Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011315.1 Kokia drynarioides strain JFW-HI SEQ_126295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2484
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:559 original size:29 final size:29

Alignment explanation


    Indices: 504--560  Score: 69
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        494 TATTTGTCTC

                                 *       
        504 ATGTTACATTTTAATCAATTATATTTAAA
          1 ATGTTACATTTTAATCAATTACATTTAAA

                   *     *   *    *     
        533 ATGTTACGTTTTAGTCACTTACGTTTAA
          1 ATGTTACATTTTAATCAATTACATTTAA

        561 TTTTTGTTAC


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  29   23  1.00

ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47


Consensus pattern (29 bp):   
ATGTTACATTTTAATCAATTACATTTAAA

Found at i:1125 original size:3 final size:3

Alignment explanation


    Indices: 1119--1146  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       1109 ATCATCATCA

                                                 
       1119 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T

       1147 TGATGAGTGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TCT

Found at i:1475 original size:18 final size:18

Alignment explanation


    Indices: 1437--1474  Score: 58
    Period size: 19  Copynumber: 2.1  Consensus size: 18

       1427 TTATTTTCTT

                              
       1437 AATTTTTATTTTAACTAA
          1 AATTTTTATTTTAACTAA

                           *   
       1455 AATTATTTATTTTAAGTAA
          1 AATT-TTTATTTTAACTAA

             
       1474 A
          1 A

       1475 TAGGGTAATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    4  0.22
  19   14  0.78

ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53


Consensus pattern (18 bp):   
AATTTTTATTTTAACTAA
Done.