Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011386.1 Kokia drynarioides strain JFW-HI SEQ_126368, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8691
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32

Warning! 57 characters in sequence are not A, C, G, or T


Found at i:4821 original size:19 final size:20

Alignment explanation


    Indices: 4797--4835  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       4787 AAGTACAACT

                                
       4797 AAATTTAA-AATTCAAAAAA
          1 AAATTTAACAATTCAAAAAA

                                
       4816 AAATTTAACCAATTCAAAAA
          1 AAATTTAA-CAATTCAAAAA

       4836 GTACAGAGAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    8  0.44
  21   10  0.56

ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26


Consensus pattern (20 bp):   
AAATTTAACAATTCAAAAAA

Done.