Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011327.1 Kokia drynarioides strain JFW-HI SEQ_126307, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4353
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.29

Warning! 301 characters in sequence are not A, C, G, or T


Found at i:4015 original size:36 final size:36

Alignment explanation


    Indices: 3968--4040  Score: 146
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       3958 AAGTGAGATA

                                                
       3968 GAATTAGAAGTTTGAAGACTTTTTGGAACATAAAAT
          1 GAATTAGAAGTTTGAAGACTTTTTGGAACATAAAAT

                                                
       4004 GAATTAGAAGTTTGAAGACTTTTTGGAACATAAAAT
          1 GAATTAGAAGTTTGAAGACTTTTTGGAACATAAAAT

             
       4040 G
          1 G

       4041 TAAAATAACC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33


Consensus pattern (36 bp):   
GAATTAGAAGTTTGAAGACTTTTTGGAACATAAAAT
Done.