30
Consensus pattern (98 bp):
TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGATTTATAAATTCATAAAG
ATGCAAATAGAGAATTATATAAATTGAACTTCT
Found at i:54491 original size:195 final size:195
Alignment explanation
Indices: 54115--54506 Score: 599
Period size: 195 Copynumber: 2.0 Consensus size: 195
54105 AAATAACAAA
*
54115 TATATATATCTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGAGATTTATAAATTCATAAAG
1 TATATATATCTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGAGACTTATAAATTCATAAAG
* * * * *
54180 ATGCAAATAGAGAATTATATAAATTGAATTTTTTATATATACTCCCACATAGAAAGTGCAATAAT
66 ATGCAAATAAAAAATTATATAAATTGAACTTATTATATATACTCCCACATAGAAAGTGCAACAAT
* * *
54245 TAAACTCGAGAAGGGATTTACAAATTCATAAAGATACAAATAGAGATTATATAAATTGAACTTCT
131 TAAACTCAAAAAGGAATTTACAAATTCATAAAGATACAAATAGAGATTATATAAATTGAACTTCT
* *
54310 TATATATATTTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGGGACTTATAAATTCATAGAA
1 TATATATATCTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGAGACTTATAAATTCATA-AA
* *
54375 -ATGCAAATAAAAAATTATATAAATTGAACTTATTATATATATTTCCACATAGAAAGTGCAACAA
65 GATGCAAATAAAAAATTATATAAATTGAACTTATTATATATACTCCCACATAGAAAGTGCAACAA
* * * *
54439 -TAAACTCAAAAAGGAATTTATAAATTCATAGAGATGCAAATAGAGAATTATATAAATTTAACTT
130 TTAAACTCAAAAAGGAATTTACAAATTCATAAAGATACAAATAGAG-ATTATATAAATTGAACTT
54503 CT
194 CT
54505 TA
1 TA
54507 ATAGAAATCA
Statistics
Matches: 178, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
194 39 0.22
195 137 0.77
196 2 0.01
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.30
Consensus pattern (195 bp):
TATATATATCTCCACATAGAAAGTGCAACAATTAAACTCGAGAAGAGACTTATAAATTCATAAAG
ATGCAAATAAAAAATTATATAAATTGAACTTATTATATATACTCCCACATAGAAAGTGCAACAAT
TAAACTCAAAAAGGAATTTACAAATTCATAAAGATACAAATAGAGATTATATAAATTGAACTTCT
Found at i:54764 original size:3 final size:3
Alignment explanation
Indices: 54758--54787 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
54748 AATAATAATA
54758 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
54788 CAAAGAACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:62183 original size:18 final size:18
Alignment explanation
Indices: 62151--62189 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
62141 GAAAAGGGTA
*
62151 TTTTCTTTTCTTTTTCTT
1 TTTTCTTTTCTTTTTATT
62169 TTTTCTTTT-TATTTTATT
1 TTTTCTTTTCT-TTTTATT
62187 TTT
1 TTT
62190 CTTGCGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTCTTTTCTTTTTATT
Found at i:62566 original size:26 final size:26
Alignment explanation
Indices: 62537--62626 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 26
62527 ATATTTAGTA
*
62537 TTTTTTTCTTAATTTGGCATCTAAAT
1 TTTTTTTCTTAATTTGGTATCTAAAT
* * *
62563 TTTTTTACCTAATTTGGTATTTAAACT
1 TTTTTTTCTTAATTTGGTATCTAAA-T
62590 TACACTTTTTT-TCTAATTTGGTATCTAAAT
1 T----TTTTTTCT-TAATTTGGTATCTAAAT
62620 TTTTTTT
1 TTTTTTT
62627 GACCCAATTT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
26 27 0.53
27 2 0.04
30 2 0.04
31 20 0.39
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.59
Consensus pattern (26 bp):
TTTTTTTCTTAATTTGGTATCTAAAT
Found at i:62607 original size:57 final size:61
Alignment explanation
Indices: 62536--62666 Score: 182
Period size: 59 Copynumber: 2.2 Consensus size: 61
62526 AATATTTAGT
* *
62536 ATTTTTTTCTTAATTTGGCATCTAAA-TTTTTTT-ACCTAATTTGGTATTTAAACTT-ACA
1 ATTTTTTTCTTAATTTGGCATCTAAATTTTTTTTGACCCAATTTGGTACTTAAACTTGACA
