genome.fa.s11374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011374.1 Kokia drynarioides strain JFW-HI SEQ_126355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191179

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--34	2	17.5	2	93	6	61	50	0	0	50	1.00
7479--7524	16	2.8	17	78	12	51	47	6	10	34	1.64
7486--7522	18	2.1	18	90	5	58	48	5	8	37	1.56
13468--13531	18	3.5	19	73	14	62	37	0	4	57	1.19
18752--18806	28	1.9	29	88	3	85	40	9	10	40	1.72
20215--20251	3	12.3	3	94	0	65	62	2	35	0	1.10
25185--25286	30	3.5	31	74	18	92	46	0	2	50	1.16
26946--26984	14	2.7	14	80	4	51	41	0	0	58	0.98
27138--27182	18	2.5	18	92	7	74	57	0	0	42	0.98
27208--27242	18	1.9	18	94	0	61	14	8	0	77	0.99
27407--27447	20	2.0	20	90	9	66	53	4	2	39	1.35
27742--27791	23	2.2	23	85	0	64	78	2	4	16	1.00
28464--28500	2	18.5	2	100	0	74	51	0	0	48	1.00
39506--39557	26	2.0	27	84	3	70	40	5	1	51	1.37
42577--42603	13	2.1	13	100	0	54	29	14	25	29	1.95
43724--43782	29	2.0	30	86	3	84	49	15	6	28	1.70
46319--46360	17	2.6	16	84	3	57	71	0	2	26	0.98
47299--47340	12	3.1	15	77	22	56	40	0	0	59	0.97
47308--47369	13	4.8	13	71	15	56	33	1	0	64	1.03
47618--47660	22	2.0	22	95	4	79	37	4	0	58	1.19
51577--51632	3	18.3	3	85	3	67	0	41	0	58	0.98
54827--54857	15	2.1	14	94	5	53	22	0	3	74	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54814--54863	15	2.9	17	77	17	50	26	0	2	72	0.96
61932--61990	27	2.2	27	78	6	66	50	15	3	30	1.60
66168--66207	20	2.0	20	85	4	55	25	2	17	55	1.55
68668--69059	136	2.9	136	86	0	527	31	18	12	36	1.89
70445--71362	319	2.9	319	83	8	1086	35	17	20	26	1.94
72018--72069	21	2.5	21	84	6	61	36	3	7	51	1.49
73455--73522	32	2.1	32	91	0	109	47	10	8	33	1.69
74811--74903	22	4.5	21	75	14	77	6	3	20	69	1.24
74827--74883	21	2.6	22	83	2	71	5	3	19	71	1.19
74939--75012	12	6.2	12	80	3	87	10	8	16	64	1.47
75048--75072	12	2.1	12	100	0	50	16	0	16	68	1.22
74992--75085	46	2.0	46	82	8	111	13	4	14	67	1.38
77283--77308	2	13.0	2	100	0	52	50	0	0	50	1.00
78351--78383	17	1.9	17	88	11	50	15	6	3	75	1.11
108124--108162	19	2.1	19	100	0	78	53	15	5	25	1.62
113177--113201	12	2.1	12	100	0	50	84	0	0	16	0.63
116204--116249	22	2.1	22	88	8	67	36	10	4	47	1.58
120280--120358	28	2.9	27	78	12	83	46	2	1	49	1.23
120290--120368	21	3.6	22	74	6	72	46	2	0	50	1.14
120321--120365	23	2.0	22	86	4	63	51	0	0	48	1.00
122624--122666	23	2.0	21	90	9	68	67	0	0	32	0.91
125290--125355	22	3.0	22	76	6	62	51	3	1	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130189--130229	22	1.9	22	85	5	57	39	4	2	53	1.35
130211--130253	20	2.2	20	82	0	50	39	4	0	55	1.20
132207--132611	29	13.9	28	75	11	241	35	25	1	37	1.67
132279--132708	59	7.3	58	81	8	412	34	24	1	38	1.66
132207--132708	29	17.1	29	70	14	230	35	24	1	38	1.66
133770--133835	31	2.1	31	83	5	80	51	13	10	24	1.72
133849--133911	1	63.0	1	74	0	54	87	0	12	0	0.55
133850--133915	7	9.4	7	100	0	132	86	0	13	0	0.57
137261--137319	21	2.8	21	87	10	77	61	10	5	23	1.48
137279--137320	21	2.0	21	100	0	84	57	14	4	23	1.56
137512--137898	59	6.5	57	77	10	316	32	3	29	34	1.76
137546--137887	119	2.9	116	82	8	390	31	4	28	35	1.76
137541--137887	30	11.7	29	76	7	297	31	4	29	34	1.76
138999--139031	12	2.6	13	95	4	59	45	3	0	51	1.16
139670--139717	22	2.1	23	88	3	71	52	0	4	43	1.20
139670--139714	11	3.9	12	77	16	51	48	0	4	46	1.22
141661--141719	31	1.9	31	83	13	77	38	1	0	59	1.08
144179--144223	24	1.9	23	86	4	63	42	0	2	55	1.12
146221--146256	18	2.1	17	89	5	54	41	0	8	50	1.33
146361--146394	18	2.0	17	88	11	52	47	0	0	52	1.00
155849--155884	17	2.1	17	89	0	54	33	0	8	58	1.28
155997--156048	26	2.0	26	84	0	68	23	0	15	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170668--170709	21	2.0	22	85	4	59	47	2	0	50	1.14
170709--170748	21	1.9	21	84	0	53	35	20	7	37	1.81
170887--171023	57	2.5	55	86	10	174	57	5	10	25	1.55
172225--172271	19	2.5	18	80	16	51	14	4	2	78	0.99
178501--178542	21	2.0	21	100	0	84	57	4	14	23	1.56
180519--180576	17	3.7	16	70	21	50	37	3	0	58	1.15
186856--186919	17	3.7	17	76	12	76	35	1	9	53	1.43
187696--187732	3	12.3	3	88	11	58	67	0	0	32	0.91
187688--187732	22	2.1	22	84	15	60	66	0	0	33	0.92
188864--188941	29	2.7	29	86	9	97	34	23	0	42	1.54
188894--189179	58	5.0	55	76	9	193	31	26	4	36	1.78
188927--189179	29	8.8	29	68	15	112	32	26	5	35	1.80
188925--189134	28	7.3	30	67	20	101	32	25	5	36	1.80
189036--189180	58	2.5	59	83	2	211	31	27	6	34	1.82
188879--189172	29	10.1	31	70	12	99	32	25	4	38	1.75
189036--189200	58	2.8	57	80	5	195	32	26	6	35	1.81

Tables:   1

The End!