genome.fa.s11398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011398.1 Kokia drynarioides strain JFW-HI SEQ_126380, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161931

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709--1764	28	2.0	28	92	0	94	30	17	28	23	1.97
6867--7083	52	4.0	52	76	9	182	33	23	14	29	1.94
6889--7060	60	3.0	60	80	10	207	32	23	15	29	1.95
6843--7060	112	1.9	112	85	1	294	33	23	15	27	1.95
20823--20886	29	2.2	29	100	0	128	15	26	29	28	1.96
23721--23766	15	3.0	15	84	12	58	76	0	21	2	0.90
25484--25584	52	1.9	52	89	0	157	33	22	13	29	1.93
27663--27731	28	2.5	28	92	0	111	26	15	34	23	1.95
32615--32668	28	1.9	28	88	0	81	27	18	27	25	1.98
37572--37626	28	2.0	28	92	7	94	29	18	27	25	1.98
39615--39652	2	19.0	2	88	0	58	50	5	0	44	1.24
42563--42660	36	2.7	36	90	0	151	32	17	28	21	1.96
46520--46573	23	2.3	23	90	0	81	9	24	22	44	1.81
46532--46632	23	4.5	22	75	9	78	13	21	25	38	1.91
64854--64901	17	2.8	17	87	9	71	2	14	0	83	0.74
65482--65518	19	1.9	19	94	0	65	62	10	8	18	1.52
76772--76798	6	4.5	6	100	0	54	14	0	51	33	1.43
77345--77384	18	2.3	18	86	4	55	17	15	10	57	1.64
77983--78015	12	2.8	12	86	13	50	81	0	15	3	0.80
81443--81476	14	2.3	15	90	5	52	11	0	5	82	0.83
86440--86475	19	1.9	19	88	5	56	38	5	19	36	1.75
93112--93166	25	2.2	25	96	0	101	29	18	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94478--94511	18	1.9	17	88	5	50	23	11	8	55	1.63
104831--104873	20	2.2	20	91	4	70	34	0	16	48	1.46
107095--107128	13	2.6	13	90	9	52	61	0	23	14	1.33
107470--108331	213	4.0	215	78	9	833	41	12	16	29	1.85
109022--109076	10	5.4	10	82	2	56	43	21	1	32	1.63
109017--109076	30	2.0	30	83	6	77	45	21	1	31	1.62
109479--109556	36	2.2	35	86	6	111	35	25	8	29	1.87
114805--114859	26	2.1	27	86	3	76	60	3	5	30	1.37
114907--114965	30	2.0	30	86	0	82	40	1	16	40	1.59
115006--115162	30	5.3	30	74	6	131	31	8	23	36	1.85
114962--115179	30	7.4	29	69	13	124	31	8	22	37	1.84
127953--127992	21	2.0	21	95	5	73	25	12	10	52	1.70
129374--129404	2	15.5	2	93	0	53	48	0	51	0	1.00
132647--132727	41	2.0	41	87	4	119	39	1	24	34	1.64
132662--132739	41	1.9	41	84	5	104	42	2	23	32	1.67
135813--135840	2	14.0	2	100	0	56	50	0	0	50	1.00
137011--137077	30	2.2	30	89	0	98	32	23	11	31	1.91
138269--138380	41	2.7	41	84	0	134	40	0	26	32	1.62
139556--139672	49	2.6	46	86	10	163	43	2	24	29	1.67
139572--139695	49	2.5	49	84	5	178	41	3	28	26	1.71
142131--143745	801	2.0	802	95	1	2937	31	14	18	35	1.91
145320--145374	27	2.0	27	85	0	74	27	14	14	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149679--150106	23	18.6	23	86	1	500	32	5	13	48	1.65
149679--150106	69	6.2	69	86	2	563	32	5	13	48	1.65
151251--151296	25	1.9	23	86	8	65	32	6	4	56	1.45
152345--152415	13	5.4	13	70	9	54	25	2	2	69	1.16
155511--155552	16	2.6	16	82	10	50	83	0	7	9	0.81
155489--155545	27	2.1	27	86	3	78	80	3	8	7	1.00
157647--157695	23	2.1	23	96	0	89	40	30	4	24	1.74

Tables:   1

The End!