Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011314.1 Kokia drynarioides strain JFW-HI SEQ_126294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26184
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:7818 original size:25 final size:26
Alignment explanation
Indices: 7790--7838 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7780 AGTTAATTAA
*
7790 ATTTCTTTAAAA-AAATCTCTCATAC
1 ATTTCTTTAAAAGAAATCACTCATAC
7815 ATTTCTTTAAAAGAAATCACTCAT
1 ATTTCTTTAAAAGAAATCACTCAT
7839 GCATAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (26 bp):
ATTTCTTTAAAAGAAATCACTCATAC
Found at i:11841 original size:23 final size:23
Alignment explanation
Indices: 11815--11858 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
11805 AAATACATTT
*
11815 AAAATT-TAATTTTAATTTTAAGG
1 AAAATTAT-ATTTTAAATTTAAGG
11838 AAAATTATATTTTAAATTTAA
1 AAAATTATATTTTAAATTTAA
11859 TATTTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
AAAATTATATTTTAAATTTAAGG
Found at i:12308 original size:13 final size:12
Alignment explanation
Indices: 12289--12332 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
12279 AGAAATTTTG
12289 TTTTCTTTTCCC
1 TTTTCTTTTCCC
*
12301 TATTTCTTCTCCC
1 T-TTTCTTTTCCC
* *
12314 TTTCCTTTTCCA
1 TTTTCTTTTCCC
12326 TTTTCTT
1 TTTTCTT
12333 GTTTACATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.05, C:0.32, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTTCTTTTCCC
Found at i:13893 original size:43 final size:43
Alignment explanation
Indices: 13806--13886 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
13796 TTAATAAACA
* * *
13806 AATTTTAAATTTAAATTTATTTTAAATTTAAAATGTCCAATAC
1 AATTTTAAATTTAAATTTATTTTAAATTAAAAAGGCCCAATAC
*
13849 AATTTTAAATTTAATTTTA-TTTAAATTAAAAAGGCCCA
1 AATTTTAAATTTAAATTTATTTTAAATTAAAAAGGCCCA
13887 TTTACAAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 16 0.47
43 18 0.53
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (43 bp):
AATTTTAAATTTAAATTTATTTTAAATTAAAAAGGCCCAATAC
Found at i:14473 original size:11 final size:11
Alignment explanation
Indices: 14457--14488 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
14447 TCGAAACATT
14457 TAATAAATAAA
1 TAATAAATAAA
*
14468 TAATAAATACA
1 TAATAAATAAA
14479 TAATAAATAA
1 TAATAAATAA
14489 CAAAAAGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:14823 original size:13 final size:12
Alignment explanation
Indices: 14795--14820 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14785 ATACAAAACC
14795 TTGATTTTTTTT
1 TTGATTTTTTTT
14807 TTGATTTTTTTT
1 TTGATTTTTTTT
14819 TT
1 TT
14821 TGAAGATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (12 bp):
TTGATTTTTTTT
Found at i:23726 original size:48 final size:48
Alignment explanation
Indices: 23603--23732 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 48
23593 CCACCTTCTA
**
23603 GATGAGATACAGAGAAGTGGATCAAAGAAATAAAGCGACCATCTTCCT
1 GATGAGATACAGAGAAGTGGATCAAATCAATAAAGCGACCATCTTCCT
* * * **
23651 GATGAGACACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCT
1 GATGAGATACAGAGAAGTGGATCAAATCAATAAAGCGACCATCTTCCT
* *
23699 GATGAGATACAGAGAAGTAGACCAAATCAATAAA
1 GATGAGATACAGAGAAGTGGATCAAATCAATAAA
23733 TCGAAGCTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.19
Consensus pattern (48 bp):
GATGAGATACAGAGAAGTGGATCAAATCAATAAAGCGACCATCTTCCT
Found at i:23916 original size:85 final size:85
Alignment explanation
Indices: 23768--23932 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 85
23758 CAAGCCCTAT
* * *** * * *
