Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011331.1 Kokia drynarioides strain JFW-HI SEQ_126311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12764
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:7189 original size:21 final size:21

Alignment explanation


    Indices: 7165--7211  Score: 76
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       7155 AGGTATACAT

                                 
       7165 ATGTTCATGCATCTCATTTTC
          1 ATGTTCATGCATCTCATTTTC

                     *           
       7186 ATGTTCATGTATCTCATTTTC
          1 ATGTTCATGCATCTCATTTTC

            *    
       7207 TTGTT
          1 ATGTT

       7212 TTTGTTTTTA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.17, C:0.19, G:0.11, T:0.53


Consensus pattern (21 bp):   
ATGTTCATGCATCTCATTTTC

Found at i:7521 original size:13 final size:13

Alignment explanation


    Indices: 7505--7531  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       7495 TCAGAGCCTT

                         
       7505 GTGTACATATGGA
          1 GTGTACATATGGA

                         
       7518 GTGTACATATGGA
          1 GTGTACATATGGA

             
       7531 G
          1 G

       7532 CATTTTTGGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30


Consensus pattern (13 bp):   
GTGTACATATGGA

Found at i:7991 original size:56 final size:56

Alignment explanation


    Indices: 7929--8041  Score: 199
    Period size: 56  Copynumber: 2.0  Consensus size: 56

       7919 CAAGTTAAAG

                                                             *      
       7929 AGATGCTCAAATCTTGTTGGTTGACTTACATTACAAAAGCCTCATGTACTGTATCT
          1 AGATGCTCAAATCTTGTTGGTTGACTTACATTACAAAAGCCTCATGTACGGTATCT

                                              * *                   
       7985 AGATGCTCAAATCTTGTTGGTTGACTTACATTACCAGAGCCTCATGTACGGTATCT
          1 AGATGCTCAAATCTTGTTGGTTGACTTACATTACAAAAGCCTCATGTACGGTATCT

             
       8041 A
          1 A

       8042 CATTGCAGAG


Statistics
Matches: 54,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  56   54  1.00

ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35


Consensus pattern (56 bp):   
AGATGCTCAAATCTTGTTGGTTGACTTACATTACAAAAGCCTCATGTACGGTATCT
Done.