Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011329.1 Kokia drynarioides strain JFW-HI SEQ_126309, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28878
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:1011 original size:17 final size:17
Alignment explanation
Indices: 991--1073 Score: 87
Period size: 17 Copynumber: 4.9 Consensus size: 17
981 AAATAAATTT
*
991 TAAAATTAAATTTATAA
1 TAAATTTAAATTTATAA
*
1008 TAAATTTAAATTTA-AGC
1 TAAATTTAAATTTATA-A
1025 TAAATTTAAATTTATAA
1 TAAATTTAAATTTATAA
* * * *
1042 TAAACTCAATTTTAAAA
1 TAAATTTAAATTTATAA
*
1059 TAAATTTAAGTTTAT
1 TAAATTTAAATTTAT
1074 TGGGCCCAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
16 1 0.02
17 51 0.96
18 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (17 bp):
TAAATTTAAATTTATAA
Found at i:1036 original size:34 final size:34
Alignment explanation
Indices: 991--1073 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
981 AAATAAATTT
* * * **
991 TAAAATTAAATTTATAATAAATTTAAATTTAAGC
1 TAAATTTAAATTTATAATAAACTCAAATTTAAAA
*
1025 TAAATTTAAATTTATAATAAACTCAATTTTAAAA
1 TAAATTTAAATTTATAATAAACTCAAATTTAAAA
*
1059 TAAATTTAAGTTTAT
1 TAAATTTAAATTTAT
1074 TGGGCCCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (34 bp):
TAAATTTAAATTTATAATAAACTCAAATTTAAAA
Found at i:1651 original size:204 final size:204
Alignment explanation
Indices: 1304--1949 Score: 1093
Period size: 204 Copynumber: 3.2 Consensus size: 204
1294 TTACCGATTT
* * *
1304 GGTCTTCTTCTCAGTATCTCATTAGGAAGATGA-CTACAT--C-GTTTGTTTCAATTCGCTTCTC
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATC-ACATCGCTGTTTGTTTCAATTCGCTCCTC
*
1365 TATATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
65 TGTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
* * * *
1430 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGGAGCTTGGGTTCGAAGATTTTGCTCGCTTTGA
130 CTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGA
1495 GCCTCGTTTG
195 GCCTCGTTTG
1505 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTGTTTCAATTCGCTCCTCT
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTGTTTCAATTCGCTCCTCT
1570 GTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTAC
66 GTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTAC
*
1635 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGAG
131 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAG
1700 CCTCGTTTG
196 CCTCGTTTG
* *
1709 GGTCTTGTTCTCAGTGTCTCATCAGGAAGATTATCACATCGCTGTTTGTTTCAATTCGCTCCTCT
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTGTTTCAATTCGCTCCTCT
* ** * *
1774 GTATCTCATCAAGAAGATGAATTTGGTTCACTTCTTAGTATCTCATCAAGAAGCTAACCTTTTAC
66 GTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTAC
*
1839 TGCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAG
131 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAG
1904 CCTCGTTTG
196 CCTCGTTTG
*
1913 GGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATCAC
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCAC
1950 GTCGTTTGTG
Statistics
Matches: 421, Mismatches: 20, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
201 35 0.08
202 1 0.00
203 1 0.00
204 384 0.91
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (204 bp):
GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTGTTTCAATTCGCTCCTCT
GTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTAC
TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAG
CCTCGTTTG
Found at i:13916 original size:30 final size:30
Alignment explanation
Indices: 13882--14248 Score: 201
Period size: 30 Copynumber: 12.5 Consensus size: 30
13872 TAAAATAGTA
13882 ATTTTTGGATA-TTTCGGGGTTAAAAATGGG