* * *
62594 CTTTTTTTC-TAATTTGGTATCTAAATTTTTTTTGACCCAATTTGGTACTTGAACTTGACA
1 ATTTTTTTCTTAATTTGGCATCTAAATTTTTTTTGACCCAATTTGGTACTTAAACTTGACA
62654 A-TTTTTTCTTAAT
1 ATTTTTTTCTTAAT
62667 ATGATACCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
57 15 0.24
58 15 0.24
59 26 0.41
60 7 0.11
ACGTcount: A:0.25, C:0.13, G:0.08, T:0.53
Consensus pattern (61 bp):
ATTTTTTTCTTAATTTGGCATCTAAATTTTTTTTGACCCAATTTGGTACTTAAACTTGACA
Found at i:62951 original size:32 final size:31
Alignment explanation
Indices: 62907--63033 Score: 109
Period size: 32 Copynumber: 4.2 Consensus size: 31
62897 AGATCCCAAA
*
62907 AAGTTTAAGTACCAACTTAAAAAAAAAGCGTC
1 AAGTTTAAGTACCAAATTAAAAAAAAA-CGTC
* ** *
62939 AAGTTTAGGTACCAAATTAGGAAAAAATGTC
1 AAGTTTAAGTACCAAATTAAAAAAAAACGTC
* * * **
62970 AAGTTTGAGTACGAAATTGGACCAAAAA----
1 AAGTTTAAGTACCAAATT-AAAAAAAAACGTC
*
62998 AAGTTTAAGTACCAAATTAAAAAAAAATGTC
1 AAGTTTAAGTACCAAATTAAAAAAAAACGTC
63029 AAGTT
1 AAGTT
63034 CAAGAACAAA
Statistics
Matches: 73, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
27 6 0.08
28 16 0.22
31 23 0.32
32 28 0.38
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.24
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAAAAAAAAACGTC
Found at i:62961 original size:90 final size:90
Alignment explanation
Indices: 62853--63033 Score: 253
Period size: 91 Copynumber: 2.0 Consensus size: 90
62843 TTAAAAAATA
*
62853 TTAGGTACCAAATTAGGAAAAAA-GTCAAGTTCAG-GTATC-AAATTAGATCC-CAAAAAGTTTA
1 TTAGGTACCAAATTAGGAAAAAATGTCAAGTT-AGAGTA-CGAAATTAGA-CCAAAAAAAGTTTA
*
62914 AGTACCAACTTAAAAAAAAAGCGTCAAGT
63 AGTACCAAATTAAAAAAAAA-CGTCAAGT
* *
62943 TTAGGTACCAAATTAGGAAAAAATGTCAAGTTTGAGTACGAAATTGGACCAAAAAAAGTTTAAGT
1 TTAGGTACCAAATTAGGAAAAAATGTCAAGTTAGAGTACGAAATTAGACCAAAAAAAGTTTAAGT
*
63008 ACCAAATTAAAAAAAAATGTCAAGT
66 ACCAAATTAAAAAAAAACGTCAAGT
63033 T
1 T
63034 CAAGAACAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
90 35 0.43
91 47 0.57
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (90 bp):
TTAGGTACCAAATTAGGAAAAAATGTCAAGTTAGAGTACGAAATTAGACCAAAAAAAGTTTAAGT
ACCAAATTAAAAAAAAACGTCAAGT
Found at i:64173 original size:20 final size:20
Alignment explanation
Indices: 64134--64202 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
64124 TTTTGAAACA
*
64134 ATTTTAAAATCAAGTTAAAATG
1 ATTTT-AAA-CAAGTCAAAATG
64156 ATTTTAAACAAGTCAAAATG
1 ATTTTAAACAAGTCAAAATG
* * *
64176 ATTTCAACCAAGTCAAAATC
1 ATTTTAAACAAGTCAAAATG
64196 ATTTTAA
1 ATTTTAA
64203 CACTTAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 34 0.81
21 3 0.07
22 5 0.12
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (20 bp):
ATTTTAAACAAGTCAAAATG
Found at i:67516 original size:30 final size:30
Alignment explanation
Indices: 67482--67538 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
67472 CACAGCCTGG
* *
67482 CACATGGCCGTGTGCCCAGCTTGTGTGGCT
1 CACATGGCCGTGCGCCCAGCTCGTGTGGCT
*
67512 CACATGGCCGTGCGTCCAGCTCGTGTG
1 CACATGGCCGTGCGCCCAGCTCGTGTG
67539 ACTCCTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.11, C:0.32, G:0.33, T:0.25
Consensus pattern (30 bp):
CACATGGCCGTGCGCCCAGCTCGTGTGGCT
Found at i:69387 original size:18 final size:18
Alignment explanation
Indices: 69330--69386 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
69320 AATGCATAAT
*
69330 AAAATAGAAATAAAAATG
1 AAAATAAAAATAAAAATG
* *
69348 AAAATGAAAATGAAAATG
