genome.fa.s11389.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011389.1 Kokia drynarioides strain JFW-HI SEQ_126371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134514

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6912--7365	230	2.0	232	86	5	643	40	4	14	40	1.67
9587--9627	21	2.0	21	85	4	57	34	24	4	36	1.77
9640--9681	21	2.0	22	90	4	68	40	0	0	59	0.97
15843--16177	59	5.6	58	76	10	216	37	4	26	31	1.76
15900--16333	29	14.8	29	69	19	183	37	3	26	32	1.72
15816--15982	60	2.8	60	78	7	189	37	5	24	32	1.80
16041--16132	33	2.9	32	73	20	86	42	4	25	28	1.74
16139--16246	57	1.9	57	83	7	139	38	0	26	34	1.57
15957--16215	119	2.2	119	82	6	303	37	2	27	31	1.71
22174--22351	59	3.0	61	79	15	189	37	6	25	30	1.81
22261--22598	59	5.6	58	73	12	213	36	3	26	33	1.75
22561--22785	30	7.7	29	74	10	172	39	1	24	35	1.64
22319--22663	123	2.9	121	80	6	337	37	2	25	34	1.70
22436--22751	29	10.7	29	69	18	161	37	0	26	35	1.63
22562--22782	59	3.8	58	82	5	225	39	1	23	35	1.63
23776--23878	28	3.5	28	70	14	73	37	1	1	58	1.21
23780--23888	3	34.7	3	69	9	56	36	3	1	57	1.27
24596--24667	17	4.4	17	79	13	87	54	4	1	40	1.28
24596--24667	32	2.2	33	90	9	112	54	4	1	40	1.28
32808--33003	98	2.0	98	88	0	293	23	16	19	39	1.92
39691--39754	33	1.9	33	87	0	92	54	10	0	34	1.35
40774--40827	27	2.0	27	85	3	72	1	33	7	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41504--41564	29	2.1	30	90	9	99	47	22	4	24	1.71
44245--44282	20	1.9	20	88	0	58	23	26	2	47	1.65
44540--44615	27	2.8	27	100	0	152	23	23	21	31	1.98
49028--49094	20	3.3	20	93	6	109	11	22	14	50	1.76
53859--53904	25	1.9	23	82	8	56	58	17	0	23	1.38
53907--54108	37	5.5	37	76	12	179	55	19	2	22	1.55
53942--54097	67	2.3	67	78	12	167	56	19	2	21	1.54
54026--54136	25	4.3	25	79	10	91	57	19	1	20	1.50
53946--54133	37	5.4	34	72	17	122	56	19	2	21	1.54
54024--54137	21	5.6	18	70	23	59	57	20	1	20	1.49
57968--58011	22	2.0	22	100	0	88	36	13	9	40	1.76
58655--58744	25	3.6	25	73	10	76	60	2	2	35	1.22
59440--59483	21	2.1	21	84	12	56	59	6	11	22	1.55
59944--60281	121	2.8	118	76	10	306	31	6	11	50	1.64
64767--64809	3	14.3	3	100	0	86	32	0	0	67	0.91
65432--65478	14	3.4	14	77	16	62	29	6	27	36	1.82
67613--67677	27	2.4	27	76	23	66	43	1	1	53	1.19
73997--74037	15	2.9	15	75	24	52	36	17	7	39	1.77
77207--77265	29	2.0	30	80	9	68	22	16	6	54	1.66
77325--77373	21	2.3	21	86	6	64	30	0	0	69	0.89
77549--77592	22	2.0	22	100	0	88	31	13	9	45	1.75
80177--80208	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80250--80308	9	6.4	9	78	18	59	35	0	1	62	1.05
80299--80365	18	3.3	20	79	14	75	29	0	5	64	1.17
81561--81636	20	3.8	20	74	13	75	40	0	5	53	1.23
96267--96398	67	2.0	67	96	0	246	41	24	16	17	1.89
104483--104728	53	4.6	53	83	0	303	36	19	15	28	1.92
106370--106439	17	4.1	17	83	5	88	47	2	1	48	1.25
106377--106439	6	11.0	6	77	16	62	47	3	1	47	1.27
108275--108585	30	10.5	30	81	8	361	34	29	4	30	1.78
108275--108600	59	5.5	59	88	2	449	33	30	4	30	1.79
108275--108600	117	2.8	116	84	4	422	33	30	4	30	1.79
120525--121136	205	3.0	205	92	2	970	33	21	24	20	1.97
129260--129329	17	4.1	17	87	5	97	48	2	0	48	1.16
129260--129316	11	5.1	11	79	10	62	47	1	0	50	1.11
129267--129329	6	11.0	6	79	16	71	49	3	0	47	1.17
130379--130757	59	6.4	59	85	5	475	35	28	3	32	1.75
130383--130748	117	3.1	117	88	3	524	36	28	3	31	1.75
130379--130762	29	13.1	30	77	11	354	35	29	3	32	1.75

Tables:   1

The End!