genome.fa.s11332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011332.1 Kokia drynarioides strain JFW-HI SEQ_126312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123941

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10138--10191	24	2.2	24	83	6	74	72	12	5	9	1.27
10179--10265	19	4.3	19	74	15	59	66	20	5	6	1.36
10205--10264	19	2.9	21	85	12	88	66	21	6	5	1.34
12302--12375	21	3.7	20	67	10	53	17	2	52	27	1.58
24246--24296	27	1.9	26	92	4	84	27	17	9	45	1.80
27648--27675	4	7.0	4	100	0	56	25	0	0	75	0.81
29260--29295	10	3.6	10	88	0	54	38	0	0	61	0.96
29258--29302	20	2.4	19	81	7	56	46	0	0	53	1.00
31071--31107	18	2.1	18	94	0	65	35	5	8	51	1.55
31187--31227	18	2.3	18	82	0	55	58	2	0	39	1.11
34884--34917	14	2.4	14	90	0	50	23	5	5	64	1.38
35665--35739	37	2.0	36	82	10	89	61	4	2	32	1.28
43805--45010	208	5.8	208	88	0	1630	22	21	17	38	1.93
45033--45251	39	5.6	39	78	2	251	28	16	30	24	1.97
45033--45251	117	1.9	117	88	1	332	28	16	30	24	1.97
46658--46709	26	2.1	26	86	10	74	7	13	0	78	0.94
52211--52365	30	5.2	30	77	9	120	41	3	20	34	1.69
52223--52365	60	2.4	59	78	12	166	41	2	19	35	1.66
57354--57379	6	4.3	6	100	0	52	19	34	0	46	1.50
74821--74870	21	2.6	19	87	9	66	28	26	20	26	1.99
74830--74870	21	2.0	21	95	0	73	31	26	19	21	1.97
76884--76909	9	2.9	9	100	0	52	92	0	7	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79143--79167	7	3.6	7	100	0	50	60	0	0	40	0.97
81805--81902	33	2.9	34	73	14	103	27	9	18	44	1.80
81794--81902	34	3.2	34	73	12	107	28	9	18	44	1.80
84336--84426	37	2.5	37	88	0	137	14	20	28	36	1.92
84357--84447	21	4.6	21	70	22	79	13	20	30	35	1.91
84363--84484	58	2.1	58	90	0	190	13	20	31	34	1.91
84421--84574	74	2.1	74	85	0	209	11	20	33	34	1.89
84422--84574	37	4.1	36	80	5	171	11	20	33	33	1.89
95763--96015	111	2.3	110	82	3	303	16	18	27	36	1.93
95764--96050	37	7.8	35	77	9	211	16	18	28	36	1.92
95763--96046	111	2.6	111	80	2	259	16	18	28	36	1.93
96768--96925	71	2.2	71	93	1	273	28	11	26	33	1.91
97372--97441	34	2.1	34	86	5	97	34	10	14	41	1.79
98776--98898	45	2.7	45	87	0	174	29	21	13	34	1.92
98776--98912	45	3.0	45	85	0	139	29	22	13	35	1.92
99487--99543	23	2.5	23	91	0	96	28	26	22	22	1.99
105967--106030	18	3.7	17	78	17	62	28	6	0	65	1.16
106329--106576	124	2.0	124	97	0	469	31	26	12	29	1.93
111996--112041	23	1.9	23	82	8	56	23	43	2	30	1.66
118241--118353	29	3.9	29	80	0	136	43	15	16	24	1.87
118241--118353	58	1.9	58	85	0	154	43	15	16	24	1.87
122643--122673	16	1.9	16	100	0	62	38	25	22	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122658--122764	23	4.6	23	83	10	128	39	22	24	14	1.91
122658--122764	48	2.3	46	85	7	137	39	22	24	14	1.91
122818--122865	24	1.9	26	84	16	66	31	22	0	45	1.53

Tables:   1

The End!