genome.fa.s11317.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011317.1 Kokia drynarioides strain JFW-HI SEQ_126297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169063

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4267--4300	9	3.6	9	85	14	50	47	0	2	50	1.16
4437--4479	20	2.2	20	83	8	52	27	4	4	62	1.35
10366--10413	21	2.3	21	85	0	60	31	27	6	35	1.82
12621--12649	5	5.8	5	100	0	58	20	0	0	79	0.74
23005--23384	206	1.8	205	87	7	559	36	6	6	51	1.53
29355--29429	24	2.9	25	75	18	66	56	0	0	44	0.99
29367--29426	24	2.4	25	81	10	70	55	0	0	45	0.99
46399--46739	41	8.4	41	81	5	352	29	20	30	19	1.97
46438--46729	161	1.8	161	86	1	424	29	20	30	18	1.97
46399--46746	82	4.3	82	81	2	389	29	19	30	19	1.97
48431--48678	59	4.2	59	77	7	238	33	1	27	36	1.67
48431--48678	29	8.5	29	80	7	220	33	1	27	36	1.67
50579--50686	17	6.4	17	80	6	121	52	2	0	43	1.22
50595--50686	6	16.0	6	70	15	61	53	3	1	42	1.24
50609--50686	11	6.8	12	72	21	53	55	3	0	41	1.18
50581--50635	29	1.9	28	85	3	74	50	1	1	45	1.22
50609--50658	23	2.2	23	89	7	75	54	4	0	42	1.19
53473--53606	43	3.0	42	79	13	144	29	21	23	26	1.99
53500--53595	47	2.0	48	90	6	151	32	20	21	25	1.98
53480--53612	42	3.0	41	78	15	140	28	21	24	24	1.99
56184--56244	31	1.9	33	83	12	83	55	1	1	40	1.19
58704--58782	39	2.0	39	85	5	104	31	15	10	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68479--68507	12	2.3	13	94	5	51	68	0	0	31	0.89
68479--68508	13	2.3	13	94	0	51	70	0	0	30	0.88
69825--69851	4	6.8	4	100	0	54	0	48	0	51	1.00
74976--75374	30	13.4	30	75	12	195	33	5	23	37	1.78
75006--75348	30	11.5	30	78	9	301	32	5	23	37	1.79
75024--75348	121	2.7	121	81	7	308	32	6	23	37	1.80
74986--75348	59	6.1	59	79	8	308	32	5	23	37	1.79
75150--75382	59	4.0	58	82	5	229	34	6	22	36	1.79
84259--84287	11	2.5	12	94	5	51	37	0	0	62	0.96
85086--85126	16	2.6	17	78	21	54	60	0	0	39	0.96
85199--85226	12	2.3	12	100	0	56	64	14	0	21	1.29
85390--85440	16	3.2	16	81	10	59	35	11	0	52	1.38
100535--100630	29	3.3	29	86	0	111	40	16	14	28	1.88
100555--100639	29	2.9	29	83	0	107	36	15	21	27	1.93
100529--100665	58	2.4	58	75	4	141	41	16	16	26	1.88
100737--100845	40	2.7	40	81	0	128	23	17	21	37	1.94
100780--100859	40	2.1	38	83	4	97	27	16	17	38	1.91
101400--101579	56	3.3	56	80	9	219	27	37	16	18	1.93
103028--103058	8	3.9	8	100	0	62	12	12	0	74	1.08
104180--104221	20	2.2	19	83	8	50	47	2	4	45	1.36
105553--105579	13	2.1	13	100	0	54	29	0	22	48	1.51
106516--106749	103	2.3	103	93	0	396	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109683--109753	34	2.1	34	100	0	142	43	11	14	30	1.80
110716--110801	38	2.3	38	97	0	163	40	13	10	34	1.80
114231--114289	22	2.6	23	81	8	84	18	13	10	57	1.64
114307--114372	22	2.9	23	72	4	71	25	15	6	53	1.65
114232--114372	22	6.3	22	68	10	70	20	15	9	54	1.68
124381--124405	1	25.0	1	100	0	50	100	0	0	0	0.00
129194--129257	17	3.7	17	80	2	74	42	3	3	51	1.33
129204--129257	6	9.3	6	75	15	51	44	1	1	51	1.22
129204--129257	11	4.7	12	73	17	51	44	1	1	51	1.22
130213--130559	29	11.8	30	77	6	291	35	24	4	36	1.75
130214--130589	59	6.4	59	82	7	379	35	24	3	36	1.74
130213--130568	30	12.1	30	77	11	290	35	24	4	35	1.75
135648--135674	13	2.1	13	100	0	54	22	22	22	33	1.97
142342--142867	208	2.5	205	90	2	786	36	19	23	20	1.95
142709--142984	118	2.3	119	91	1	437	35	22	21	20	1.96
143372--143429	17	3.5	16	84	9	80	37	1	1	58	1.18
144145--144198	3	18.0	3	80	0	63	59	1	3	35	1.26
144443--144485	17	2.5	17	81	11	52	34	11	11	41	1.78
145298--145423	30	4.2	30	80	8	157	37	28	3	30	1.73
146716--146776	10	6.6	9	83	10	61	37	3	3	55	1.32
146703--146775	10	7.5	10	73	11	53	35	2	2	58	1.26
147586--147619	13	2.6	13	95	0	59	26	0	8	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157504--157550	20	2.3	20	85	0	58	36	8	2	53	1.44
159520--159590	30	2.4	30	81	9	83	32	16	8	42	1.79
159541--159652	59	1.9	57	80	10	129	25	16	12	46	1.81
164323--164365	20	2.2	20	86	0	59	48	2	0	48	1.14
164316--164376	28	2.1	28	88	8	88	45	3	0	50	1.17
167985--168104	58	2.1	58	90	6	190	32	0	20	47	1.50

Tables:   1

The End!