Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011376.1 Kokia drynarioides strain JFW-HI SEQ_126357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3884
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32


Found at i:1050 original size:24 final size:25

Alignment explanation


    Indices: 1008--1055  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 25

        998 AGATTGTTAA

                                     
       1008 AACAATTTTTAAAAGAAA-CTCAAG
          1 AACAATTTTTAAAAGAAACCTCAAG

                       *             
       1032 AACAATTTTT-GAAGAAAACCTCAA
          1 AACAATTTTTAAAAG-AAACCTCAA

       1056 AGAGAGTTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  23    3  0.14
  24   13  0.62
  25    5  0.24

ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25


Consensus pattern (25 bp):   
AACAATTTTTAAAAGAAACCTCAAG
Done.