1 AAAATAAAAATAAAAATG
69366 AAAATAAAAATAAAAAT-
1 AAAATAAAAATAAAAATG
69383 AAAA
1 AAAA
69387 AATACATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 4 0.12
18 30 0.88
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (18 bp):
AAAATAAAAATAAAAATG
Found at i:69390 original size:7 final size:6
Alignment explanation
Indices: 69330--69387 Score: 71
Period size: 6 Copynumber: 9.7 Consensus size: 6
69320 AATGCATAAT
* * * * *
69330 AAAATA GAAATA AAAATG AAAATG AAAATG AAAATG AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
69378 AAAATA AAAA
1 AAAATA AAAA
69388 ATACATAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:69464 original size:19 final size:19
Alignment explanation
Indices: 69427--69464 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69417 TTTTCATTTT
*
69427 TTAAAAAATAACATGAAAA
1 TTAAAAAATAACATAAAAA
69446 TTAAATAAATAA-ATAAAAA
1 TTAAA-AAATAACATAAAAA
69465 CAAAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (19 bp):
TTAAAAAATAACATAAAAA
Found at i:71479 original size:20 final size:20
Alignment explanation
Indices: 71452--71495 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
71442 ATTAAAATGT
*
71452 AAAA-ATTAAATTAAAAACA
1 AAAATATTAAAATAAAAACA
* *
71471 AAAATATTAAAATACAAATA
1 AAAATATTAAAATAAAAACA
71491 AAAAT
1 AAAAT
71496 GGCTAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAATATTAAAATAAAAACA
Found at i:76038 original size:37 final size:37
Alignment explanation
Indices: 75997--76071 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
75987 CTTTATTTTG
*
75997 ATTGAAC-TCAATTGCTTTATTAGA-ATTTATAGATACA
1 ATTGAACTTCAA-TGATTTATT-GATATTTATAGATACA
* *
76034 ATTGAACTTGAATGATTTATTGATATTTTTAGATACA
1 ATTGAACTTCAATGATTTATTGATATTTATAGATACA
76071 A
1 A
76072 GTTATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 2 0.06
37 28 0.85
38 3 0.09
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (37 bp):
ATTGAACTTCAATGATTTATTGATATTTATAGATACA
Found at i:78901 original size:43 final size:44
Alignment explanation
Indices: 78819--78902 Score: 118
Period size: 43 Copynumber: 1.9 Consensus size: 44
78809 AAACATTTGA
* *
78819 TGTATAAAAAGGAAGACTCATGTCTCGGGTTGAACATGAGAATT
1 TGTATAAAAAGGAAGACTCATGTCTCGAGATGAACATGAGAATT
*
78863 TGTAT-AAATGGAAGACTCATGTCTCGAGATGAGA-ATGAGA
1 TGTATAAAAAGGAAGACTCATGTCTCGAGATGA-ACATGAGA
78903 GAGATGAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 30 0.83
44 6 0.17
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (44 bp):
TGTATAAAAAGGAAGACTCATGTCTCGAGATGAACATGAGAATT
Found at i:78908 original size:15 final size:15
Alignment explanation
Indices: 78888--78917 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78878 CTCATGTCTC
78888 GAGATGAGAATGAGA
1 GAGATGAGAATGAGA
78903 GAGATGAGAATGAGA
1 GAGATGAGAATGAGA
78918 TTATGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.13
Consensus pattern (15 bp):
GAGATGAGAATGAGA
Found at i:78961 original size:42 final size:42
Alignment explanation
Indices: 78903--79030 Score: 175
Period size: 42 Copynumber: 3.0 Consensus size: 42
78893 GAGAATGAGA
*
78903 GAGATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTT
1 GAGATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTC
*
78945 GAGAAGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTC
1 GAGATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTC
