genome.fa.s11366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011366.1 Kokia drynarioides strain JFW-HI SEQ_126347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227116

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20190--20483	147	2.0	147	99	0	579	21	11	29	37	1.89
31889--31920	6	5.3	6	100	0	64	34	0	15	50	1.45
32780--32815	15	2.4	15	90	0	54	30	13	5	50	1.65
33115--33155	22	2.0	20	90	9	64	31	4	19	43	1.72
35440--35487	13	3.6	13	77	2	51	35	2	0	62	1.07
46069--46150	21	3.7	23	77	11	98	37	1	6	54	1.33
46654--46706	26	2.1	25	83	10	72	35	7	3	52	1.48
46767--46800	15	2.2	15	89	5	50	32	2	0	64	1.08
48690--48716	2	13.5	2	100	0	54	51	0	48	0	1.00
58750--59078	176	1.9	177	87	5	488	44	8	11	36	1.71
64120--64145	2	13.0	2	100	0	52	50	0	0	50	1.00
72381--72440	31	1.9	31	83	12	79	33	0	8	58	1.28
72458--72497	14	2.5	17	76	19	50	60	2	0	37	1.11
77256--77298	22	2.0	22	81	9	52	46	2	4	46	1.36
89312--89346	16	2.2	16	89	0	52	5	5	0	88	0.63
92537--92581	2	22.5	2	95	0	81	46	0	2	51	1.13
93976--94035	21	2.9	21	74	18	61	36	5	5	53	1.45
96611--96689	39	2.0	39	100	0	158	29	17	15	37	1.90
98036--98224	61	3.2	60	86	2	254	23	16	13	46	1.83
98036--98197	31	5.4	30	67	16	102	23	17	12	45	1.83
98433--98561	31	4.3	30	73	14	106	44	11	17	26	1.82
98450--98561	31	3.7	31	73	16	119	45	10	18	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98374--98561	89	2.1	89	81	5	211	46	12	17	23	1.82
99725--99759	18	1.9	18	88	0	52	20	2	2	74	1.08
99725--99767	18	2.5	16	79	17	50	18	2	4	74	1.10
100116--100157	9	4.7	9	80	8	50	7	2	9	80	0.97
113038--113070	3	11.0	3	93	0	57	63	33	3	0	1.10
115581--115653	36	2.1	35	84	7	94	45	5	2	46	1.40
116723--116788	28	2.4	28	100	0	132	25	31	21	21	1.98
118857--118894	14	2.6	15	79	8	51	34	0	18	47	1.49
119212--119303	45	2.0	45	93	0	157	20	17	30	31	1.96
119373--119408	12	3.0	12	91	0	54	5	33	22	38	1.77
119975--120092	58	2.0	58	100	0	236	28	26	20	24	1.99
121261--121292	14	2.3	14	100	0	64	21	12	6	59	1.55
121315--121363	16	3.2	16	72	21	50	32	0	6	61	1.21
122020--122072	16	3.1	16	84	13	54	0	33	0	66	0.92
125346--125384	3	13.0	3	100	0	78	66	0	33	0	0.92
127394--127472	38	2.1	38	100	0	158	45	12	18	22	1.84
130062--130158	39	2.5	39	86	0	122	41	17	16	24	1.89
130691--130771	30	2.7	29	86	7	108	48	0	32	19	1.50
130864--130902	21	1.9	21	89	5	62	46	0	28	25	1.53
145697--145759	32	2.0	32	87	3	92	30	11	7	50	1.66
145712--145789	32	2.5	32	83	6	81	35	6	2	55	1.39
149446--149477	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149842--149878	13	2.8	13	91	0	56	35	0	0	64	0.94
151323--151359	17	2.1	18	85	14	51	43	2	0	54	1.14
151428--151458	8	3.8	8	91	8	53	51	0	0	48	1.00
157021--157060	19	2.0	21	85	9	57	67	2	0	30	1.04
160332--160365	17	2.0	17	88	0	50	58	0	2	38	1.13
160961--160986	7	3.7	7	100	0	52	0	0	53	46	1.00
160956--160991	14	2.7	13	83	8	54	5	0	44	50	1.25
161088--161134	20	2.1	24	85	14	66	68	0	6	25	1.13
168273--168321	16	3.0	16	81	3	53	55	12	0	32	1.37
168645--168684	19	2.1	19	85	0	53	62	5	12	20	1.48
169426--169495	31	2.3	31	80	9	81	44	2	5	47	1.41
177568--177622	21	2.7	20	78	10	58	47	0	3	49	1.19
177828--177853	2	13.0	2	100	0	52	50	0	0	50	1.00
178228--178290	30	2.1	30	90	0	99	57	15	3	23	1.53
181547--181615	23	3.0	23	75	12	70	69	24	2	2	1.16
181589--181622	11	2.9	12	86	8	52	67	32	0	0	0.91
181595--181651	30	2.0	28	89	6	87	66	26	3	3	1.24
181594--181684	40	2.2	40	86	1	119	68	25	3	3	1.20
181614--181680	18	3.5	18	72	21	55	67	23	4	4	1.28
193839--193875	7	5.3	7	96	0	65	40	0	43	16	1.48
204412--204551	59	2.4	59	86	3	185	31	5	31	31	1.81
204419--204521	30	3.5	29	75	7	91	32	4	31	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205639--205725	35	2.4	36	84	9	115	48	3	1	47	1.26
205636--205681	24	2.0	24	86	4	67	54	2	0	43	1.12
212951--213090	59	2.4	59	86	3	185	31	5	31	31	1.81
212958--213060	30	3.5	29	75	7	91	32	4	31	32	1.79
214178--214264	35	2.4	36	84	9	115	48	3	1	47	1.26
214175--214220	24	2.0	24	86	4	67	54	2	0	43	1.12
215074--215540	200	2.3	201	88	2	681	20	25	19	34	1.96
215481--215577	37	2.6	37	100	0	194	28	22	16	31	1.96
215280--215732	238	1.9	237	92	1	755	20	24	19	34	1.96
215732--215882	79	1.9	79	91	0	248	23	23	17	35	1.95
216448--216502	27	2.0	27	85	0	74	50	7	25	16	1.70

Tables:   1

The End!