genome.fa.s11346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011346.1 Kokia drynarioides strain JFW-HI SEQ_126326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114985

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7655--7681	4	6.8	4	100	0	54	22	0	0	77	0.76
9571--9605	15	2.4	15	85	4	54	42	0	0	57	0.99
23699--23749	3	17.7	3	84	8	70	0	29	0	70	0.87
24775--24799	2	12.5	2	100	0	50	52	0	0	48	1.00
25345--25389	16	2.8	16	83	10	56	75	0	6	17	1.01
25330--25389	22	2.8	22	87	7	79	76	1	6	15	1.06
25985--26029	19	2.4	19	81	7	56	37	0	2	60	1.09
28576--28654	30	2.6	30	77	20	92	44	0	2	53	1.14
33746--34010	131	2.0	132	98	0	514	29	19	9	42	1.81
37714--37825	59	1.9	59	83	7	149	24	13	10	51	1.72
37730--37850	58	2.1	59	80	10	133	23	13	12	50	1.75
39146--39196	25	2.1	24	85	3	66	45	15	25	13	1.83
42171--42231	28	2.2	27	75	18	63	36	0	6	57	1.25
44895--44942	22	2.1	23	88	3	71	66	0	8	25	1.19
45473--45563	45	2.0	45	100	0	182	25	35	2	37	1.68
46611--47056	224	2.0	224	95	0	793	44	9	15	30	1.79
49179--49605	220	1.9	221	89	1	660	27	18	23	29	1.98
53759--53800	17	2.5	17	76	3	50	45	42	4	7	1.52
54287--54412	44	2.9	44	95	0	225	38	20	14	26	1.91
57179--57213	9	3.7	10	92	7	56	42	5	0	51	1.25
57179--57217	9	4.3	9	87	9	53	38	5	0	56	1.22
73297--73472	10	19.0	9	70	16	87	62	1	4	31	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73297--73357	16	3.5	17	78	17	54	60	0	1	37	1.07
73331--73421	29	3.1	29	75	13	80	63	1	4	30	1.21
73406--73469	19	3.3	19	75	18	53	65	3	6	25	1.31
74328--74356	14	2.0	15	93	6	51	55	3	0	41	1.17
74365--74399	18	2.0	18	94	5	63	57	2	5	34	1.37
74368--74408	18	2.3	18	87	8	57	56	4	4	34	1.42
76749--76802	23	2.2	24	81	12	58	55	11	5	27	1.57
76902--76947	23	2.0	23	82	0	56	30	2	10	56	1.46
77783--77815	13	2.3	15	90	10	52	36	0	6	57	1.23
79819--79848	2	15.0	2	100	0	60	50	0	0	50	1.00
87736--87789	28	1.9	28	88	7	83	38	3	18	38	1.69
87949--88012	25	2.6	25	97	2	121	54	3	3	39	1.32
88015--88073	29	2.0	29	96	0	109	52	8	20	18	1.71
90328--90394	24	2.7	25	75	9	66	44	5	7	41	1.57
92593--92963	30	12.4	29	77	7	273	35	2	24	36	1.71
95922--96075	25	6.5	24	76	19	110	13	21	20	44	1.85
95932--95982	23	2.2	23	89	0	75	17	17	21	43	1.88
95944--96022	23	3.5	22	86	5	97	12	17	21	48	1.80
97245--97353	23	4.8	22	74	15	62	44	20	22	11	1.84
97292--97384	23	4.0	23	74	10	82	47	22	18	11	1.81
97317--97396	23	3.4	25	72	16	64	47	20	18	13	1.82
104155--105120	216	4.5	213	85	5	1169	27	25	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108883--108933	15	3.5	15	72	5	50	27	5	9	56	1.54
112091--112126	17	2.1	17	94	0	63	80	0	19	0	0.71
112121--112150	16	1.9	15	93	6	51	50	0	50	0	1.00
112499--112541	21	2.1	21	91	4	70	27	0	11	60	1.31
113006--113055	16	3.2	16	73	21	61	60	4	0	36	1.16
113087--113181	30	3.2	29	70	14	86	37	4	11	46	1.60
114413--114486	4	17.8	4	80	13	78	1	28	0	70	0.96
114400--114486	17	5.3	16	78	13	79	2	27	0	70	1.00
114413--114485	13	5.8	13	81	12	89	1	27	0	71	0.95

Tables:   1

The End!