* * * * * * *
78987 GGGATGAGAATGAGAATATAATTTAAGTAAGACTTATGACTC
1 GAGATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTC
79029 GA
1 GA
79031 TAGAGCATAA
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.40, C:0.08, G:0.26, T:0.27
Consensus pattern (42 bp):
GAGATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTC
Found at i:79639 original size:21 final size:21
Alignment explanation
Indices: 79613--79666 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
79603 CTGTGCATGT
*
79613 TTGTATCAGTAGTTAGAATAC
1 TTGTATCGGTAGTTAGAATAC
79634 TTGTATCGGTAGTTAGAATAC
1 TTGTATCGGTAGTTAGAATAC
79655 TTGTATCGGTAG
1 TTGTATCGGTAG
79667 AAGTTGCAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (21 bp):
TTGTATCGGTAGTTAGAATAC
Found at i:79729 original size:21 final size:21
Alignment explanation
Indices: 79705--79760 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
79695 CTGAAGTTTT
79705 TAGTATCGGTAGAAGCATA-AC
1 TAGTATCGGTAGAAG-ATACAC
* * * *
79726 TAGTTTTGGTAGATGTTACAC
1 TAGTATCGGTAGAAGATACAC
*
79747 TTGTATCGGTAGAA
1 TAGTATCGGTAGAA
79761 CTATCATAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (21 bp):
TAGTATCGGTAGAAGATACAC
Found at i:80659 original size:26 final size:25
Alignment explanation
Indices: 80612--80660 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
80602 CTTATCTTGT
*
80612 AGTTTTGATTTTAAAAAAAAAAAAA
1 AGTTTAGATTTTAAAAAAAAAAAAA
* *
80637 AGTTTAGATTTTTAAAAATAAAAA
1 AGTTTAGATTTTAAAAAAAAAAAA
80661 TATGTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AGTTTAGATTTTAAAAAAAAAAAAA
Found at i:83076 original size:18 final size:18
Alignment explanation
Indices: 83038--83078 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
83028 TTTTTTTAGG
83038 ATTTT-AAAATCGAATTA
1 ATTTTAAAAATCGAATTA
*
83055 ATTTTAAAAATTGAAGTT-
1 ATTTTAAAAATCGAA-TTA
83073 ATTTTA
1 ATTTTA
83079 CTAGAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 5 0.24
18 14 0.67
19 2 0.10
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (18 bp):
ATTTTAAAAATCGAATTA
Found at i:87253 original size:24 final size:23
Alignment explanation
Indices: 87202--87265 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
87192 TAACTTAATC
* *
87202 GAACATTTTCACGAACATTAAAT
1 GAACATGTCCACGAACATTAAAT
* *
87225 GAACATGTCCATGAACATATAATT
1 GAACATGTCCACGAACAT-TAAAT
*
87249 GAACATGTTCACGAACA
1 GAACATGTCCACGAACA
87266 ATTGTAATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 15 0.44
24 19 0.56
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (23 bp):
GAACATGTCCACGAACATTAAAT
Found at i:87295 original size:15 final size:15
Alignment explanation
Indices: 87275--87306 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87265 AATTGTAATG
87275 AACAATAAACAAACA
1 AACAATAAACAAACA
*
87290 AACAATAAATAAACA
1 AACAATAAACAAACA
87305 AA
1 AA
87307 TACATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.16, G:0.00, T:0.09
Consensus pattern (15 bp):
AACAATAAACAAACA
Found at i:99840 original size:25 final size:25
Alignment explanation
Indices: 99812--99864 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
99802 TCAAACGAGC
99812 CCAGACAAAA-TATCGCTCATACAAG
1 CCAGACAAAATTA-CGCTCATACAAG
* * *
99837 CCAGATAGAATTACGCTCTTACAAG
1 CCAGACAAAATTACGCTCATACAAG
99862 CCA
1 CCA
99865 TAATTAGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (25 bp):
CCAGACAAAATTACGCTCATACAAG