1 ATTTTTGGA-AGTTTCGGGGTTAAAAATGGG
* *
13912 ATTTTTGGAAGTTT-AGGG-T-AAAATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* *
13940 ATTTTTAGAAGTTT-TGGGTTCAAAAATGGG
1 ATTTTTGGAAGTTTCGGGGTT-AAAAATGGG
**
13970 ATTTTTGGAAG-TTCGGGG-T-AAAATGCTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATG-GG
* * *
13998 ATTTTTAGAAGTTTCGGGGTCAAAAATAGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* * *
14028 ATTTTTTGG-AGTTTAGAGG-T-AAAATGGTA
1 A-TTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* * * * *
14057 ATTTTTAGAAGGTTCGAGGTCAAACATGGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* * *
14087 ATTTTTGGGAGTTT-GGGGGT-AAAATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* * * * * *
14116 ATTTTTAGAAGGTTAGAGGTCAAACATGGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* ** *
14146 ATTTTTGGAAGTTTAGGGG-T-AGGATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* * * *
14175 ATTTTGGGAAGGTTGGGGGTCAAAAATGGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* *
14205 ATTTTTGGAAG-TTCGGGGGT-AAAATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
14234 ATTTTTGGATAGTTT
1 ATTTTTGGA-AGTTT
14249 AGGGACTCCG
Statistics
Matches: 252, Mismatches: 61, Indels: 47
0.70 0.17 0.13
Matches are distributed among these distances:
27 13 0.05
28 57 0.23
29 69 0.27
30 76 0.30
31 37 0.15
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.37
Consensus pattern (30 bp):
ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
Found at i:13942 original size:116 final size:116
Alignment explanation
Indices: 13810--14248 Score: 316
Period size: 118 Copynumber: 3.7 Consensus size: 116
13800 AAACATTCAG
* *
13810 GGGTAAAAATGGTAATTTTGA-AAGCTTCGAGGTCGAAAA-CGGAGTCTTCGAACATCCGGGAGT
1 GGGT-AAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTTCGAA-ATCCGGG-GT
* * *
13873 AAAATAG-TAATTTTTGGATA-TTTCGGGGTTAAAAATGGGA-TTTTTGGAAGTTTA
63 AAAAT-GCTAATTTTTAGA-AGTTTCGGGGTCAAAAATAGGATTTTTTGG-AGTTTA
* * * * * * * *
13927 GGGTAAAATGGTAATTTTTAGAAGTTTTG-GGTTCAAAAATGGGATTTTTGGAAGTTCGGGGTAA
1 GGGTAAAATGGTAATTTTTAGAAGCTTCGAGG-TCAAAAATCGGAGTCTTCGAAATCCGGGGTAA
13991 AATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGGAGTTTA
65 AATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGGAGTTTA
* * * * * * ** **
14043 GAGGTAAAATGGTAATTTTTAGAAGGTTCGAGGTCAAACATGGGATTTTTGGGAGTTTGGGGGTA
1 G-GGTAAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTT-CGAAATCCGGGGTA
* * * * * *
14108 AAATGGTAATTTTTAGAAGGTTAGAGGTCAAACATGGGA-TTTTTGGAAGTTTA
64 AAATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGG-AGTTTA
** ** * * * * * * * * *
14161 GGGGTAGGATGGTAATTTTGGGAAGGTTGGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTA
1 -GGGTAAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTTCGAA-ATCCGGGGTA
* *
14226 AAATGGTAATTTTTGGATAGTTT
64 AAATGCTAATTTTTAGA-AGTTT
14249 AGGGACTCCG
Statistics
Matches: 273, Mismatches: 36, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
115 2 0.01
116 59 0.22
117 80 0.29
118 127 0.47
119 5 0.02
ACGTcount: A:0.30, C:0.05, G:0.31, T:0.34
Consensus pattern (116 bp):
GGGTAAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTTCGAAATCCGGGGTAAA
ATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGGAGTTTA
Found at i:14063 original size:59 final size:59
Alignment explanation
Indices: 13871--14248 Score: 458
Period size: 59 Copynumber: 6.4 Consensus size: 59
13861 ACATCCGGGA
* * *
13871 GTAAAATAGTAATTTTTGGATA-TTTCGGGGTTAAAAATGGGATTTTTGGAAGTTTA-GG
1 GTAAAATGGTAATTTTTAGA-AGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
* * *
