Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011313.1 Kokia drynarioides strain JFW-HI SEQ_126293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5031
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.36


Found at i:4506 original size:16 final size:16

Alignment explanation


    Indices: 4485--4527  Score: 50
    Period size: 16  Copynumber: 2.7  Consensus size: 16

       4475 ATATATTTTT

                   *   *    
       4485 AAAAATTTAAACAACA
          1 AAAAATTAAAAAAACA

                          * 
       4501 AAAAATTAAAAAAAGA
          1 AAAAATTAAAAAAACA

                  *    
       4517 AAAAATCAAAA
          1 AAAAATTAAAA

       4528 CGACATCTCC


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  16   23  1.00

ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14


Consensus pattern (16 bp):   
AAAAATTAAAAAAACA
Done.