Found at i:113618 original size:2 final size:2
Alignment explanation
Indices: 113602--113636 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
113592 TTGTACAGTA
*
113602 AT AT AT A- AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113637 TTCTTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:116474 original size:16 final size:16
Alignment explanation
Indices: 116453--116483 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
116443 ATAATGTGAA
116453 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
116469 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
116484 GGATCCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:117318 original size:26 final size:26
Alignment explanation
Indices: 117282--117334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
117272 TTCTGGGTGA
117282 AATTCTGGACACGTTCATGCAGCGAC
1 AATTCTGGACACGTTCATGCAGCGAC
* * *
117308 AATTTTGGACATGTTCATGTAGCGAC
1 AATTCTGGACACGTTCATGCAGCGAC
117334 A
1 A
117335 TTCCTAGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AATTCTGGACACGTTCATGCAGCGAC
Found at i:121899 original size:53 final size:53
Alignment explanation
Indices: 121819--122106 Score: 298
Period size: 53 Copynumber: 5.5 Consensus size: 53
121809 GAAAAAGGTT
* ** * * *
121819 CGATGACTAAGTGTCATCGTGAGTATATGAAATCCTTTATGGACTATGTGATC
1 CGATGACTATGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGGGGTC
* ** *
121872 CGATGACTATGTGTCATCGTGAGTATATGAAGTCCTTTATGGATTATGGGGTT
1 CGATGACTATGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGGGGTC
* * * *
121925 TGATGACTATATGTCATCATGAG-ATTATGAAATCCTTTACAGATTATGGGGTT
1 CGATGACTATGTGTCATCGTGAGTA-TATGAAATCCTTTACAGATTATGGGGTC
* * * *
121978 CGATGACTACGTGTCATCGTGAGTATATGAAGTCCTTTACAAATTATGAGGTC
1 CGATGACTATGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGGGGTC
* * * * * *
122031 CGATAACTATATGTCATCGTGAG-ATTATG-ATTCCTTTACAGGTTAAGAGGTC
1 CGATGACTATGTGTCATCGTGAGTA-TATGAAATCCTTTACAGATTATGGGGTC
*
122083 CGATGACTA--TGTCATTGTGAGTAT
1 CGATGACTATGTGTCATCGTGAGTAT
122107 TAAATGAAAA
Statistics
Matches: 202, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
50 12 0.06
51 1 0.00
52 29 0.14
53 159 0.79
54 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.35
Consensus pattern (53 bp):
CGATGACTATGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGGGGTC
Found at i:122005 original size:106 final size:105
Alignment explanation
Indices: 121814--122106 Score: 351
Period size: 106 Copynumber: 2.8 Consensus size: 105
121804 TAAATGAAAA
** * * *
121814 AGGTTCGATGACTA-AGTGTCATCGTGAG-TATATGAAATCCTTTATGGACTATGTGATCCGATG
1 AGGTTCGATGACTATA-TGTCATCGTGAGAT-TATGAAATCCTTTACAGATTATGAGGTCCGATG
***
121877 ACTATGTGTCATCGTGAGTATATGAAGTCCTTTATGGATTATG
64 ACTA-GTGTCATCGTGAGTATATGAAGTCCTTTACAAATTATG
* * * * *
121920 GGGTTTGATGACTATATGTCATCATGAGATTATGAAATCCTTTACAGATTATGGGGTTCGATGAC
1 AGGTTCGATGACTATATGTCATCGTGAGATTATGAAATCCTTTACAGATTATGAGGTCCGATGAC
121985 TACGTGTCATCGTGAGTATATGAAGTCCTTTACAAATTATG
66 TA-GTGTCATCGTGAGTATATGAAGTCCTTTACAAATTATG
* * * * *
122026 AGGTCCGATAACTATATGTCATCGTGAGATTATG-ATTCCTTTACAGGTTAAGAGGTCCGATGAC
1 AGGTTCGATGACTATATGTCATCGTGAGATTATGAAATCCTTTACAGATTATGAGGTCCGATGAC
*
122090 TA-TGTCATTGTGAGTAT
66 TAGTGTCATCGTGAGTAT
122107 TAAATGAAAA
Statistics
Matches: 161, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
103 14 0.09