13929 GTAAAATGGTAATTTTTAGAAGTTTTGGGTTCAAAAATGGGATTTTTGGAAG-TTCGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
* * *
13987 GTAAAATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGG-AGTTTAGAG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGA-TTTTTGGAAGTTTAGGG
* * * * *
14046 GTAAAATGGTAATTTTTAGAAGGTTCGAGGTCAAACATGGGATTTTTGGGAGTTTGGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
* * * *
14105 GTAAAATGGTAATTTTTAGAAGGTTAGAGGTCAAACATGGGATTTTTGGAAGTTTAGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
** ** * * **
14164 GTAGGATGGTAATTTTGGGAAGGTTGGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
*
14223 GTAAAATGGTAATTTTTGGATAGTTT
1 GTAAAATGGTAATTTTTAGA-AGTTT
14249 AGGGACTCCG
Statistics
Matches: 279, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
57 3 0.01
58 94 0.34
59 178 0.64
60 4 0.01
ACGTcount: A:0.29, C:0.03, G:0.31, T:0.36
Consensus pattern (59 bp):
GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
Found at i:15278 original size:204 final size:204
Alignment explanation
Indices: 14923--15301 Score: 668
Period size: 204 Copynumber: 1.9 Consensus size: 204
14913 NNNNNNNNNN
* *
14923 TATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTACT
1 TATCTCATCAAGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAAGAAGCTAACCTTTTACT
* *
14988 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGAGC
66 GCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAGC
* * *
15053 CTCGTTTGGGTCTTGTTCTCAGTGTCTCATCAGGAAGATTATCACATCGCTGTTTGTTTCAATTC
131 CTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATCACATCGCTGTTTGTTTCAATTC
15118 GCTCCTCTG
196 GCTCCTCTG
** *
15127 TATCTCATCAAGAAGATGAATTTGGTTCACTTCTTAGTATCTCATCAAGAAGCTAACCTTTTACT
1 TATCTCATCAAGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAAGAAGCTAACCTTTTACT
15192 GCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAGC
66 GCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAGC
15257 CTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATCAC
131 CTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATCAC
15302 GTCGTTTGTG
Statistics
Matches: 165, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
204 165 1.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (204 bp):
TATCTCATCAAGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAAGAAGCTAACCTTTTACT
GCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAGC
CTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATCACATCGCTGTTTGTTTCAATTC
GCTCCTCTG
Found at i:27268 original size:30 final size:30
Alignment explanation
Indices: 27234--27600 Score: 201
Period size: 30 Copynumber: 12.5 Consensus size: 30
27224 TAAAATAGTA
27234 ATTTTTGGATA-TTTCGGGGTTAAAAATGGG
1 ATTTTTGGA-AGTTTCGGGGTTAAAAATGGG
* *
27264 ATTTTTGGAAGTTT-AGGG-T-AAAATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* *
27292 ATTTTTAGAAGTTT-TGGGTTCAAAAATGGG
1 ATTTTTGGAAGTTTCGGGGTT-AAAAATGGG
**
27322 ATTTTTGGAAG-TTCGGGG-T-AAAATGCTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATG-GG
* * *
27350 ATTTTTAGAAGTTTCGGGGTCAAAAATAGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* * *
27380 ATTTTTTGG-AGTTTAGAGG-T-AAAATGGTA
1 A-TTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* * * * *
27409 ATTTTTAGAAGGTTCGAGGTCAAACATGGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* * *
27439 ATTTTTGGGAGTTT-GGGGGT-AAAATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* * * * * *
27468 ATTTTTAGAAGGTTAGAGGTCAAACATGGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* ** *
27498 ATTTTTGGAAGTTTAGGGG-T-AGGATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
* * * *
27527 ATTTTGGGAAGGTTGGGGGTCAAAAATGGG