23768 CTTCCTGATGAGATATAGAGAAGTTGATCAAAGCAATAAAGTGGTTATCTTCCTGATGAGATACA
1 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCAATCATCTTCCTAATAAGATACA
*
23833 GAGAAATGGACCAAATTTGC
66 GAGAAATAGACCAAATTTGC
* * * *
23853 CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATATAGCAATCATCTTCCTAATAAGATACA
1 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCAATCATCTTCCTAATAAGATACA
*
23918 GAGAAGTAGACCAAA
66 GAGAAATAGACCAAA
23933 CCAATGAAGC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
85 66 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (85 bp):
CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCAATCATCTTCCTAATAAGATACA
GAGAAATAGACCAAATTTGC
Found at i:24028 original size:207 final size:207
Alignment explanation
Indices: 23645--24139 Score: 715
Period size: 207 Copynumber: 2.4 Consensus size: 207
23635 AAGCGACCAT
* * *
23645 CTTCCTGATGAGACACAGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACA
1 CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAAT-AAGCGATCATCTTCCTGATGAGATACA
* * * *
23710 GAGAAGTAGACCAAATCAATAAATCGAAGCTCATTACGAATGAGACTTCAAGCCCTATCTTCCTG
65 GAGAAGTAGACCAAACCAATAAAGCGAAGCTCAATACGAATGAGACTTCAAACCCTATCTTCCTG
* * * * *
23775 ATGAGATATAGAGAAGTTGATCAAAGCAATAAAGTGGTTATCTTCCTGATGAGATACAGAGAAAT
130 ATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGGTAATCTTCCTGATGAGATACAGAGAAAT
*
23840 GGACCAAATTTGC
195 GGACCAAATCTGC
* * *
23853 CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATATAGCAATCATCTTCCTAATAAGATACA
1 CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATA-AGCGATCATCTTCCTGATGAGATACA
*
23918 GAGAAGTAGACCAAACCAATGAAGC-AAGCTCAATACGAATGAGACTTCAAA-CCTCATCTTCCT
65 GAGAAGTAGACCAAACCAATAAAGCGAAGCTCAATACGAATGAGACTTCAAACCCT-ATCTTCCT
* *
23981 GATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTAATCTTCCTGATGAGATACAGAGAAG
129 GATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGGTAATCTTCCTGATGAGATACAGAGAAA
24046 TGGACCAAATCTGC
194 TGGACCAAATCTGC
* * * * *
24060 CTTCTTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCGACCATCTTCCTGGTGAGATACA
1 CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAAT-AAGCGATCATCTTCCTGATGAGATACA
*
24125 GAGAAGTGGACCAAA
65 GAGAAGTAGACCAAA
24140 TCTGCCTTCC
Statistics
Matches: 256, Mismatches: 28, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
206 3 0.01
207 173 0.68
208 80 0.31
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (207 bp):
CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATAAGCGATCATCTTCCTGATGAGATACAG
AGAAGTAGACCAAACCAATAAAGCGAAGCTCAATACGAATGAGACTTCAAACCCTATCTTCCTGA
TGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGGTAATCTTCCTGATGAGATACAGAGAAATG
GACCAAATCTGC
Found at i:24045 original size:48 final size:45
Alignment explanation
Indices: 23973--24139 Score: 152
Period size: 48 Copynumber: 3.8 Consensus size: 45
23963 TTCAAACCTC
* *
23973 ATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGG
1 ATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGC-G
* *
24019 TAATCTTCCTGATGAGATACAGAGAAGTGGACCAAATC--T---GC-
1 --ATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCG
* *
24060 --CTTCTTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCG
1 ATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCG
* *
24103 ACCATCTTCCTGGTGAGATACAGAGAAGTGGACCAAA
1 ---ATCTTCCTGATGAGATACAGAGAAGTGGATCAAA
24140 TCTGCCTTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
37 30 0.31
39 1 0.01
42 2 0.02
43 2 0.02
46 1 0.01
48 60 0.62
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (45 bp):
ATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCG
Found at i:24069 original size:37 final size:37
Alignment explanation
Indices: 24023--24171 Score: 145
Period size: 37 Copynumber: 3.7 Consensus size: 37
24013 AAGCGGTAAT
24023 CTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGC
1 CTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGC
* * * *
24060 CTTCTTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCGACC
1 CTTCCTGATGAGATACAGAGAAGTGGACCAAATC--T-----G--C
*
24106 ATCTTCCTGGTGAGATACAGAGAAGTGGACCAAATCTGC
1 --CTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGC
*
24145 CTTCCTGATAAGATACAGAGAAGTGGA
1 CTTCCTGATGAGATACAGAGAAGTGGA
24172 TTAAATCAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
37 55 0.61
39 2 0.02
41 1 0.01
44 1 0.01
46 2 0.02
48 29 0.32
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (37 bp):
CTTCCTGATGAGATACAGAGAAGTGGACCAAATCTGC
Found at i:24123 original size:85 final size:85
Alignment explanation
Indices: 23975--24226 Score: 337
Period size: 85 Copynumber: 3.0 Consensus size: 85
23965 CAAACCTCAT
* * * * *
23975 CTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTAATCTTCCTGATGAGATACA
1 CTTCCTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACA
24040 GAGAAGTGGACCAAATCTGC
66 GAGAAGTGGACCAAATCTGC
* * *
24060 CTTCTTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCGACCATCTTCCTGGTGAGATACA
1 CTTCCTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACA
24125 GAGAAGTGGACCAAATCTGC
66 GAGAAGTGGACCAAATCTGC
* * * * *
24145 CTTCCTGAT-AAGATACAGAGAAGTGGATTAAATCAATGAAGC-AGTCATCATCCTAATGAGATA
1 CTTCCTGATGAA-ATACAGAGAAGTGGATCAAAGCAATAAAGCGA-TCATCTTCCTGATGAGATA
* *
24208 CAAAGAAGTTGACCAAATC
64 CAGAGAAGTGGACCAAATC
24227 AATGAAACGA
Statistics
Matches: 147, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
84 3 0.02
85 144 0.98
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (85 bp):
CTTCCTGATGAAATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACA
GAGAAGTGGACCAAATCTGC
Found at i:24370 original size:160 final size:160
Alignment explanation
Indices: 24195--24536 Score: 479
Period size: 160 Copynumber: 2.1 Consensus size: 160
24185 GCAGTCATCA
* * *
24195 TCCTAATGAGATACAAAGAAGTTGACCAAATCAA-TGAAACGAAGCTCAATATGAATGAGACTTC
1 TCCTAATGAGATACAAAGAAGTAGACCAAATCAACAG-AACGAAGCTCAATACGAATGAGACTTC
* * *
24259 AAACCCCATCTTCCTAATGAGATATAGAGAAGTGGGTCAAAGTAATAAAGTGGTCATCTTCCTGA
65 AAACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGA
* * * * *
24324 TGAGATATAGAGAAGTGGATCAAATCCACCT
130 TAAGATACAAAGAAGTAGACCAAATCCACCT
* ** *
24355 TCCTAATGAGATACAAAGAAGTAGCCCAAATCAACAGAGTGAAGCTCAATACGAATTAGACTTCA
1 TCCTAATGAGATACAAAGAAGTAGACCAAATCAACAGAACGAAGCTCAATACGAATGAGACTTCA
* *
24420 AACTCTATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGAT
66 AACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGAT
*
24485 AAGATACAAAGAAGTAGACCAAATCCGCCT
131 AAGATACAAAGAAGTAGACCAAATCCACCT
** *
24515 TTTTTATGAGATACAAAGAAGT
1 TCCTAATGAGATACAAAGAAGT
24537 GGATTAAATA
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
160 159 0.99
161 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (160 bp):
TCCTAATGAGATACAAAGAAGTAGACCAAATCAACAGAACGAAGCTCAATACGAATGAGACTTCA
AACCCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGAT
AAGATACAAAGAAGTAGACCAAATCCACCT
Found at i:24385 original size:37 final size:37
Alignment explanation
Indices: 24316--24386 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 37
24306 AAGTGGTCAT
