Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011319.1 Kokia drynarioides strain JFW-HI SEQ_126299, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28


Found at i:646 original size:45 final size:45

Alignment explanation


    Indices: 584--719  Score: 166
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        574 GCATAGCTCA

                                                       * 
        584 TCAAGCCAAGGATATCAGTCTCAGTTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGTCTCAGTTTGACGAGCCACCGCAATAC

                              *    *         *           
        629 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGTCACCGCAATAC
          1 TCAAGCCAAGGATATCAGTCTCAGTTTGACGAGCCACCGCAATAC

                 **        *      *              *   *    
        674 TCAAGGGAAGGATATTA-TGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAGT-CTCAGTTTGACGAGCCACCGCAATAC

             
        719 T
          1 T

        720 TAAAGTGTAA


Statistics
Matches: 77,  Mismatches: 13, Indels: 2
        0.84            0.14        0.02

Matches are distributed among these distances:
  45   77  1.00

ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGTCTCAGTTTGACGAGCCACCGCAATAC
Done.