Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011323.1 Kokia drynarioides strain JFW-HI SEQ_126303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3050
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:676 original size:45 final size:45

Alignment explanation


    Indices: 612--748  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        602 GCGTAGCTCA

                                                         
        612 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                                *  *                     
        657 TCAAGCCAAGGATATCAGCCCCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **           *  *           *  *   *    
        702 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGTCATCGCGATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
        747 TC
          1 TC

        749 TATTCCTCCC


Statistics
Matches: 81,  Mismatches: 11, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   81  1.00

ACGTcount: A:0.31, C:0.28, G:0.23, T:0.19


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Done.