Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011361.1 Kokia drynarioides strain JFW-HI SEQ_126342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16963
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:4135 original size:21 final size:21

Alignment explanation


    Indices: 4111--4163  Score: 106
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       4101 TTGTGTTAGC

                                 
       4111 TCTACCGATACAAGTCATGCA
          1 TCTACCGATACAAGTCATGCA

                                 
       4132 TCTACCGATACAAGTCATGCA
          1 TCTACCGATACAAGTCATGCA

                       
       4153 TCTACCGATAC
          1 TCTACCGATAC

       4164 CAAAAACTCC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25


Consensus pattern (21 bp):   
TCTACCGATACAAGTCATGCA

Found at i:5994 original size:21 final size:22

Alignment explanation


    Indices: 5961--6003  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       5951 ACTTTCATCA

                                  
       5961 TTAAGCTTAATT-AACCTATTT
          1 TTAAGCTTAATTAAACCTATTT

                *   *             
       5982 TTAATCTTGATTAAACCTATTT
          1 TTAAGCTTAATTAAACCTATTT

       6004 ATACTTAATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.33, C:0.14, G:0.05, T:0.49


Consensus pattern (22 bp):   
TTAAGCTTAATTAAACCTATTT

Found at i:13281 original size:21 final size:22

Alignment explanation


    Indices: 13257--13299  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 22

      13247 ACTTTCATCA

                                  
      13257 TTAAGCTTAATT-AACCCATTT
          1 TTAAGCTTAATTAAACCCATTT

                *   *             
      13278 TTAATCTTGATTAAACCCATTT
          1 TTAAGCTTAATTAAACCCATTT

      13300 ATACTTAATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44


Consensus pattern (22 bp):   
TTAAGCTTAATTAAACCCATTT
Done.