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
* *
27557 ATTTTTGGAAG-TTCGGGGGT-AAAATGGTA
1 ATTTTTGGAAGTTTCGGGGTTAAAAATGG-G
27586 ATTTTTGGATAGTTT
1 ATTTTTGGA-AGTTT
27601 AGGGACTCCG
Statistics
Matches: 252, Mismatches: 61, Indels: 47
0.70 0.17 0.13
Matches are distributed among these distances:
27 13 0.05
28 57 0.23
29 69 0.27
30 76 0.30
31 37 0.15
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.37
Consensus pattern (30 bp):
ATTTTTGGAAGTTTCGGGGTTAAAAATGGG
Found at i:27294 original size:116 final size:116
Alignment explanation
Indices: 27162--27600 Score: 316
Period size: 118 Copynumber: 3.7 Consensus size: 116
27152 AAACATTCAG
* *
27162 GGGTAAAAATGGTAATTTTGA-AAGCTTCGAGGTCGAAAA-CGGAGTCTTCGAACATCCGGGAGT
1 GGGT-AAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTTCGAA-ATCCGGG-GT
* * *
27225 AAAATAG-TAATTTTTGGATA-TTTCGGGGTTAAAAATGGGA-TTTTTGGAAGTTTA
63 AAAAT-GCTAATTTTTAGA-AGTTTCGGGGTCAAAAATAGGATTTTTTGG-AGTTTA
* * * * * * * *
27279 GGGTAAAATGGTAATTTTTAGAAGTTTTG-GGTTCAAAAATGGGATTTTTGGAAGTTCGGGGTAA
1 GGGTAAAATGGTAATTTTTAGAAGCTTCGAGG-TCAAAAATCGGAGTCTTCGAAATCCGGGGTAA
27343 AATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGGAGTTTA
65 AATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGGAGTTTA
* * * * * * ** **
27395 GAGGTAAAATGGTAATTTTTAGAAGGTTCGAGGTCAAACATGGGATTTTTGGGAGTTTGGGGGTA
1 G-GGTAAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTT-CGAAATCCGGGGTA
* * * * * *
27460 AAATGGTAATTTTTAGAAGGTTAGAGGTCAAACATGGGA-TTTTTGGAAGTTTA
64 AAATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGG-AGTTTA
** ** * * * * * * * * *
27513 GGGGTAGGATGGTAATTTTGGGAAGGTTGGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTA
1 -GGGTAAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTTCGAA-ATCCGGGGTA
* *
27578 AAATGGTAATTTTTGGATAGTTT
64 AAATGCTAATTTTTAGA-AGTTT
27601 AGGGACTCCG
Statistics
Matches: 273, Mismatches: 36, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
115 2 0.01
116 59 0.22
117 80 0.29
118 127 0.47
119 5 0.02
ACGTcount: A:0.30, C:0.05, G:0.31, T:0.34
Consensus pattern (116 bp):
GGGTAAAATGGTAATTTTTAGAAGCTTCGAGGTCAAAAATCGGAGTCTTCGAAATCCGGGGTAAA
ATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGGAGTTTA
Found at i:27415 original size:59 final size:59
Alignment explanation
Indices: 27223--27600 Score: 458
Period size: 59 Copynumber: 6.4 Consensus size: 59
27213 ACATCCGGGA
* * *
27223 GTAAAATAGTAATTTTTGGATA-TTTCGGGGTTAAAAATGGGATTTTTGGAAGTTTA-GG
1 GTAAAATGGTAATTTTTAGA-AGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
* * *
27281 GTAAAATGGTAATTTTTAGAAGTTTTGGGTTCAAAAATGGGATTTTTGGAAG-TTCGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
* * *
27339 GTAAAATGCTAATTTTTAGAAGTTTCGGGGTCAAAAATAGGATTTTTTGG-AGTTTAGAG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGA-TTTTTGGAAGTTTAGGG
* * * * *
27398 GTAAAATGGTAATTTTTAGAAGGTTCGAGGTCAAACATGGGATTTTTGGGAGTTTGGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
* * * *
27457 GTAAAATGGTAATTTTTAGAAGGTTAGAGGTCAAACATGGGATTTTTGGAAGTTTAGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
** ** * * **
27516 GTAGGATGGTAATTTTGGGAAGGTTGGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGG
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
*
27575 GTAAAATGGTAATTTTTGGATAGTTT
1 GTAAAATGGTAATTTTTAGA-AGTTT
27601 AGGGACTCCG
Statistics
Matches: 279, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
57 3 0.01
58 94 0.34
59 178 0.64
60 4 0.01
ACGTcount: A:0.29, C:0.03, G:0.31, T:0.36
Consensus pattern (59 bp):
GTAAAATGGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGG
Done.