Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011340.1 Kokia drynarioides strain JFW-HI SEQ_126320, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2390
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32


Found at i:1898 original size:40 final size:40

Alignment explanation


    Indices: 1852--1930  Score: 158
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1842 TTTAGTAAAA

                                                    
       1852 CAGTTTGGACAGAACAGAGGATTAACTTCAAAAATTCACC
          1 CAGTTTGGACAGAACAGAGGATTAACTTCAAAAATTCACC

                                                   
       1892 CAGTTTGGACAGAACAGAGGATTAACTTCAAAAATTCAC
          1 CAGTTTGGACAGAACAGAGGATTAACTTCAAAAATTCAC

       1931 AAAAAATTTT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.41, C:0.19, G:0.18, T:0.23


Consensus pattern (40 bp):   
CAGTTTGGACAGAACAGAGGATTAACTTCAAAAATTCACC
Done.