105 27 0.17
106 118 0.73
107 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (105 bp):
AGGTTCGATGACTATATGTCATCGTGAGATTATGAAATCCTTTACAGATTATGAGGTCCGATGAC
TAGTGTCATCGTGAGTATATGAAGTCCTTTACAAATTATG
Found at i:122649 original size:21 final size:21
Alignment explanation
Indices: 122623--122673 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
122613 CATACTTGTT
122623 TCGGTAGAACTCACACATGTA
1 TCGGTAGAACTCACACATGTA
122644 TCGGTAGAACTCACACATGTA
1 TCGGTAGAACTCACACATGTA
122665 TCGGTAGAA
1 TCGGTAGAA
122674 GTACAGGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (21 bp):
TCGGTAGAACTCACACATGTA
Found at i:131795 original size:44 final size:46
Alignment explanation
Indices: 131722--131809 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 46
131712 GAAATGAACA
* *
131722 GAAATAGAGAAATGGAAAATATTCTGAAATGATTATGGTTTTCTCT
1 GAAATAAAGAAATGGAAAATATTCTGAAATGAATATGGTTTTCTCT
*
131768 GAAATAAAGAAAT-G-AAATCATT-TGAAATGAATGTGGTTTTCT
1 GAAATAAAGAAATGGAAAAT-ATTCTGAAATGAATATGGTTTTCT
131810 TAAAATGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 22 0.58
45 4 0.11
46 12 0.32
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34
Consensus pattern (46 bp):
GAAATAAAGAAATGGAAAATATTCTGAAATGAATATGGTTTTCTCT
Found at i:131846 original size:19 final size:18
Alignment explanation
Indices: 131811--131848 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
131801 TGGTTTTCTT
*
131811 AAAATGGAAATAGAAATG
1 AAAATGAAAATAGAAATG
131829 AAAATGAAAATGAGAAATG
1 AAAATGAAAAT-AGAAATG
131848 A
1 A
131849 TTCATTAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (18 bp):
AAAATGAAAATAGAAATG
Found at i:134127 original size:25 final size:25
Alignment explanation
Indices: 134080--134137 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
134070 GTGCAACAGG
* *
134080 CAAAACACACCACAAAGGCGACATA
1 CAAAATACACCACAAAGACGACATA
* * *
134105 TAAAATACACTACAAAGATGACATA
1 CAAAATACACCACAAAGACGACATA
134130 CAAAATAC
1 CAAAATAC
134138 GTGTTTACTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.55, C:0.24, G:0.09, T:0.12
Consensus pattern (25 bp):
CAAAATACACCACAAAGACGACATA
Found at i:142874 original size:2 final size:2
Alignment explanation
Indices: 142867--142896 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
142857 CATCATGCCG
142867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
142897 CTTATTTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:146539 original size:2 final size:2
Alignment explanation
Indices: 146532--146563 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
146522 TACATAGGCT
146532 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
146564 TGTGTTGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:151114 original size:11 final size:11
Alignment explanation
Indices: 151098--151123 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
151088 GGTTCGACTG
151098 ATTAAAGAAAA
1 ATTAAAGAAAA
151109 ATTAAAGAAAA
1 ATTAAAGAAAA
151120 ATTA
1 ATTA
151124 GAAGTCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (11 bp):
ATTAAAGAAAA
Found at i:151983 original size:3 final size:3
Alignment explanation
Indices: 151971--152002 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
151961 TAAAATATAA
151971 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
152003 ATAAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Done.