Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000114.1 Kokia drynarioides strain JFW-HI SEQ_110753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3083
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37


Found at i:2266 original size:27 final size:27

Alignment explanation


    Indices: 2215--2362  Score: 111
    Period size: 27  Copynumber: 5.4  Consensus size: 27

       2205 ATTCAATAAG

                            *  **     *
       2215 TCTGGCTCGAAAGAGCGATGCTCTATT
          1 TCTGGCTCGAAAGAGCAATATTCTATA

                           *           
       2242 TCTGGCTCGAAAGAGAAATATTCTATA
          1 TCTGGCTCGAAAGAGCAATATTCTATA

               *   **                  *
       2269 TCTAGCTTAAAAGAGCAATATTC-AGTT
          1 TCTGGCTCGAAAGAGCAATATTCTA-TA

             *      *             *     
       2296 TTTGGCTCAAAAGAGCAATATTTTGA-A
          1 TCTGGCTCGAAAGAGCAATATTCT-ATA

                      *       *      *  
       2323 CTCTGGCTCGGAAGAGCATTATTCTGTA
          1 -TCTGGCTCGAAAGAGCAATATTCTATA

                *       
       2351 TCTGACTCGAAA
          1 TCTGGCTCGAAA

       2363 TATCATTATT


Statistics
Matches: 93,  Mismatches: 23, Indels: 10
        0.74            0.18        0.08

Matches are distributed among these distances:
  26    1  0.01
  27   71  0.76
  28   20  0.22
  29    1  0.01

ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Consensus pattern (27 bp):   
TCTGGCTCGAAAGAGCAATATTCTATA
Done.