genome.fa.s11396.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011396.1 Kokia drynarioides strain JFW-HI SEQ_126378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196120

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9565--9698	72	1.9	69	87	6	198	38	23	11	26	1.90
9586--9698	36	3.1	36	97	0	208	37	24	10	27	1.88
9780--10451	23	29.2	23	85	1	826	45	14	5	34	1.68
13180--13219	21	1.9	21	85	10	55	25	52	15	7	1.68
16112--16162	24	2.1	24	82	7	59	23	49	13	13	1.78
22462--22772	30	10.3	30	73	6	234	37	3	25	33	1.74
22405--22764	121	3.0	119	80	8	361	37	3	24	34	1.74
23270--23341	26	2.5	28	78	14	69	20	11	2	65	1.37
24753--24912	85	1.9	85	88	2	241	23	20	18	37	1.94
24674--25616	207	4.5	207	87	2	1223	24	21	17	37	1.94
24951--25118	85	2.0	85	86	2	239	27	22	13	36	1.91
26591--26660	36	1.9	36	91	0	113	12	20	17	50	1.78
33730--33776	24	2.0	24	86	0	67	17	17	8	57	1.63
37602--37662	29	2.1	29	87	3	88	31	3	27	37	1.73
37660--37967	30	10.3	29	77	6	177	36	2	24	37	1.69
37616--37943	60	5.5	59	77	5	291	35	2	25	36	1.71
37629--37968	121	2.8	120	82	4	373	36	2	24	36	1.70
38629--38658	6	5.0	6	100	0	60	0	0	16	83	0.65
43514--43561	21	2.3	21	88	0	69	60	8	18	12	1.57
43846--43886	19	2.0	20	86	13	57	46	0	0	53	1.00
45379--45440	24	2.7	23	82	5	72	56	1	3	38	1.25
45844--45897	23	2.4	24	75	12	60	57	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46235--46285	15	3.5	15	69	15	52	23	9	13	52	1.70
46481--46523	18	2.4	18	80	7	52	44	4	0	51	1.22
50344--50432	27	3.3	27	82	3	90	32	21	19	26	1.97
50355--50433	27	2.9	27	83	3	97	29	20	18	31	1.97
51379--51403	4	6.2	4	100	0	50	52	24	0	24	1.48
53015--53074	20	3.0	20	82	0	75	31	6	13	48	1.68
53143--53186	22	1.9	24	86	9	65	45	6	0	47	1.29
53651--53685	9	4.0	9	92	7	63	0	65	0	34	0.93
53651--53687	17	2.2	17	100	0	74	0	64	0	35	0.94
55921--55974	21	2.7	20	82	5	63	12	1	38	46	1.53
58697--58743	3	15.7	3	100	0	94	68	0	31	0	0.90
60700--60993	52	5.7	52	92	0	471	34	22	13	29	1.92
64368--64419	20	2.7	20	81	3	70	51	0	0	48	1.00
82934--82963	14	2.1	15	93	6	53	13	16	0	70	1.18
91388--91913	43	12.3	43	82	3	537	28	26	18	26	1.98
92216--92258	21	2.0	21	95	0	77	4	46	13	34	1.65
94348--94470	65	1.9	65	91	0	201	34	21	12	31	1.91
98081--98213	70	1.9	70	90	3	214	39	2	12	45	1.55
98151--98564	122	3.4	121	89	3	607	40	2	7	50	1.43
98437--98682	109	2.3	109	87	4	354	41	2	5	51	1.36
98151--98672	244	2.2	242	82	8	587	40	1	7	50	1.42
100495--100540	24	1.9	25	86	8	69	54	6	4	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100606--100639	13	2.6	13	85	0	50	58	11	0	29	1.33
101168--101198	16	1.9	16	93	0	53	41	25	16	16	1.88
101518--101568	25	2.0	25	96	0	93	54	9	11	23	1.66
105187--105544	41	8.7	41	79	0	356	25	20	23	29	1.99
107051--107092	19	2.3	18	84	15	52	57	4	0	38	1.20
107962--108013	22	2.4	22	100	0	104	42	0	0	57	0.98
114328--114362	15	2.2	16	90	5	54	2	14	2	80	0.95
114660--114727	32	2.1	33	86	10	95	39	8	5	45	1.60
118925--118963	18	2.2	18	86	9	53	25	30	0	43	1.55
123237--123438	30	6.9	30	77	13	133	35	3	27	33	1.74
123191--123445	29	8.8	29	74	16	181	34	3	27	34	1.73
123164--123435	87	3.1	86	79	9	259	36	2	27	33	1.72
124443--124467	12	2.1	12	100	0	50	16	0	8	76	1.02
125093--125140	23	2.1	23	100	0	96	33	12	39	14	1.84
125260--125306	24	2.0	23	87	4	67	48	2	2	46	1.25
125273--125357	17	4.9	17	82	8	100	50	3	1	44	1.26
125270--125352	6	14.3	6	70	16	59	51	2	1	44	1.22
127206--127342	59	2.3	60	82	6	154	46	11	17	24	1.81
127266--127329	28	2.4	28	79	10	71	50	9	17	23	1.75
127605--127796	69	2.8	68	82	4	226	35	15	16	32	1.90
128293--128354	24	2.6	24	78	14	65	35	4	4	54	1.43
129443--129496	27	2.0	27	100	0	108	33	3	22	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131134--131222	35	2.6	36	83	7	112	20	6	33	39	1.79
132010--132063	25	2.2	25	93	6	92	22	29	11	37	1.89
132547--132683	68	2.0	68	100	0	274	35	20	16	27	1.94
134736--134889	54	3.0	52	80	7	127	36	22	14	26	1.93
134777--134889	27	4.3	27	87	3	158	36	20	15	27	1.93
144275--144434	27	6.2	25	80	2	113	37	25	14	22	1.92
144345--144456	27	4.1	27	82	0	125	40	20	11	27	1.87
165248--165302	22	2.5	22	79	5	58	16	25	20	38	1.92
171384--171424	2	20.5	2	92	0	64	51	2	2	43	1.28
172708--172757	17	3.0	17	82	8	50	56	0	20	24	1.43
172721--172757	17	2.2	18	85	9	51	56	0	21	21	1.42
172708--172757	22	2.3	22	79	6	57	56	0	20	24	1.43
186600--186653	26	2.1	26	100	0	108	29	22	11	37	1.89
189738--189790	24	2.2	25	82	3	63	28	3	1	66	1.20
192721--192755	13	2.6	14	86	9	54	20	0	0	80	0.72
195506--195837	168	2.0	168	93	0	565	30	15	22	31	1.95
195898--195927	11	2.6	12	94	5	53	60	0	0	40	0.97
195892--195947	29	1.9	29	89	7	87	62	0	0	37	0.95
195867--195947	38	2.0	39	81	13	94	60	2	1	35	1.18
196003--196080	40	2.0	40	87	5	113	55	1	1	42	1.16
195999--196062	29	2.2	29	80	5	76	56	0	1	42	1.09
196048--196105	23	2.5	23	91	0	98	48	3	1	46	1.29

Tables:   1

The End!