* * * * *
24316 CTTCCTGATGAGATATAGAGAAGTGGATCAAATCCAC
1 CTTCCTAATGAGATACAAAGAAGTAGACCAAATCCAC
*
24353 CTTCCTAATGAGATACAAAGAAGTAGCCCAAATC
1 CTTCCTAATGAGATACAAAGAAGTAGACCAAATC
24387 AACAGAGTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 28 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (37 bp):
CTTCCTAATGAGATACAAAGAAGTAGACCAAATCCAC
Found at i:24535 original size:85 final size:85
Alignment explanation
Indices: 24435--24594 Score: 250
Period size: 85 Copynumber: 1.9 Consensus size: 85
24425 TATCTTCCTA
*
24435 ATGAGATACAAAGAAGTGGGTCAAAGT-AATAAAGCGGTCATCTTCCTGATAAGATACAAAGAAG
1 ATGAGATACAAAGAAGTGGATCAAA-TAAATAAAGCGGTCATCTTCCTGATAAGATACAAAGAAG
24499 TAGACCAAATCCGCCTTTTTT
65 TAGACCAAATCCGCCTTTTTT
* * * * *
24520 ATGAGATACAAAGAAGTGGATTAAATAAATGAAGCGGTCATCTTCTTGATGAGATATAAAGAAGT
1 ATGAGATACAAAGAAGTGGATCAAATAAATAAAGCGGTCATCTTCCTGATAAGATACAAAGAAGT
24585 AGACCAAATC
66 AGACCAAATC
24595 AATGAAGCGA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
84 1 0.01
85 67 0.99
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (85 bp):
ATGAGATACAAAGAAGTGGATCAAATAAATAAAGCGGTCATCTTCCTGATAAGATACAAAGAAGT
AGACCAAATCCGCCTTTTTT
Found at i:24735 original size:209 final size:208
Alignment explanation
Indices: 24360--24861 Score: 604
Period size: 209 Copynumber: 2.4 Consensus size: 208
24350 CACCTTCCTA
* * * ** * * * *
24360 ATGAGATACAAAGAAGTAGCCCAAATCAA-CAGAGTGAAGCTCAATACGAATTAGACTTCAAACT
1 ATGAGATACAAAGAAGTAGACCAAATCAATGA-AGCGAAGCTCAATGTGAGTGAAACTTCAAACC
* * * * * *
24424 CTATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGATAAGA
65 CCATCTTCCTGATGAGATACAGAGAAATGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGA
** * * *
24489 TACAAAGAAGTAGACCAAATCCGCCTTTTTTATGAGATACAAAGAAGTGGATTAAATAAATGAAG
130 TACAAAGAAGTAGAAAAAATCCGCCTTCTTGATGAGATACAAAGAAGTGGATTAAATAAATAAAG
*
24554 CGGTCATCTTCTTG
195 CGATCATCTTCTTG
*
24568 ATGAGATATAAAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAACCC
1 ATGAGATACAAAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAA-CC
* *
24633 CCATCCTT-CTGATGAGATATAGAGAAATGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATGAG
65 CCAT-CTTCCTGATGAGATACAGAGAAATGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAG
* * ** * * *
24697 ATACAGAGAAGTGGAAAAAATTTGCGTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATAAA
129 ATACAAAGAAGTAGAAAAAATCCGCCTTCTTGATGAGATACAAAGAAGTGGATTAAATAAATAAA
*
24762 GCGATCGTCTTCTTG
194 GCGATCATCTTCTTG
* * *
24777 ATGAGATACAGAGAAATAGA-C----CAATGAAGCGAATCTCAATGTGAGTGAAACTTCAAACCC
1 ATGAGATACAAAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAACCC
*
24837 CATCTTCCTGATGAGAAACAGAGAA
66 CATCTTCCTGATGAGATACAGAGAA
24862 GTGGACCAAC
Statistics
Matches: 252, Mismatches: 38, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
202 3 0.01
203 22 0.09
204 35 0.14
208 52 0.21
209 137 0.54
210 3 0.01
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (208 bp):
ATGAGATACAAAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAACCC
CATCTTCCTGATGAGATACAGAGAAATGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGAT
ACAAAGAAGTAGAAAAAATCCGCCTTCTTGATGAGATACAAAGAAGTGGATTAAATAAATAAAGC
GATCATCTTCTTG
Found at i:25919 original size:11 final size:11
Alignment explanation
Indices: 25903--25934 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
25893 TTGAAACATT
25903 TAATAAATAAA
1 TAATAAATAAA
*
25914 TAATAAATACA
1 TAATAAATAAA
25925 TAATAAATAA
1 TAATAAATAA
25935 CAAAAAGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAATAAA
Done.