Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011363.1 Kokia drynarioides strain JFW-HI SEQ_126344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8088
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34


Found at i:4823 original size:13 final size:12

Alignment explanation


    Indices: 4795--4842  Score: 51
    Period size: 13  Copynumber: 3.8  Consensus size: 12

       4785 TTAATTGCTC

                  *      
       4795 AAGGTAGGAAATT
          1 AAGGTATGAAA-T

                         
       4808 AAGGTATAGAAAT
          1 AAGGTAT-GAAAT

               *         
       4821 AAGATATGAAAAT
          1 AAGGTATG-AAAT

                     
       4834 AAGGTATGA
          1 AAGGTATGA

       4843 GATTCTCTAC


Statistics
Matches: 30,  Mismatches: 3, Indels: 5
        0.79            0.08        0.13

Matches are distributed among these distances:
  12    2  0.07
  13   24  0.80
  14    4  0.13

ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23


Consensus pattern (12 bp):   
AAGGTATGAAAT
Done.