Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011394.1 Kokia drynarioides strain JFW-HI SEQ_126376, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2450
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:1832 original size:45 final size:45

Alignment explanation


    Indices: 1711--1836  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

       1701 AGTATCGTGA

                          *  *           **              
       1711 TGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTACGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG

                    *   *             *              *   
       1756 TGGCTCGTTAAATTGAGGCTGATATCTTTGGCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG

                                                
       1801 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

       1837 TGAGCTCTGC


Statistics
Matches: 70,  Mismatches: 11, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  45   70  1.00

ACGTcount: A:0.19, C:0.21, G:0.26, T:0.33


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG
Done.